Wall clock time and date at job start Tue Mar 31 2020 16:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47201 * 2 1 4 4 C 1.38230 * 120.00008 * 90.00172 * 3 2 1 5 5 C 1.38234 * 120.00333 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99715 * 359.96146 * 5 4 3 7 7 C 1.50700 * 120.00039 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47208 * 89.99734 * 7 6 5 9 9 C 1.50700 * 109.47208 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99803 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.27843 * 9 8 7 12 12 C 1.47419 * 125.65146 * 359.74383 * 11 9 8 13 13 C 1.54911 * 104.83630 * 204.09512 * 12 11 9 14 14 C 1.55156 * 101.57846 * 322.99597 * 13 12 11 15 15 H 1.09001 * 110.71751 * 277.13125 * 14 13 12 16 16 N 1.46502 * 110.72044 * 153.86324 * 14 13 12 17 17 C 1.36935 * 119.99931 * 86.45140 * 16 14 13 18 18 H 1.08005 * 120.00025 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99994 * 180.02562 * 17 16 14 20 20 N 1.31623 * 120.00067 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00093 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47159 * 89.99928 * 21 19 17 23 23 H 1.48499 * 109.47465 * 210.00270 * 21 19 17 24 24 H 1.48505 * 109.47074 * 330.00022 * 21 19 17 25 25 C 1.47028 * 125.64354 * 179.44686 * 11 9 8 26 26 H 1.09007 * 109.87760 * 298.38550 * 25 11 9 27 27 C 1.52987 * 109.88486 * 59.55412 * 25 11 9 28 28 C 1.38235 * 120.00039 * 0.27250 * 6 5 4 29 29 C 1.38232 * 119.99846 * 359.51489 * 28 6 5 30 30 H 1.08992 * 109.47198 * 59.99780 * 1 2 3 31 31 H 1.08996 * 109.47088 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46549 * 299.99682 * 1 2 3 33 33 H 1.09007 * 109.46549 * 240.00318 * 2 1 3 34 34 H 1.08998 * 109.47449 * 120.00593 * 2 1 3 35 35 H 1.08000 * 119.99842 * 359.97438 * 4 3 2 36 36 H 1.07998 * 120.00037 * 179.97438 * 5 4 3 37 37 H 1.09000 * 109.47500 * 329.99737 * 7 6 5 38 38 H 1.08998 * 109.47585 * 209.99732 * 7 6 5 39 39 H 1.09009 * 109.46730 * 59.99906 * 8 7 6 40 40 H 1.08998 * 109.46846 * 300.00451 * 8 7 6 41 41 H 1.08998 * 110.36747 * 322.93640 * 12 11 9 42 42 H 1.09003 * 110.36475 * 85.25954 * 12 11 9 43 43 H 1.09001 * 110.99900 * 81.06373 * 13 12 11 44 44 H 1.08996 * 111.00203 * 204.91981 * 13 12 11 45 45 H 0.96990 * 120.00236 * 266.45126 * 16 14 13 46 46 H 0.96994 * 119.99786 * 179.97438 * 20 19 17 47 47 H 1.09006 * 109.47592 * 58.54982 * 27 25 11 48 48 H 1.08998 * 109.47403 * 178.54379 * 27 25 11 49 49 H 1.08998 * 109.47610 * 298.54642 * 27 25 11 50 50 H 1.08005 * 120.00237 * 179.73208 * 28 6 5 51 51 H 1.08002 * 120.00172 * 180.25421 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7241 3.3755 1.1972 6 6 2.9557 4.0267 0.0000 7 6 3.4581 5.4475 0.0000 8 6 4.9881 5.4475 0.0017 9 6 5.4905 6.8684 0.0023 10 8 4.7023 7.7902 0.0011 11 7 6.8156 7.1145 -0.0019 12 6 7.8792 6.0938 -0.0020 13 6 9.1136 6.8070 0.6041 14 6 8.9683 8.2351 0.0153 15 1 9.3791 8.2800 -0.9934 16 7 9.6144 9.2221 0.8840 17 6 10.9502 9.4883 0.7427 18 1 11.5273 8.9709 -0.0095 19 6 11.5625 10.4232 1.5661 20 7 12.8465 10.6787 1.4307 21 14 10.5642 11.3185 2.8665 22 1 10.5978 10.5468 4.1347 23 1 11.1421 12.6676 3.0924 24 1 9.1587 11.4530 2.4060 25 6 7.4397 8.4457 -0.0134 26 1 7.1542 8.9811 -0.9190 27 6 7.0027 9.2360 1.2215 28 6 2.7207 3.3768 -1.1971 29 6 2.2636 2.0722 -1.1971 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.0824 1.5634 2.1324 36 1 2.9037 3.8847 2.1325 37 1 3.0939 5.9618 0.8894 38 1 3.0958 5.9611 -0.8905 39 1 5.3524 4.9333 -0.8878 40 1 5.3505 4.9340 0.8922 41 1 7.5899 5.2445 0.6169 42 1 8.0916 5.7674 -1.0201 43 1 9.0585 6.8257 1.6925 44 1 10.0390 6.3385 0.2692 45 1 9.0960 9.6871 1.5592 46 1 13.2743 11.3322 2.0058 47 1 7.2865 8.6903 2.1214 48 1 7.4891 10.2114 1.2197 49 1 5.9210 9.3694 1.2036 50 1 2.8976 3.8870 -2.1325 51 1 2.0839 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987511107.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:00 Heat of formation + Delta-G solvation = -8.940860 kcal Electronic energy + Delta-G solvation = -27600.536961 eV Core-core repulsion = 23885.410580 eV Total energy + Delta-G solvation = -3715.126382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.26452 -39.70951 -37.73332 -35.38196 -34.34114 -32.81285 -31.73169 -31.18750 -30.83964 -29.78175 -28.65692 -25.50758 -25.32812 -23.39192 -22.99999 -22.76565 -22.22815 -20.69186 -19.55964 -18.70208 -17.97132 -17.13316 -16.30716 -16.19574 -15.77411 -15.51321 -15.21926 -14.90629 -14.28357 -14.20530 -14.04445 -13.93469 -13.65113 -13.56375 -13.34204 -13.16606 -12.81704 -12.71940 -12.54833 -12.18187 -12.07731 -11.98576 -11.74620 -11.71459 -11.66667 -11.40953 -11.29139 -11.18388 -11.06851 -11.00420 -10.91397 -10.56957 -10.33959 -10.08082 -9.71147 -9.53662 -9.17883 -8.99557 -8.75246 -8.48896 -7.35172 -5.83475 -3.20209 1.04863 1.14680 2.73311 3.06912 3.33201 3.36239 3.42055 3.48627 4.33830 4.46837 4.47259 4.53294 4.72618 4.74681 4.82026 4.91651 4.93665 4.96262 4.96519 5.13611 5.16853 5.18642 5.24777 5.26196 5.38997 5.40989 5.49425 5.50722 5.53647 5.55579 5.63500 5.67493 5.72085 5.81304 5.84442 5.86551 5.90602 5.99240 6.02373 6.16581 6.17220 6.33958 6.37610 6.41446 6.48942 6.56416 6.57713 6.75392 6.83345 7.69163 7.91856 8.28251 8.35391 9.12897 9.85195 10.04097 11.34396 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.029187 B = 0.001962 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.111508 B =14267.069748 C =14454.192189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.116 4.116 5 C -0.113 4.113 6 C -0.084 4.084 7 C -0.065 4.065 8 C -0.129 4.129 9 C 0.526 3.474 10 O -0.545 6.545 11 N -0.611 5.611 12 C 0.097 3.903 13 C -0.152 4.152 14 C 0.179 3.821 15 H 0.071 0.929 16 N -0.741 5.741 17 C -0.248 4.248 18 H 0.092 0.908 19 C 0.009 3.991 20 N -0.930 5.930 21 Si 0.879 3.121 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.276 1.276 25 C 0.126 3.874 26 H 0.074 0.926 27 C -0.164 4.164 28 C -0.113 4.113 29 C -0.116 4.116 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.368 0.632 46 H 0.260 0.740 47 H 0.055 0.945 48 H 0.072 0.928 49 H 0.065 0.935 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.646 -21.220 -3.618 31.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.134 4.134 5 C -0.131 4.131 6 C -0.084 4.084 7 C -0.102 4.102 8 C -0.169 4.169 9 C 0.314 3.686 10 O -0.423 6.423 11 N -0.345 5.345 12 C -0.026 4.026 13 C -0.193 4.193 14 C 0.068 3.932 15 H 0.089 0.911 16 N -0.386 5.386 17 C -0.378 4.378 18 H 0.110 0.890 19 C -0.188 4.188 20 N -0.577 5.577 21 Si 0.709 3.291 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.202 1.202 25 C 0.022 3.978 26 H 0.092 0.908 27 C -0.222 4.222 28 C -0.131 4.131 29 C -0.134 4.134 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.204 0.796 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.884 -20.693 -3.685 31.072 hybrid contribution -0.396 0.608 1.018 1.250 sum -23.280 -20.085 -2.667 30.862 Atomic orbital electron populations 1.21749 0.94761 1.01656 1.02247 1.20542 0.96163 0.92756 1.02793 1.19888 0.99496 0.96248 0.93270 1.21008 1.00043 0.94895 0.97484 1.21077 0.99489 0.94778 0.97732 1.19921 0.99162 0.96073 0.93202 1.20336 0.93337 0.92065 1.04509 1.21619 0.96542 0.94211 1.04496 1.20286 0.80668 0.91399 0.76206 1.90680 1.54493 1.46586 1.50551 1.48640 1.04905 1.08442 1.72485 1.22403 0.88120 0.91317 1.00769 1.23504 0.95958 0.98505 1.01372 1.21146 0.88431 0.88549 0.95121 0.91100 1.42964 1.08268 1.46845 1.40529 1.19055 0.83427 1.19076 1.16213 0.89044 1.24648 0.95586 0.99242 0.99282 1.69691 1.09141 1.37271 1.41642 0.86661 0.79825 0.79882 0.82757 1.20972 1.21542 1.20183 1.21819 0.94124 0.82967 0.98845 0.90770 1.22079 1.02006 1.00651 0.97455 1.21070 0.99555 0.94756 0.97698 1.21005 1.00100 0.94878 0.97466 0.92562 0.92440 0.92567 0.91102 0.91101 0.86256 0.86021 0.90197 0.90184 0.88960 0.88987 0.91190 0.91430 0.90760 0.90088 0.79592 0.92957 0.92604 0.90954 0.91602 0.86019 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.90 37.16 0.37 -0.41 16 2 C -0.09 -0.50 6.06 -27.88 -0.17 -0.67 16 3 C -0.09 -0.69 5.13 -104.63 -0.54 -1.23 16 4 C -0.12 -0.94 9.70 -39.59 -0.38 -1.32 16 5 C -0.11 -0.99 9.70 -39.58 -0.38 -1.37 16 6 C -0.08 -0.77 5.13 -104.62 -0.54 -1.30 16 7 C -0.06 -0.65 4.64 -27.88 -0.13 -0.77 16 8 C -0.13 -1.30 4.69 -27.88 -0.13 -1.43 16 9 C 0.53 7.42 7.63 -10.98 -0.08 7.33 16 10 O -0.55 -9.49 14.87 5.55 0.08 -9.41 16 11 N -0.61 -8.74 3.08 -163.01 -0.50 -9.24 16 12 C 0.10 1.17 6.69 -2.53 -0.02 1.15 16 13 C -0.15 -2.34 6.77 -24.58 -0.17 -2.50 16 14 C 0.18 3.26 3.45 -66.09 -0.23 3.03 16 15 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 16 N -0.74 -16.82 4.82 -51.64 -0.25 -17.07 16 17 C -0.25 -6.72 10.46 -15.06 -0.16 -6.88 16 18 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 19 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 20 N -0.93 -28.57 13.97 55.49 0.78 -27.79 16 21 Si 0.88 21.74 27.73 -169.99 -4.71 17.03 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.43 6.50 56.52 0.37 -6.07 16 25 C 0.13 2.11 3.49 -66.95 -0.23 1.88 16 26 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 27 C -0.16 -2.88 7.93 37.15 0.29 -2.58 16 28 C -0.11 -0.97 9.70 -39.58 -0.38 -1.35 16 29 C -0.12 -0.93 9.70 -39.58 -0.38 -1.31 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 33 H 0.07 0.37 8.09 -51.92 -0.42 -0.05 16 34 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 38 H 0.08 0.84 8.04 -51.93 -0.42 0.43 16 39 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.09 0.83 7.85 -51.93 -0.41 0.42 16 41 H 0.07 0.70 7.49 -51.93 -0.39 0.31 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.37 8.31 2.80 -40.82 -0.11 8.19 16 46 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.05 0.98 8.05 -51.93 -0.42 0.56 16 48 H 0.07 1.35 6.72 -51.93 -0.35 1.01 16 49 H 0.07 1.16 6.74 -51.93 -0.35 0.81 16 50 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 51 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 405.24 15.07 6.11 6.11 Total: -1.00 -31.97 405.24 -10.65 -42.62 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -8.79 Total: 7.35 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -3.36 Total: -9.59 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.02 Total: -54.10 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.08 Total: -9.41 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.97 -10.65 -42.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987511107.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.676 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds