Wall clock time and date at job start Tue Mar 31 2020 16:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46934 * 2 1 4 4 C 1.38237 * 120.00053 * 90.00220 * 3 2 1 5 5 C 1.38235 * 119.99566 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00176 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99717 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47230 * 90.00012 * 7 6 5 9 9 C 1.50701 * 109.47230 * 180.02562 * 8 7 6 10 10 O 1.21273 * 119.99920 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99661 * 180.27584 * 9 8 7 12 12 C 1.47425 * 125.65027 * 359.74822 * 11 9 8 13 13 C 1.54915 * 104.82955 * 204.09350 * 12 11 9 14 14 C 1.55153 * 101.58167 * 322.99081 * 13 12 11 15 15 H 1.08998 * 110.72114 * 154.04749 * 14 13 12 16 16 N 1.46507 * 110.72032 * 277.14095 * 14 13 12 17 17 C 1.36934 * 119.99830 * 209.44651 * 16 14 13 18 18 H 1.07998 * 120.00195 * 0.02562 * 17 16 14 19 19 C 1.38815 * 119.99498 * 179.97438 * 17 16 14 20 20 N 1.31611 * 120.00413 * 0.02562 * 19 17 16 21 21 Si 1.86811 * 119.99662 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47015 * 90.00280 * 21 19 17 23 23 H 1.48503 * 109.46859 * 210.00240 * 21 19 17 24 24 H 1.48497 * 109.47156 * 330.00124 * 21 19 17 25 25 C 1.47025 * 125.64593 * 179.44179 * 11 9 8 26 26 H 1.08999 * 109.88336 * 59.55558 * 25 11 9 27 27 C 1.53004 * 109.88128 * 298.39155 * 25 11 9 28 28 C 1.38230 * 120.00395 * 0.25304 * 6 5 4 29 29 C 1.38232 * 119.99833 * 270.01525 * 3 2 1 30 30 H 1.09005 * 109.47016 * 60.00000 * 1 2 3 31 31 H 1.08999 * 109.47257 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47222 * 300.00634 * 1 2 3 33 33 H 1.08998 * 109.47361 * 240.00316 * 2 1 3 34 34 H 1.09000 * 109.47281 * 119.99310 * 2 1 3 35 35 H 1.07997 * 119.99763 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99395 * 179.97438 * 5 4 3 37 37 H 1.09004 * 109.47333 * 329.99883 * 7 6 5 38 38 H 1.09005 * 109.47145 * 209.99962 * 7 6 5 39 39 H 1.08997 * 109.47222 * 59.99395 * 8 7 6 40 40 H 1.09005 * 109.47016 * 300.00030 * 8 7 6 41 41 H 1.08995 * 110.36548 * 322.92739 * 12 11 9 42 42 H 1.08991 * 110.36509 * 85.14334 * 12 11 9 43 43 H 1.09002 * 111.00244 * 81.06664 * 13 12 11 44 44 H 1.08999 * 111.00011 * 204.87518 * 13 12 11 45 45 H 0.96998 * 119.99614 * 29.44311 * 16 14 13 46 46 H 0.97006 * 120.00281 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.46810 * 65.52691 * 27 25 11 48 48 H 1.08996 * 109.47011 * 185.52177 * 27 25 11 49 49 H 1.08993 * 109.47092 * 305.53107 * 27 25 11 50 50 H 1.07995 * 120.00368 * 179.72682 * 28 6 5 51 51 H 1.08002 * 120.00024 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1972 5 6 2.7240 3.3757 1.1970 6 6 2.9543 4.0273 -0.0001 7 6 3.4566 5.4481 -0.0001 8 6 4.9866 5.4482 -0.0002 9 6 5.4889 6.8690 0.0004 10 8 4.7008 7.7908 0.0014 11 7 6.8139 7.1153 -0.0051 12 6 7.8776 6.0945 -0.0068 13 6 9.1126 6.8077 0.5982 14 6 8.9666 8.2360 0.0101 15 1 9.4508 8.9697 0.6545 16 7 9.5173 8.2968 -1.3462 17 6 10.0453 9.4685 -1.8188 18 1 10.0563 10.3476 -1.1917 19 6 10.5675 9.5259 -3.1038 20 7 10.5546 8.4544 -3.8679 21 14 11.2885 11.1242 -3.7483 22 1 12.7367 11.1798 -3.4247 23 1 11.1074 11.1906 -5.2208 24 1 10.5946 12.2724 -3.1119 25 6 7.4380 8.4465 -0.0169 26 1 7.1276 9.0092 0.8635 27 6 7.0359 9.1985 -1.2872 28 6 2.7184 3.3776 -1.1972 29 6 2.2624 2.0726 -1.1971 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 2.0824 1.5635 2.1324 36 1 2.9036 3.8849 2.1324 37 1 3.0932 5.9620 0.8899 38 1 3.0932 5.9620 -0.8901 39 1 5.3499 4.9343 -0.8901 40 1 5.3500 4.9343 0.8898 41 1 7.5891 5.2450 0.6122 42 1 8.0875 5.7671 -1.0250 43 1 9.0587 6.8260 1.6868 44 1 10.0377 6.3389 0.2627 45 1 9.5078 7.5070 -1.9093 46 1 10.9192 8.4946 -4.7659 47 1 5.9639 9.3954 -1.2688 48 1 7.5779 10.1428 -1.3374 49 1 7.2790 8.5929 -2.1602 50 1 2.8941 3.8882 -2.1325 51 1 2.0817 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987511105.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:54 Heat of formation + Delta-G solvation = -16.732563 kcal Electronic energy + Delta-G solvation = -27822.838168 eV Core-core repulsion = 24107.373912 eV Total energy + Delta-G solvation = -3715.464255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.04760 -39.55339 -37.51187 -35.26839 -33.98085 -32.66962 -31.47297 -31.09014 -30.67987 -29.34438 -28.33161 -25.24751 -25.12839 -23.39660 -22.96296 -22.90154 -21.91780 -20.60108 -19.66195 -18.37360 -17.50194 -16.83444 -16.14751 -16.07441 -15.76619 -15.23899 -15.04783 -14.53987 -14.24835 -13.98197 -13.91893 -13.58587 -13.53725 -13.50626 -13.26075 -13.11189 -12.82275 -12.67674 -12.34169 -12.26371 -12.00193 -11.64066 -11.62826 -11.45701 -11.32235 -11.15965 -10.99261 -10.89187 -10.87551 -10.84021 -10.60390 -10.47907 -10.16451 -10.05366 -9.68085 -9.42003 -9.08199 -8.96858 -8.64601 -8.19023 -7.04513 -5.82921 -3.12002 1.14905 1.24319 2.97317 3.34722 3.40643 3.46809 3.47703 3.60566 4.45319 4.54084 4.55627 4.61937 4.82342 4.84333 4.97593 5.01255 5.02922 5.09312 5.11246 5.21876 5.30527 5.32301 5.37270 5.41870 5.54379 5.55957 5.59085 5.63778 5.73095 5.76421 5.80219 5.80759 5.90040 5.90521 5.97275 6.11271 6.12441 6.25535 6.26615 6.31661 6.42856 6.46948 6.52798 6.59860 6.67544 6.85201 6.86113 7.07445 7.36229 7.65281 7.97658 8.34442 8.54228 9.46733 10.00745 10.36069 11.39160 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022278 B = 0.002090 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.539688 B =13390.853172 C =13662.889605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.082 4.082 7 C -0.065 4.065 8 C -0.129 4.129 9 C 0.523 3.477 10 O -0.549 6.549 11 N -0.605 5.605 12 C 0.103 3.897 13 C -0.145 4.145 14 C 0.170 3.830 15 H 0.074 0.926 16 N -0.709 5.709 17 C -0.239 4.239 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.109 3.891 26 H 0.058 0.942 27 C -0.132 4.132 28 C -0.112 4.112 29 C -0.116 4.116 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.038 0.962 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.123 0.877 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.529 -16.462 10.458 24.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.135 4.135 5 C -0.132 4.132 6 C -0.082 4.082 7 C -0.102 4.102 8 C -0.169 4.169 9 C 0.312 3.688 10 O -0.427 6.427 11 N -0.339 5.339 12 C -0.021 4.021 13 C -0.185 4.185 14 C 0.057 3.943 15 H 0.092 0.908 16 N -0.348 5.348 17 C -0.370 4.370 18 H 0.089 0.911 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.736 3.264 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.003 3.997 26 H 0.076 0.924 27 C -0.190 4.190 28 C -0.130 4.130 29 C -0.134 4.134 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.085 0.915 49 H 0.083 0.917 50 H 0.141 0.859 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.933 -15.800 10.395 24.729 hybrid contribution 0.494 0.520 -0.691 0.996 sum -15.439 -15.280 9.704 23.791 Atomic orbital electron populations 1.21749 0.94807 1.01598 1.02245 1.20535 0.96123 0.92801 1.02749 1.19877 0.99659 0.96220 0.93281 1.20987 1.00212 0.94906 0.97407 1.21056 0.99671 0.94764 0.97677 1.19946 0.98924 0.96151 0.93172 1.20335 0.93524 0.91918 1.04447 1.21617 0.96393 0.94628 1.04287 1.20221 0.80968 0.91170 0.76457 1.90663 1.54519 1.46619 1.50912 1.48667 1.04550 1.08817 1.71872 1.22283 0.87759 0.91021 1.00993 1.23146 0.97478 0.98107 0.99740 1.21261 0.89793 0.94311 0.88920 0.90798 1.42325 1.70052 1.12089 1.10330 1.19196 1.31338 0.89530 0.96953 0.91057 1.24720 1.01752 0.97233 0.96884 1.69648 1.51310 1.27566 1.09292 0.86223 0.78979 0.83113 0.78071 1.21739 1.21833 1.20707 1.22701 0.96090 0.82647 0.98287 0.92425 1.21752 0.98892 1.01007 0.97339 1.21103 0.99346 0.94752 0.97825 1.21012 1.00047 0.94868 0.97466 0.92549 0.92485 0.92593 0.91109 0.91157 0.86334 0.86087 0.90296 0.90177 0.89042 0.89280 0.91595 0.91215 0.91118 0.89547 0.78104 0.93475 0.94275 0.91500 0.91664 0.85933 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16 2 C -0.08 -0.56 6.06 -27.88 -0.17 -0.73 16 3 C -0.09 -0.79 5.13 -104.62 -0.54 -1.33 16 4 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 5 C -0.11 -1.10 9.70 -39.58 -0.38 -1.48 16 6 C -0.08 -0.86 5.13 -104.63 -0.54 -1.40 16 7 C -0.06 -0.75 4.63 -27.88 -0.13 -0.88 16 8 C -0.13 -1.56 4.69 -27.88 -0.13 -1.69 16 9 C 0.52 8.54 7.64 -10.98 -0.08 8.45 16 10 O -0.55 -10.79 15.10 5.56 0.08 -10.71 16 11 N -0.61 -9.94 3.06 -163.01 -0.50 -10.43 16 12 C 0.10 1.44 6.62 -2.53 -0.02 1.42 16 13 C -0.15 -2.12 6.69 -24.58 -0.16 -2.29 16 14 C 0.17 3.13 3.54 -66.09 -0.23 2.90 16 15 H 0.07 1.36 8.06 -51.93 -0.42 0.94 16 16 N -0.71 -16.27 3.84 -51.65 -0.20 -16.47 16 17 C -0.24 -6.21 8.49 -15.06 -0.13 -6.33 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -26.96 13.06 55.49 0.72 -26.24 16 21 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.11 2.00 3.43 -66.95 -0.23 1.77 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 27 C -0.13 -2.77 8.05 37.16 0.30 -2.47 16 28 C -0.11 -1.14 9.70 -39.58 -0.38 -1.53 16 29 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 38 H 0.08 1.01 8.04 -51.93 -0.42 0.60 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 0.92 7.85 -51.93 -0.41 0.51 16 41 H 0.07 0.73 7.49 -51.93 -0.39 0.34 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.38 9.50 7.84 -40.82 -0.32 9.18 16 46 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.04 0.82 7.02 -51.93 -0.36 0.46 16 48 H 0.07 1.47 7.25 -51.93 -0.38 1.09 16 49 H 0.06 1.53 7.55 -51.93 -0.39 1.14 16 50 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 51 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 409.05 15.07 6.16 6.16 Total: -1.00 -30.55 409.05 -11.04 -41.59 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -8.96 Total: 8.62 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -3.32 Total: -9.33 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.03 Total: -53.14 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.55 -11.04 -41.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987511105.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.854 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds