Wall clock time and date at job start Tue Mar 31 2020 16:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47166 * 2 1 4 4 C 1.38232 * 120.00111 * 89.99631 * 3 2 1 5 5 C 1.38235 * 119.99949 * 180.02562 * 4 3 2 6 6 C 1.38236 * 119.99853 * 0.02562 * 5 4 3 7 7 C 1.50709 * 119.99823 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.46840 * 89.99998 * 7 6 5 9 9 C 1.50695 * 109.47040 * 179.97438 * 8 7 6 10 10 O 1.21285 * 119.99833 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00393 * 180.02562 * 9 8 7 12 12 C 1.47431 * 125.64300 * 359.97064 * 11 9 8 13 13 C 1.54914 * 104.82819 * 204.17319 * 12 11 9 14 14 C 1.55157 * 101.58180 * 322.98999 * 13 12 11 15 15 H 1.09002 * 110.72219 * 277.13982 * 14 13 12 16 16 N 1.46505 * 110.71610 * 154.04431 * 14 13 12 17 17 C 1.36930 * 119.99608 * 88.84878 * 16 14 13 18 18 H 1.08002 * 120.00527 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99561 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00385 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47152 * 60.00033 * 21 19 17 23 23 H 1.48500 * 109.47162 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47099 * 299.99706 * 21 19 17 25 25 C 1.47479 * 125.59759 * 180.02562 * 11 9 8 26 26 H 1.09001 * 109.96484 * 59.58048 * 25 11 9 27 27 C 1.52997 * 110.03102 * 298.27234 * 25 11 9 28 28 C 1.38231 * 119.99987 * 0.25327 * 6 5 4 29 29 C 1.38232 * 119.99594 * 270.01551 * 3 2 1 30 30 H 1.08997 * 109.46823 * 60.00112 * 1 2 3 31 31 H 1.09001 * 109.47111 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47172 * 300.00311 * 1 2 3 33 33 H 1.08995 * 109.47857 * 239.99288 * 2 1 3 34 34 H 1.09013 * 109.47066 * 119.99475 * 2 1 3 35 35 H 1.07999 * 120.00410 * 0.02562 * 4 3 2 36 36 H 1.07998 * 119.99986 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.47127 * 330.00285 * 7 6 5 38 38 H 1.09003 * 109.46702 * 209.99988 * 7 6 5 39 39 H 1.08998 * 109.47026 * 60.00225 * 8 7 6 40 40 H 1.09002 * 109.47133 * 299.99952 * 8 7 6 41 41 H 1.08999 * 110.36561 * 85.33459 * 12 11 9 42 42 H 1.09000 * 110.45999 * 323.05707 * 12 11 9 43 43 H 1.09004 * 111.00264 * 204.91514 * 13 12 11 44 44 H 1.09001 * 111.00188 * 81.06687 * 13 12 11 45 45 H 0.96995 * 119.99603 * 268.83481 * 16 14 13 46 46 H 0.97001 * 119.99920 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.47185 * 302.38640 * 27 25 11 48 48 H 1.08996 * 109.47557 * 62.38682 * 27 25 11 49 49 H 1.09002 * 109.47281 * 182.38957 * 27 25 11 50 50 H 1.08002 * 120.00142 * 179.73373 * 28 6 5 51 51 H 1.07998 * 120.00370 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7229 3.3760 1.1971 6 6 2.9524 4.0279 -0.0001 7 6 3.4537 5.4492 -0.0002 8 6 4.9837 5.4503 -0.0007 9 6 5.4849 6.8714 -0.0014 10 8 4.6961 7.7927 -0.0019 11 7 6.8098 7.1187 -0.0025 12 6 7.8742 6.0986 -0.0025 13 6 9.1062 6.8111 0.6094 14 6 8.9617 8.2409 0.0243 15 1 9.3754 8.2890 -0.9830 16 7 9.6081 9.2253 0.8957 17 6 10.9325 9.5271 0.7231 18 1 11.5007 9.0393 -0.0551 19 6 11.5449 10.4603 1.5485 20 7 10.8524 11.0552 2.4966 21 14 13.3519 10.8716 1.3136 22 1 13.5634 11.4092 -0.0545 23 1 13.7618 11.8898 2.3138 24 1 14.1667 9.6434 1.4943 25 6 7.4336 8.4551 -0.0027 26 1 7.1218 9.0115 0.8812 27 6 7.0372 9.2183 -1.2681 28 6 2.7166 3.3781 -1.1972 29 6 2.2624 2.0725 -1.1972 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 2.0830 1.5634 2.1325 36 1 2.9025 3.8853 2.1323 37 1 3.0903 5.9626 0.8900 38 1 3.0896 5.9628 -0.8900 39 1 5.3470 4.9368 -0.8909 40 1 5.3477 4.9366 0.8891 41 1 8.0899 5.7755 -1.0209 42 1 7.5850 5.2461 0.6121 43 1 10.0331 6.3443 0.2759 44 1 9.0479 6.8266 1.6977 45 1 9.0978 9.6632 1.5947 46 1 11.2803 11.7075 3.0731 47 1 7.3355 8.6456 -2.1463 48 1 5.9574 9.3659 -1.2802 49 1 7.5365 10.1872 -1.2795 50 1 2.8917 3.8889 -2.1326 51 1 2.0818 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987511104.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:50 Heat of formation + Delta-G solvation = -36.111041 kcal Electronic energy + Delta-G solvation = -27400.653043 eV Core-core repulsion = 23684.348474 eV Total energy + Delta-G solvation = -3716.304569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.28287 -40.37130 -38.85180 -36.02697 -35.89206 -33.72123 -33.09523 -32.21179 -31.76968 -30.91448 -29.47855 -26.84940 -26.09073 -24.78759 -23.90737 -23.58454 -22.97958 -21.59832 -21.20276 -19.95944 -19.11829 -18.15018 -17.41246 -16.87805 -16.75135 -16.53393 -16.19817 -15.91942 -15.56420 -15.35949 -14.89031 -14.66001 -14.58543 -14.49144 -14.25803 -14.20695 -13.93620 -13.85223 -13.52135 -13.27687 -13.18477 -13.11030 -12.88171 -12.72728 -12.61745 -12.49791 -12.34308 -12.28730 -12.20215 -12.09607 -11.86565 -11.71579 -11.62998 -11.59225 -11.53375 -10.92616 -10.78233 -9.77507 -9.64793 -9.36900 -9.02552 -7.93665 -5.23809 0.43860 0.55022 1.49454 1.52288 1.58202 1.65874 1.97269 2.57903 2.86898 3.36574 3.47842 3.75573 3.79089 3.90337 3.92676 4.02090 4.08021 4.14266 4.18838 4.20547 4.30998 4.36838 4.39422 4.42819 4.52877 4.54374 4.60678 4.65017 4.67100 4.67872 4.73946 4.79326 4.92222 4.97400 5.05321 5.09378 5.11460 5.11844 5.21725 5.24067 5.25691 5.28056 5.36005 5.40825 5.47004 5.54771 5.57616 5.77611 5.78581 6.17146 6.26253 6.61514 7.18478 7.32737 8.05040 8.28908 9.29559 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028877 B = 0.001863 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.401089 B =15024.746703 C =15356.843810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.124 4.124 5 C -0.123 4.123 6 C -0.093 4.093 7 C -0.058 4.058 8 C -0.116 4.116 9 C 0.520 3.480 10 O -0.587 6.587 11 N -0.612 5.612 12 C 0.106 3.894 13 C -0.149 4.149 14 C 0.169 3.831 15 H 0.070 0.930 16 N -0.729 5.729 17 C -0.239 4.239 18 H 0.083 0.917 19 C -0.075 4.075 20 N -0.971 5.971 21 Si 0.974 3.026 22 H -0.278 1.278 23 H -0.300 1.300 24 H -0.275 1.275 25 C 0.131 3.869 26 H 0.042 0.958 27 C -0.143 4.143 28 C -0.120 4.120 29 C -0.123 4.123 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.370 0.630 46 H 0.250 0.750 47 H 0.069 0.931 48 H 0.051 0.949 49 H 0.056 0.944 50 H 0.131 0.869 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.713 -25.085 -8.029 31.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.142 4.142 5 C -0.141 4.141 6 C -0.093 4.093 7 C -0.096 4.096 8 C -0.155 4.155 9 C 0.310 3.690 10 O -0.467 6.467 11 N -0.346 5.346 12 C -0.016 4.016 13 C -0.189 4.189 14 C 0.060 3.940 15 H 0.088 0.912 16 N -0.369 5.369 17 C -0.371 4.371 18 H 0.101 0.899 19 C -0.268 4.268 20 N -0.622 5.622 21 Si 0.803 3.197 22 H -0.204 1.204 23 H -0.227 1.227 24 H -0.201 1.201 25 C 0.027 3.973 26 H 0.060 0.940 27 C -0.201 4.201 28 C -0.138 4.138 29 C -0.141 4.141 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.144 0.856 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.073 0.927 45 H 0.202 0.798 46 H 0.059 0.941 47 H 0.088 0.912 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.149 0.851 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.022 -24.613 -8.108 31.565 hybrid contribution 0.836 1.245 0.656 1.637 sum -17.186 -23.368 -7.452 29.949 Atomic orbital electron populations 1.21737 0.94461 1.02303 1.01776 1.20580 0.96333 0.91643 1.03575 1.20181 0.98831 0.97192 0.93113 1.21230 0.99879 0.94748 0.98378 1.21226 0.99758 0.95272 0.97860 1.19849 1.00217 0.95473 0.93792 1.20214 0.93381 0.92629 1.03349 1.21613 0.96403 0.91216 1.06266 1.21087 0.80114 0.92738 0.75016 1.90668 1.55385 1.48342 1.52334 1.48808 1.05550 1.07915 1.72279 1.22516 0.85627 0.90912 1.02532 1.23384 0.98147 0.97124 1.00280 1.21449 0.88841 0.89311 0.94437 0.91178 1.42513 1.08652 1.47699 1.37987 1.19600 0.87226 1.17587 1.12647 0.89870 1.25584 1.02378 1.00140 0.98656 1.69832 1.37254 1.31950 1.23126 0.85201 0.80144 0.77406 0.76920 1.20379 1.22687 1.20090 1.21692 0.93577 0.84232 0.97815 0.93982 1.21909 1.01159 1.00094 0.96913 1.21235 0.99571 0.95168 0.97814 1.21249 0.99787 0.94733 0.98322 0.92964 0.91245 0.93122 0.90233 0.90427 0.84931 0.85634 0.91693 0.91137 0.86626 0.87325 0.88821 0.88192 0.89291 0.92707 0.79795 0.94144 0.91210 0.92954 0.92534 0.85136 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 71.98 0.71 -0.61 16 2 C -0.08 -0.81 6.06 29.85 0.18 -0.63 16 3 C -0.09 -1.30 5.13 -19.87 -0.10 -1.41 16 4 C -0.12 -1.87 9.70 22.27 0.22 -1.65 16 5 C -0.12 -2.09 9.70 22.27 0.22 -1.87 16 6 C -0.09 -1.66 5.13 -19.86 -0.10 -1.76 16 7 C -0.06 -1.17 4.64 29.85 0.14 -1.03 16 8 C -0.12 -2.21 4.69 29.85 0.14 -2.07 16 9 C 0.52 14.99 7.65 87.66 0.67 15.66 16 10 O -0.59 -21.82 15.05 -3.05 -0.05 -21.87 16 11 N -0.61 -17.72 3.08 -786.95 -2.42 -20.15 16 12 C 0.11 2.36 6.69 86.86 0.58 2.94 16 13 C -0.15 -4.52 6.77 31.99 0.22 -4.30 16 14 C 0.17 6.36 3.12 46.18 0.14 6.50 16 15 H 0.07 2.57 7.81 -2.39 -0.02 2.55 16 16 N -0.73 -35.95 5.24 -317.32 -1.66 -37.61 16 17 C -0.24 -12.79 9.97 84.03 0.84 -11.95 16 18 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 19 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 20 N -0.97 -59.34 13.06 21.65 0.28 -59.05 16 21 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 C 0.13 4.71 3.23 45.25 0.15 4.86 16 26 H 0.04 1.79 7.70 -2.39 -0.02 1.78 16 27 C -0.14 -4.84 9.11 71.98 0.66 -4.18 16 28 C -0.12 -1.91 9.70 22.27 0.22 -1.70 16 29 C -0.12 -1.75 9.70 22.27 0.22 -1.54 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 34 H 0.08 0.65 8.09 -2.38 -0.02 0.63 16 35 H 0.13 1.55 8.06 -2.91 -0.02 1.52 16 36 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.06 1.49 8.04 -2.39 -0.02 1.47 16 38 H 0.07 1.53 8.04 -2.39 -0.02 1.51 16 39 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.11 1.76 7.85 -2.39 -0.02 1.75 16 41 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.10 1.68 7.48 -2.39 -0.02 1.66 16 43 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.37 20.28 7.54 -92.71 -0.70 19.58 16 46 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 47 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.05 1.86 6.93 -2.39 -0.02 1.84 16 49 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 51 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -69.21 412.91 3.92 -65.28 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.19 Total: 34.65 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 5.55 Total: -8.52 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -3.80 Total: -116.81 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.05 Total: -21.87 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.21 3.92 -65.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987511104.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.173 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds