Wall clock time and date at job start Tue Mar 31 2020 16:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46811 * 2 1 4 4 C 1.38230 * 119.99819 * 90.00391 * 3 2 1 5 5 C 1.38244 * 119.99588 * 180.02562 * 4 3 2 6 6 C 1.38231 * 119.99911 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.99630 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47092 * 90.00150 * 7 6 5 9 9 C 1.50700 * 109.46859 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00293 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99801 * 179.97438 * 9 8 7 12 12 C 1.47431 * 125.64867 * 359.96307 * 11 9 8 13 13 C 1.55121 * 104.94044 * 156.03153 * 12 11 9 14 14 C 1.55157 * 101.48716 * 36.77708 * 13 12 11 15 15 H 1.09004 * 110.71892 * 83.16742 * 14 13 12 16 16 N 1.46499 * 110.72113 * 206.26358 * 14 13 12 17 17 C 1.36935 * 119.99938 * 271.15795 * 16 14 13 18 18 H 1.08000 * 120.00518 * 359.72965 * 17 16 14 19 19 C 1.38817 * 119.99990 * 179.97438 * 17 16 14 20 20 N 1.31617 * 119.99869 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99909 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47028 * 60.00888 * 21 19 17 23 23 H 1.48503 * 109.46851 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47412 * 300.00497 * 21 19 17 25 25 C 1.47020 * 125.64893 * 180.02562 * 11 9 8 26 26 H 1.09005 * 109.88089 * 300.43761 * 25 11 9 27 27 C 1.53001 * 109.88498 * 61.60437 * 25 11 9 28 28 C 1.38236 * 120.00292 * 0.25853 * 6 5 4 29 29 C 1.38233 * 119.99815 * 269.97512 * 3 2 1 30 30 H 1.08995 * 109.46938 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46706 * 299.99735 * 1 2 3 32 32 H 1.08991 * 109.46936 * 60.00091 * 1 2 3 33 33 H 1.08993 * 109.47346 * 240.00004 * 2 1 3 34 34 H 1.09004 * 109.47274 * 119.99855 * 2 1 3 35 35 H 1.07999 * 120.00631 * 359.96842 * 4 3 2 36 36 H 1.08006 * 119.99732 * 179.97438 * 5 4 3 37 37 H 1.08994 * 109.47323 * 329.99793 * 7 6 5 38 38 H 1.08996 * 109.46895 * 209.99915 * 7 6 5 39 39 H 1.09006 * 109.47205 * 59.99988 * 8 7 6 40 40 H 1.08995 * 109.47216 * 300.00194 * 8 7 6 41 41 H 1.08998 * 110.36380 * 274.74299 * 12 11 9 42 42 H 1.09001 * 110.36534 * 36.95805 * 12 11 9 43 43 H 1.08995 * 110.93692 * 278.78469 * 13 12 11 44 44 H 1.08996 * 111.16175 * 154.87182 * 13 12 11 45 45 H 0.96999 * 119.99984 * 91.15730 * 16 14 13 46 46 H 0.96996 * 119.99743 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.46825 * 177.81143 * 27 25 11 48 48 H 1.09000 * 109.46946 * 297.81069 * 27 25 11 49 49 H 1.09000 * 109.46735 * 57.80861 * 27 25 11 50 50 H 1.07999 * 120.00254 * 179.72798 * 28 6 5 51 51 H 1.07999 * 119.99971 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7230 3.3760 1.1971 6 6 2.9532 4.0276 -0.0001 7 6 3.4544 5.4489 -0.0001 8 6 4.9844 5.4502 0.0004 9 6 5.4855 6.8714 -0.0002 10 8 4.6966 7.7926 -0.0005 11 7 6.8104 7.1188 0.0007 12 6 7.8749 6.0988 0.0029 13 6 9.1117 6.8102 -0.6058 14 6 8.9621 8.2411 -0.0248 15 1 9.3751 8.2935 0.9826 16 7 9.6058 9.2252 -0.8986 17 6 10.9292 9.5319 -0.7262 18 1 11.4973 9.0516 0.0567 19 6 11.5392 10.4640 -1.5545 20 7 10.8455 11.0533 -2.5051 21 14 13.3443 10.8829 -1.3188 22 1 14.1639 9.6570 -1.4937 23 1 13.7518 11.8987 -2.3226 24 1 13.5521 11.4266 0.0473 25 6 7.4334 8.4505 0.0007 26 1 7.1207 9.0061 -0.8834 27 6 7.0333 9.2121 1.2659 28 6 2.7182 3.3776 -1.1972 29 6 2.2631 2.0723 -1.1972 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0824 1.5635 2.1325 36 1 2.9026 3.8853 2.1324 37 1 3.0903 5.9626 0.8896 38 1 3.0910 5.9623 -0.8902 39 1 5.3485 4.9365 -0.8894 40 1 5.3479 4.9367 0.8905 41 1 8.0894 5.7768 1.0219 42 1 7.5844 5.2460 -0.6106 43 1 9.0572 6.8229 -1.6943 44 1 10.0383 6.3463 -0.2680 45 1 9.0945 9.6595 -1.5992 46 1 11.2717 11.7049 -3.0836 47 1 7.5295 10.1826 1.2779 48 1 5.9529 9.3562 1.2769 49 1 7.3325 8.6401 2.1442 50 1 2.8939 3.8882 -2.1325 51 1 2.0832 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987511106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:56 Heat of formation + Delta-G solvation = -36.079388 kcal Electronic energy + Delta-G solvation = -27403.265623 eV Core-core repulsion = 23686.962427 eV Total energy + Delta-G solvation = -3716.303197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.30340 -40.37362 -38.85592 -36.02853 -35.89683 -33.72108 -33.10024 -32.20761 -31.76904 -30.91277 -29.47953 -26.84609 -26.09673 -24.78879 -23.91589 -23.58439 -22.98378 -21.60503 -21.20246 -19.96237 -19.11849 -18.15534 -17.41608 -16.87787 -16.75050 -16.53768 -16.20119 -15.91961 -15.56627 -15.36110 -14.88780 -14.65951 -14.58530 -14.49144 -14.25826 -14.20810 -13.93644 -13.85588 -13.52125 -13.27399 -13.18658 -13.11118 -12.88449 -12.72879 -12.61481 -12.50226 -12.34341 -12.28757 -12.20117 -12.09360 -11.86583 -11.71387 -11.62984 -11.59234 -11.53434 -10.92807 -10.78503 -9.77462 -9.64532 -9.36894 -9.02560 -7.93715 -5.23839 0.43889 0.55037 1.49443 1.52294 1.58200 1.65525 1.98116 2.57899 2.86935 3.36479 3.47776 3.75198 3.78860 3.90340 3.92683 4.02023 4.07980 4.14272 4.18838 4.20557 4.31120 4.36838 4.39495 4.42956 4.52569 4.54349 4.60688 4.65036 4.67265 4.67930 4.73958 4.79275 4.92175 4.97385 5.05322 5.09405 5.11492 5.11885 5.21704 5.24239 5.25774 5.28077 5.36580 5.40847 5.47359 5.54797 5.57632 5.77631 5.78604 6.17167 6.26248 6.61380 7.18376 7.32692 8.05026 8.28865 9.29545 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028913 B = 0.001863 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.177481 B =15024.340555 C =15353.103522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.123 4.123 5 C -0.120 4.120 6 C -0.093 4.093 7 C -0.058 4.058 8 C -0.115 4.115 9 C 0.520 3.480 10 O -0.586 6.586 11 N -0.611 5.611 12 C 0.106 3.894 13 C -0.148 4.148 14 C 0.170 3.830 15 H 0.070 0.930 16 N -0.729 5.729 17 C -0.239 4.239 18 H 0.083 0.917 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.974 3.026 22 H -0.275 1.275 23 H -0.300 1.300 24 H -0.278 1.278 25 C 0.131 3.869 26 H 0.041 0.959 27 C -0.143 4.143 28 C -0.123 4.123 29 C -0.124 4.124 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.054 0.946 44 H 0.089 0.911 45 H 0.370 0.630 46 H 0.250 0.750 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.069 0.931 50 H 0.126 0.874 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.694 -25.107 8.060 31.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.141 4.141 5 C -0.138 4.138 6 C -0.093 4.093 7 C -0.096 4.096 8 C -0.155 4.155 9 C 0.311 3.689 10 O -0.467 6.467 11 N -0.345 5.345 12 C -0.016 4.016 13 C -0.189 4.189 14 C 0.060 3.940 15 H 0.088 0.912 16 N -0.369 5.369 17 C -0.371 4.371 18 H 0.101 0.899 19 C -0.268 4.268 20 N -0.622 5.622 21 Si 0.803 3.197 22 H -0.201 1.201 23 H -0.227 1.227 24 H -0.204 1.204 25 C 0.026 3.974 26 H 0.059 0.941 27 C -0.201 4.201 28 C -0.141 4.141 29 C -0.142 4.142 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.154 0.846 36 H 0.149 0.851 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.202 0.798 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.088 0.912 50 H 0.144 0.856 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.005 -24.633 8.140 31.578 hybrid contribution 0.832 1.255 -0.656 1.642 sum -17.173 -23.378 7.484 29.957 Atomic orbital electron populations 1.21737 0.94462 1.02302 1.01776 1.20581 0.96334 0.91643 1.03574 1.20181 0.98830 0.97192 0.93113 1.21250 0.99755 0.94768 0.98322 1.21237 0.99551 0.95182 0.97814 1.19847 1.00220 0.95472 0.93792 1.20212 0.93379 0.92632 1.03353 1.21613 0.96405 0.91195 1.06278 1.21084 0.80083 0.92748 0.75016 1.90667 1.55372 1.48349 1.52309 1.48689 1.05572 1.07931 1.72279 1.22554 0.85609 0.90906 1.02560 1.23417 0.98090 0.97108 1.00301 1.21447 0.88822 0.89324 0.94422 0.91180 1.42515 1.08776 1.47808 1.37755 1.19602 0.87338 1.17766 1.12362 0.89870 1.25586 1.02387 1.00148 0.98644 1.69830 1.37271 1.32137 1.22923 0.85198 0.80132 0.77420 0.76908 1.20081 1.22687 1.20384 1.21608 0.93627 0.84336 0.97788 0.94054 1.21920 1.01156 1.00106 0.96938 1.21227 0.99774 0.95257 0.97860 1.21231 0.99907 0.94720 0.98378 0.91247 0.92969 0.93116 0.90424 0.90235 0.84645 0.85128 0.91134 0.91693 0.87325 0.86603 0.88835 0.88182 0.92720 0.89244 0.79798 0.94143 0.92580 0.92949 0.91208 0.85636 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.90 71.98 0.71 -0.61 16 2 C -0.08 -0.81 6.06 29.85 0.18 -0.63 16 3 C -0.09 -1.30 5.13 -19.87 -0.10 -1.41 16 4 C -0.12 -1.75 9.70 22.27 0.22 -1.54 16 5 C -0.12 -1.91 9.70 22.27 0.22 -1.69 16 6 C -0.09 -1.65 5.13 -19.86 -0.10 -1.76 16 7 C -0.06 -1.17 4.64 29.85 0.14 -1.03 16 8 C -0.12 -2.20 4.69 29.85 0.14 -2.06 16 9 C 0.52 14.99 7.64 87.66 0.67 15.66 16 10 O -0.59 -21.81 15.03 -3.03 -0.05 -21.85 16 11 N -0.61 -17.70 3.07 -787.62 -2.42 -20.12 16 12 C 0.11 2.35 6.70 86.93 0.58 2.93 16 13 C -0.15 -4.51 6.79 32.06 0.22 -4.29 16 14 C 0.17 6.37 3.12 46.18 0.14 6.52 16 15 H 0.07 2.57 7.81 -2.38 -0.02 2.56 16 16 N -0.73 -35.98 5.24 -317.33 -1.66 -37.64 16 17 C -0.24 -12.80 9.97 84.04 0.84 -11.96 16 18 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 19 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 20 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 21 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 C 0.13 4.70 3.21 45.34 0.15 4.85 16 26 H 0.04 1.77 7.70 -2.38 -0.02 1.75 16 27 C -0.14 -4.86 9.09 71.98 0.65 -4.20 16 28 C -0.12 -2.09 9.70 22.27 0.22 -1.87 16 29 C -0.12 -1.87 9.70 22.27 0.22 -1.65 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 34 H 0.08 0.64 8.09 -2.38 -0.02 0.62 16 35 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 36 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.07 1.53 8.04 -2.39 -0.02 1.51 16 38 H 0.06 1.49 8.04 -2.39 -0.02 1.47 16 39 H 0.11 1.76 7.85 -2.38 -0.02 1.74 16 40 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.10 1.68 7.47 -2.39 -0.02 1.66 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.37 20.29 7.53 -92.71 -0.70 19.59 16 46 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 47 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.05 1.86 6.90 -2.39 -0.02 1.85 16 49 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 50 H 0.13 1.94 8.06 -2.91 -0.02 1.91 16 51 H 0.13 1.55 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -69.25 412.81 3.93 -65.32 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.19 Total: 34.62 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 5.55 Total: -8.53 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -3.79 Total: -116.83 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -69.25 3.93 -65.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987511106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.242 kcal (2) G-P(sol) polarization free energy of solvation -69.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds