Wall clock time and date at job start Tue Mar 31 2020 16:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46934 * 2 1 4 4 C 1.38237 * 120.00053 * 90.00220 * 3 2 1 5 5 C 1.38235 * 119.99566 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00176 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99717 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47230 * 90.00012 * 7 6 5 9 9 C 1.50701 * 109.47230 * 180.02562 * 8 7 6 10 10 O 1.21273 * 119.99920 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99661 * 180.27584 * 9 8 7 12 12 C 1.47425 * 125.65027 * 359.74822 * 11 9 8 13 13 C 1.54915 * 104.82955 * 204.09350 * 12 11 9 14 14 C 1.55153 * 101.58167 * 322.99081 * 13 12 11 15 15 H 1.08998 * 110.72114 * 154.04749 * 14 13 12 16 16 N 1.46507 * 110.72032 * 277.14095 * 14 13 12 17 17 C 1.36934 * 119.99830 * 209.44651 * 16 14 13 18 18 H 1.07998 * 120.00195 * 0.02562 * 17 16 14 19 19 C 1.38815 * 119.99498 * 179.97438 * 17 16 14 20 20 N 1.31611 * 120.00413 * 0.02562 * 19 17 16 21 21 Si 1.86811 * 119.99662 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47015 * 90.00280 * 21 19 17 23 23 H 1.48503 * 109.46859 * 210.00240 * 21 19 17 24 24 H 1.48497 * 109.47156 * 330.00124 * 21 19 17 25 25 C 1.47025 * 125.64593 * 179.44179 * 11 9 8 26 26 H 1.08999 * 109.88336 * 59.55558 * 25 11 9 27 27 C 1.53004 * 109.88128 * 298.39155 * 25 11 9 28 28 C 1.38230 * 120.00395 * 0.25304 * 6 5 4 29 29 C 1.38232 * 119.99833 * 270.01525 * 3 2 1 30 30 H 1.09005 * 109.47016 * 60.00000 * 1 2 3 31 31 H 1.08999 * 109.47257 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47222 * 300.00634 * 1 2 3 33 33 H 1.08998 * 109.47361 * 240.00316 * 2 1 3 34 34 H 1.09000 * 109.47281 * 119.99310 * 2 1 3 35 35 H 1.07997 * 119.99763 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99395 * 179.97438 * 5 4 3 37 37 H 1.09004 * 109.47333 * 329.99883 * 7 6 5 38 38 H 1.09005 * 109.47145 * 209.99962 * 7 6 5 39 39 H 1.08997 * 109.47222 * 59.99395 * 8 7 6 40 40 H 1.09005 * 109.47016 * 300.00030 * 8 7 6 41 41 H 1.08995 * 110.36548 * 322.92739 * 12 11 9 42 42 H 1.08991 * 110.36509 * 85.14334 * 12 11 9 43 43 H 1.09002 * 111.00244 * 81.06664 * 13 12 11 44 44 H 1.08999 * 111.00011 * 204.87518 * 13 12 11 45 45 H 0.96998 * 119.99614 * 29.44311 * 16 14 13 46 46 H 0.97006 * 120.00281 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.46810 * 65.52691 * 27 25 11 48 48 H 1.08996 * 109.47011 * 185.52177 * 27 25 11 49 49 H 1.08993 * 109.47092 * 305.53107 * 27 25 11 50 50 H 1.07995 * 120.00368 * 179.72682 * 28 6 5 51 51 H 1.08002 * 120.00024 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1972 5 6 2.7240 3.3757 1.1970 6 6 2.9543 4.0273 -0.0001 7 6 3.4566 5.4481 -0.0001 8 6 4.9866 5.4482 -0.0002 9 6 5.4889 6.8690 0.0004 10 8 4.7008 7.7908 0.0014 11 7 6.8139 7.1153 -0.0051 12 6 7.8776 6.0945 -0.0068 13 6 9.1126 6.8077 0.5982 14 6 8.9666 8.2360 0.0101 15 1 9.4508 8.9697 0.6545 16 7 9.5173 8.2968 -1.3462 17 6 10.0453 9.4685 -1.8188 18 1 10.0563 10.3476 -1.1917 19 6 10.5675 9.5259 -3.1038 20 7 10.5546 8.4544 -3.8679 21 14 11.2885 11.1242 -3.7483 22 1 12.7367 11.1798 -3.4247 23 1 11.1074 11.1906 -5.2208 24 1 10.5946 12.2724 -3.1119 25 6 7.4380 8.4465 -0.0169 26 1 7.1276 9.0092 0.8635 27 6 7.0359 9.1985 -1.2872 28 6 2.7184 3.3776 -1.1972 29 6 2.2624 2.0726 -1.1971 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 2.0824 1.5635 2.1324 36 1 2.9036 3.8849 2.1324 37 1 3.0932 5.9620 0.8899 38 1 3.0932 5.9620 -0.8901 39 1 5.3499 4.9343 -0.8901 40 1 5.3500 4.9343 0.8898 41 1 7.5891 5.2450 0.6122 42 1 8.0875 5.7671 -1.0250 43 1 9.0587 6.8260 1.6868 44 1 10.0377 6.3389 0.2627 45 1 9.5078 7.5070 -1.9093 46 1 10.9192 8.4946 -4.7659 47 1 5.9639 9.3954 -1.2688 48 1 7.5779 10.1428 -1.3374 49 1 7.2790 8.5929 -2.1602 50 1 2.8941 3.8882 -2.1325 51 1 2.0817 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987511105.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:53 Heat of formation + Delta-G solvation = -31.466969 kcal Electronic energy + Delta-G solvation = -27823.477099 eV Core-core repulsion = 24107.373912 eV Total energy + Delta-G solvation = -3716.103187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.27661 -40.38461 -38.90479 -36.02161 -35.73733 -33.65016 -33.04544 -32.10727 -31.77929 -30.74014 -29.41150 -26.81937 -26.06534 -25.21039 -23.87889 -23.59381 -22.98143 -21.39670 -20.99925 -19.72857 -19.33737 -18.08126 -17.36380 -16.84727 -16.84236 -16.37209 -16.16383 -15.85906 -15.57284 -15.28227 -15.04755 -14.77410 -14.55698 -14.49680 -14.24824 -14.14711 -14.00594 -13.87966 -13.63899 -13.19144 -13.13119 -13.00246 -12.79293 -12.70173 -12.39055 -12.36010 -12.32569 -12.26310 -12.20134 -11.87656 -11.83179 -11.68651 -11.63252 -11.59825 -11.48841 -10.96121 -10.74769 -9.78471 -9.56516 -9.37641 -8.98659 -7.91615 -5.18118 0.43113 0.54031 1.47951 1.49136 1.56226 1.68974 2.11532 2.57371 2.86256 3.38758 3.53831 3.74790 3.88219 3.89889 3.92033 4.04390 4.08172 4.12556 4.19669 4.27787 4.34076 4.38403 4.42606 4.53792 4.54937 4.58938 4.63947 4.66910 4.68187 4.74308 4.80730 4.85725 4.94312 5.02456 5.08829 5.11077 5.11340 5.14036 5.24577 5.26135 5.27170 5.31813 5.40621 5.50984 5.54306 5.56779 5.59403 5.76802 5.77741 6.16315 6.29874 6.68846 7.23912 7.38005 8.11224 8.35063 9.31266 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022278 B = 0.002090 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.539688 B =13390.853172 C =13662.889605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.093 4.093 7 C -0.057 4.057 8 C -0.117 4.117 9 C 0.517 3.483 10 O -0.588 6.588 11 N -0.608 5.608 12 C 0.103 3.897 13 C -0.131 4.131 14 C 0.161 3.839 15 H 0.077 0.923 16 N -0.716 5.716 17 C -0.226 4.226 18 H 0.075 0.925 19 C -0.071 4.071 20 N -0.966 5.966 21 Si 0.961 3.039 22 H -0.287 1.287 23 H -0.302 1.302 24 H -0.274 1.274 25 C 0.113 3.887 26 H 0.063 0.937 27 C -0.116 4.116 28 C -0.126 4.126 29 C -0.125 4.125 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.087 0.913 45 H 0.375 0.625 46 H 0.248 0.752 47 H 0.031 0.969 48 H 0.051 0.949 49 H 0.035 0.965 50 H 0.122 0.878 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.862 -18.390 12.602 27.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.140 4.140 5 C -0.137 4.137 6 C -0.093 4.093 7 C -0.094 4.094 8 C -0.156 4.156 9 C 0.308 3.692 10 O -0.470 6.470 11 N -0.340 5.340 12 C -0.019 4.019 13 C -0.170 4.170 14 C 0.050 3.950 15 H 0.095 0.905 16 N -0.354 5.354 17 C -0.358 4.358 18 H 0.093 0.907 19 C -0.264 4.264 20 N -0.617 5.617 21 Si 0.791 3.209 22 H -0.214 1.214 23 H -0.229 1.229 24 H -0.199 1.199 25 C 0.007 3.993 26 H 0.081 0.919 27 C -0.175 4.175 28 C -0.144 4.144 29 C -0.143 4.143 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.135 0.865 41 H 0.126 0.874 42 H 0.075 0.925 43 H 0.120 0.880 44 H 0.105 0.895 45 H 0.207 0.793 46 H 0.057 0.943 47 H 0.050 0.950 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.140 0.860 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.270 -17.736 12.592 27.163 hybrid contribution 0.501 1.106 -1.288 1.771 sum -15.768 -16.630 11.304 25.553 Atomic orbital electron populations 1.21737 0.94401 1.02331 1.01787 1.20583 0.96382 0.91557 1.03597 1.20189 0.98821 0.97225 0.93060 1.21261 0.99648 0.94714 0.98336 1.21237 0.99501 0.95207 0.97732 1.19850 1.00177 0.95480 0.93835 1.20199 0.93315 0.92671 1.03253 1.21602 0.96485 0.91630 1.05896 1.21014 0.80449 0.92557 0.75209 1.90645 1.55471 1.48256 1.52601 1.48738 1.05247 1.08408 1.71653 1.22428 0.86761 0.91503 1.01225 1.23077 0.97781 0.94765 1.01351 1.21487 0.89181 0.97397 0.86902 0.90463 1.42417 1.70154 1.10778 1.12042 1.19514 1.29118 0.90500 0.96640 0.90671 1.25382 1.03592 0.99754 0.97630 1.69783 1.53366 1.29246 1.09258 0.85318 0.78353 0.80426 0.76757 1.21444 1.22924 1.19874 1.22442 0.96220 0.83889 0.96795 0.91892 1.21557 0.98070 1.00090 0.97751 1.21221 0.99920 0.95390 0.97844 1.21224 0.99942 0.94634 0.98463 0.93195 0.91187 0.92874 0.90511 0.90099 0.84402 0.84916 0.90883 0.92054 0.88172 0.86527 0.87386 0.92491 0.87985 0.89483 0.79271 0.94309 0.95038 0.93031 0.94581 0.86026 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.89 71.98 0.71 -0.75 16 2 C -0.08 -0.91 6.06 29.85 0.18 -0.73 16 3 C -0.09 -1.44 5.13 -19.86 -0.10 -1.54 16 4 C -0.12 -1.87 9.70 22.27 0.22 -1.66 16 5 C -0.12 -2.06 9.70 22.27 0.22 -1.84 16 6 C -0.09 -1.86 5.13 -19.87 -0.10 -1.96 16 7 C -0.06 -1.28 4.63 29.85 0.14 -1.14 16 8 C -0.12 -2.59 4.69 29.85 0.14 -2.45 16 9 C 0.52 16.36 7.64 87.66 0.67 17.03 16 10 O -0.59 -23.28 15.10 -3.01 -0.05 -23.33 16 11 N -0.61 -19.05 3.06 -788.04 -2.41 -21.47 16 12 C 0.10 2.60 6.62 86.86 0.57 3.17 16 13 C -0.13 -3.44 6.69 31.99 0.21 -3.22 16 14 C 0.16 5.75 3.54 46.18 0.16 5.91 16 15 H 0.08 2.71 8.06 -2.39 -0.02 2.70 16 16 N -0.72 -32.91 3.84 -317.31 -1.22 -34.13 16 17 C -0.23 -11.76 8.49 84.03 0.71 -11.05 16 18 H 0.08 3.80 7.83 -2.91 -0.02 3.77 16 19 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 20 N -0.97 -57.25 13.06 21.65 0.28 -56.96 16 21 Si 0.96 45.54 29.55 68.60 2.03 47.56 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 25 C 0.11 4.10 3.43 45.34 0.16 4.25 16 26 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 27 C -0.12 -5.01 8.05 71.98 0.58 -4.43 16 28 C -0.13 -2.46 9.70 22.27 0.22 -2.25 16 29 C -0.12 -2.14 9.70 22.27 0.22 -1.92 16 30 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 34 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 35 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 37 H 0.07 1.72 8.04 -2.38 -0.02 1.70 16 38 H 0.06 1.59 8.04 -2.38 -0.02 1.57 16 39 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.12 1.98 7.85 -2.38 -0.02 1.96 16 41 H 0.11 1.88 7.49 -2.39 -0.02 1.87 16 42 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.37 18.72 7.84 -92.71 -0.73 17.99 16 46 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 47 H 0.03 1.36 7.02 -2.39 -0.02 1.34 16 48 H 0.05 2.32 7.25 -2.39 -0.02 2.30 16 49 H 0.04 1.73 7.55 -2.39 -0.02 1.71 16 50 H 0.12 2.29 8.06 -2.91 -0.02 2.27 16 51 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -67.47 409.05 4.17 -63.30 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.17 Total: 33.08 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 5.37 Total: -8.05 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -3.35 Total: -112.55 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.05 Total: -23.33 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -67.47 4.17 -63.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987511105.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.834 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds