Wall clock time and date at job start Tue Mar 31 2020 16:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46811 * 2 1 4 4 C 1.38230 * 119.99819 * 90.00391 * 3 2 1 5 5 C 1.38244 * 119.99588 * 180.02562 * 4 3 2 6 6 C 1.38231 * 119.99911 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.99630 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47092 * 90.00150 * 7 6 5 9 9 C 1.50700 * 109.46859 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00293 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99801 * 179.97438 * 9 8 7 12 12 C 1.47431 * 125.64867 * 359.96307 * 11 9 8 13 13 C 1.55121 * 104.94044 * 156.03153 * 12 11 9 14 14 C 1.55157 * 101.48716 * 36.77708 * 13 12 11 15 15 H 1.09004 * 110.71892 * 83.16742 * 14 13 12 16 16 N 1.46499 * 110.72113 * 206.26358 * 14 13 12 17 17 C 1.36935 * 119.99938 * 271.15795 * 16 14 13 18 18 H 1.08000 * 120.00518 * 359.72965 * 17 16 14 19 19 C 1.38817 * 119.99990 * 179.97438 * 17 16 14 20 20 N 1.31617 * 119.99869 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47028 * 60.00888 * 21 19 17 23 23 H 1.48503 * 109.46851 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47412 * 300.00497 * 21 19 17 25 25 C 1.47020 * 125.64893 * 180.02562 * 11 9 8 26 26 H 1.09005 * 109.88089 * 300.43761 * 25 11 9 27 27 C 1.53001 * 109.88498 * 61.60437 * 25 11 9 28 28 C 1.38236 * 120.00292 * 0.25853 * 6 5 4 29 29 C 1.38233 * 119.99815 * 269.97512 * 3 2 1 30 30 H 1.08995 * 109.46938 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46706 * 299.99735 * 1 2 3 32 32 H 1.08991 * 109.46936 * 60.00091 * 1 2 3 33 33 H 1.08993 * 109.47346 * 240.00004 * 2 1 3 34 34 H 1.09004 * 109.47274 * 119.99855 * 2 1 3 35 35 H 1.07999 * 120.00631 * 359.96842 * 4 3 2 36 36 H 1.08006 * 119.99732 * 179.97438 * 5 4 3 37 37 H 1.08994 * 109.47323 * 329.99793 * 7 6 5 38 38 H 1.08996 * 109.46895 * 209.99915 * 7 6 5 39 39 H 1.09006 * 109.47205 * 59.99988 * 8 7 6 40 40 H 1.08995 * 109.47216 * 300.00194 * 8 7 6 41 41 H 1.08998 * 110.36380 * 274.74299 * 12 11 9 42 42 H 1.09001 * 110.36534 * 36.95805 * 12 11 9 43 43 H 1.08995 * 110.93692 * 278.78469 * 13 12 11 44 44 H 1.08996 * 111.16175 * 154.87182 * 13 12 11 45 45 H 0.96999 * 119.99984 * 91.15730 * 16 14 13 46 46 H 0.96996 * 119.99743 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.46825 * 177.81143 * 27 25 11 48 48 H 1.09000 * 109.46946 * 297.81069 * 27 25 11 49 49 H 1.09000 * 109.46735 * 57.80861 * 27 25 11 50 50 H 1.07999 * 120.00254 * 179.72798 * 28 6 5 51 51 H 1.07999 * 119.99971 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7230 3.3760 1.1971 6 6 2.9532 4.0276 -0.0001 7 6 3.4544 5.4489 -0.0001 8 6 4.9844 5.4502 0.0004 9 6 5.4855 6.8714 -0.0002 10 8 4.6966 7.7926 -0.0005 11 7 6.8104 7.1188 0.0007 12 6 7.8749 6.0988 0.0029 13 6 9.1117 6.8102 -0.6058 14 6 8.9621 8.2411 -0.0248 15 1 9.3751 8.2935 0.9826 16 7 9.6058 9.2252 -0.8986 17 6 10.9292 9.5319 -0.7262 18 1 11.4973 9.0516 0.0567 19 6 11.5392 10.4640 -1.5545 20 7 10.8455 11.0533 -2.5051 21 14 13.3443 10.8829 -1.3188 22 1 14.1639 9.6570 -1.4937 23 1 13.7518 11.8987 -2.3226 24 1 13.5521 11.4266 0.0473 25 6 7.4334 8.4505 0.0007 26 1 7.1207 9.0061 -0.8834 27 6 7.0333 9.2121 1.2659 28 6 2.7182 3.3776 -1.1972 29 6 2.2631 2.0723 -1.1972 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0824 1.5635 2.1325 36 1 2.9026 3.8853 2.1324 37 1 3.0903 5.9626 0.8896 38 1 3.0910 5.9623 -0.8902 39 1 5.3485 4.9365 -0.8894 40 1 5.3479 4.9367 0.8905 41 1 8.0894 5.7768 1.0219 42 1 7.5844 5.2460 -0.6106 43 1 9.0572 6.8229 -1.6943 44 1 10.0383 6.3463 -0.2680 45 1 9.0945 9.6595 -1.5992 46 1 11.2717 11.7049 -3.0836 47 1 7.5295 10.1826 1.2779 48 1 5.9529 9.3562 1.2769 49 1 7.3325 8.6401 2.1442 50 1 2.8939 3.8882 -2.1325 51 1 2.0832 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987511106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:57 Heat of formation + Delta-G solvation = -20.464448 kcal Electronic energy + Delta-G solvation = -27402.588509 eV Core-core repulsion = 23686.962427 eV Total energy + Delta-G solvation = -3715.626082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.14813 -39.62620 -37.51631 -35.33859 -34.12180 -32.78366 -31.56927 -31.15157 -30.87654 -29.48436 -28.56165 -25.28913 -25.18897 -23.23411 -22.96397 -22.91294 -21.97895 -20.65111 -20.03893 -18.68483 -17.28315 -16.99964 -16.27541 -16.14870 -15.85368 -15.32021 -15.07344 -14.80103 -14.31045 -14.05235 -13.93894 -13.61595 -13.60970 -13.39997 -13.36221 -13.14647 -12.97028 -12.70886 -12.39008 -12.17563 -12.02047 -11.86129 -11.72062 -11.65472 -11.58079 -11.23771 -11.16797 -11.06554 -10.99455 -10.96169 -10.83722 -10.58717 -10.27580 -10.04012 -9.77460 -9.54464 -9.14327 -8.95189 -8.71451 -8.37776 -7.04386 -5.82458 -3.12983 1.08545 1.18175 2.82546 3.16357 3.40727 3.45462 3.46523 3.52712 4.38506 4.50064 4.52606 4.53958 4.76316 4.78234 4.88774 4.97779 4.99136 5.01512 5.05384 5.16919 5.25191 5.27495 5.31460 5.35403 5.44827 5.49711 5.51696 5.58441 5.60513 5.67787 5.69839 5.75382 5.79937 5.84594 5.90436 5.95259 6.04142 6.10580 6.13020 6.20372 6.30031 6.37144 6.45563 6.46277 6.58493 6.61732 6.74933 6.79054 6.91918 7.64029 7.79954 8.34361 8.38241 9.46218 10.00869 10.35632 11.39603 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028913 B = 0.001863 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.177481 B =15024.340555 C =15353.103522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.083 4.083 7 C -0.065 4.065 8 C -0.129 4.129 9 C 0.525 3.475 10 O -0.545 6.545 11 N -0.610 5.610 12 C 0.098 3.902 13 C -0.156 4.156 14 C 0.176 3.824 15 H 0.065 0.935 16 N -0.714 5.714 17 C -0.245 4.245 18 H 0.072 0.928 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.126 3.874 26 H 0.076 0.924 27 C -0.153 4.153 28 C -0.113 4.113 29 C -0.116 4.116 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.386 0.614 46 H 0.257 0.743 47 H 0.069 0.931 48 H 0.061 0.939 49 H 0.049 0.951 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.894 -21.816 6.503 28.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.083 4.083 7 C -0.103 4.103 8 C -0.169 4.169 9 C 0.313 3.687 10 O -0.423 6.423 11 N -0.344 5.344 12 C -0.025 4.025 13 C -0.197 4.197 14 C 0.064 3.936 15 H 0.083 0.917 16 N -0.355 5.355 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.022 3.978 26 H 0.094 0.906 27 C -0.211 4.211 28 C -0.131 4.131 29 C -0.134 4.134 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.220 0.780 46 H 0.067 0.933 47 H 0.088 0.912 48 H 0.080 0.920 49 H 0.068 0.932 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.203 -21.269 6.536 28.748 hybrid contribution 0.996 0.293 -0.206 1.058 sum -17.207 -20.976 6.330 27.859 Atomic orbital electron populations 1.21749 0.94773 1.01633 1.02253 1.20538 0.96153 0.92774 1.02763 1.19883 0.99560 0.96243 0.93278 1.20999 1.00132 0.94902 0.97442 1.21069 0.99575 0.94755 0.97702 1.19934 0.99069 0.96103 0.93191 1.20339 0.93390 0.92004 1.04535 1.21612 0.96507 0.94327 1.04409 1.20265 0.80748 0.91335 0.76324 1.90681 1.54413 1.46646 1.50599 1.48616 1.04801 1.08642 1.72318 1.22409 0.88259 0.91329 1.00507 1.23601 0.95554 0.99056 1.01502 1.21245 0.88555 0.88777 0.95015 0.91689 1.42339 1.09285 1.46559 1.37285 1.19167 0.86304 1.18970 1.13181 0.91045 1.24766 0.98245 0.99343 0.98249 1.69654 1.35669 1.30939 1.21465 0.86251 0.84849 0.77763 0.77185 1.21211 1.21672 1.21197 1.21916 0.94184 0.82804 0.98881 0.90564 1.22033 1.02008 1.00561 0.96548 1.21087 0.99460 0.94742 0.97763 1.21008 1.00077 0.94873 0.97468 0.92462 0.92574 0.92550 0.91113 0.91135 0.86292 0.86040 0.90199 0.90147 0.89017 0.89075 0.91788 0.91347 0.90684 0.90560 0.77994 0.93321 0.91205 0.92021 0.93191 0.85976 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.90 37.16 0.37 -0.44 16 2 C -0.08 -0.51 6.06 -27.88 -0.17 -0.68 16 3 C -0.09 -0.72 5.13 -104.62 -0.54 -1.26 16 4 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 5 C -0.11 -1.01 9.70 -39.58 -0.38 -1.39 16 6 C -0.08 -0.80 5.13 -104.62 -0.54 -1.33 16 7 C -0.06 -0.68 4.64 -27.88 -0.13 -0.81 16 8 C -0.13 -1.38 4.69 -27.88 -0.13 -1.51 16 9 C 0.52 7.86 7.64 -10.99 -0.08 7.78 16 10 O -0.55 -10.02 15.03 5.56 0.08 -9.93 16 11 N -0.61 -9.29 3.07 -162.88 -0.50 -9.79 16 12 C 0.10 1.26 6.70 -2.41 -0.02 1.25 16 13 C -0.16 -2.51 6.79 -24.47 -0.17 -2.68 16 14 C 0.18 3.35 3.12 -66.10 -0.21 3.15 16 15 H 0.07 1.24 7.81 -51.93 -0.41 0.84 16 16 N -0.71 -17.30 5.24 -51.65 -0.27 -17.57 16 17 C -0.25 -6.56 9.97 -15.06 -0.15 -6.71 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 20 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 21 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.13 2.24 3.21 -66.96 -0.22 2.03 16 26 H 0.08 1.54 7.70 -51.93 -0.40 1.14 16 27 C -0.15 -2.59 9.09 37.16 0.34 -2.26 16 28 C -0.11 -1.03 9.70 -39.58 -0.38 -1.41 16 29 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.08 0.88 8.04 -51.93 -0.42 0.47 16 38 H 0.08 0.91 8.04 -51.93 -0.42 0.50 16 39 H 0.09 0.89 7.85 -51.93 -0.41 0.49 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.73 7.47 -51.93 -0.39 0.35 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.39 10.11 7.53 -40.82 -0.31 9.81 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 48 H 0.06 1.08 6.90 -51.93 -0.36 0.72 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 51 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 412.81 15.07 6.22 6.22 Total: -1.00 -31.11 412.81 -11.02 -42.12 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -8.98 Total: 8.33 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -3.27 Total: -9.36 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.05 Total: -54.22 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.11 -11.02 -42.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987511106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.659 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds