Wall clock time and date at job start Tue Mar 31 2020 16:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47201 * 2 1 4 4 C 1.38230 * 120.00008 * 90.00172 * 3 2 1 5 5 C 1.38234 * 120.00333 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99715 * 359.96146 * 5 4 3 7 7 C 1.50700 * 120.00039 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47208 * 89.99734 * 7 6 5 9 9 C 1.50700 * 109.47208 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99803 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.27843 * 9 8 7 12 12 C 1.47419 * 125.65146 * 359.74383 * 11 9 8 13 13 C 1.54911 * 104.83630 * 204.09512 * 12 11 9 14 14 C 1.55156 * 101.57846 * 322.99597 * 13 12 11 15 15 H 1.09001 * 110.71751 * 277.13125 * 14 13 12 16 16 N 1.46502 * 110.72044 * 153.86324 * 14 13 12 17 17 C 1.36935 * 119.99931 * 86.45140 * 16 14 13 18 18 H 1.08005 * 120.00025 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99994 * 180.02562 * 17 16 14 20 20 N 1.31623 * 120.00067 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00093 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47159 * 89.99928 * 21 19 17 23 23 H 1.48499 * 109.47465 * 210.00270 * 21 19 17 24 24 H 1.48505 * 109.47074 * 330.00022 * 21 19 17 25 25 C 1.47028 * 125.64354 * 179.44686 * 11 9 8 26 26 H 1.09007 * 109.87760 * 298.38550 * 25 11 9 27 27 C 1.52987 * 109.88486 * 59.55412 * 25 11 9 28 28 C 1.38235 * 120.00039 * 0.27250 * 6 5 4 29 29 C 1.38232 * 119.99846 * 359.51489 * 28 6 5 30 30 H 1.08992 * 109.47198 * 59.99780 * 1 2 3 31 31 H 1.08996 * 109.47088 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46549 * 299.99682 * 1 2 3 33 33 H 1.09007 * 109.46549 * 240.00318 * 2 1 3 34 34 H 1.08998 * 109.47449 * 120.00593 * 2 1 3 35 35 H 1.08000 * 119.99842 * 359.97438 * 4 3 2 36 36 H 1.07998 * 120.00037 * 179.97438 * 5 4 3 37 37 H 1.09000 * 109.47500 * 329.99737 * 7 6 5 38 38 H 1.08998 * 109.47585 * 209.99732 * 7 6 5 39 39 H 1.09009 * 109.46730 * 59.99906 * 8 7 6 40 40 H 1.08998 * 109.46846 * 300.00451 * 8 7 6 41 41 H 1.08998 * 110.36747 * 322.93640 * 12 11 9 42 42 H 1.09003 * 110.36475 * 85.25954 * 12 11 9 43 43 H 1.09001 * 110.99900 * 81.06373 * 13 12 11 44 44 H 1.08996 * 111.00203 * 204.91981 * 13 12 11 45 45 H 0.96990 * 120.00236 * 266.45126 * 16 14 13 46 46 H 0.96994 * 119.99786 * 179.97438 * 20 19 17 47 47 H 1.09006 * 109.47592 * 58.54982 * 27 25 11 48 48 H 1.08998 * 109.47403 * 178.54379 * 27 25 11 49 49 H 1.08998 * 109.47610 * 298.54642 * 27 25 11 50 50 H 1.08005 * 120.00237 * 179.73208 * 28 6 5 51 51 H 1.08002 * 120.00172 * 180.25421 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7241 3.3755 1.1972 6 6 2.9557 4.0267 0.0000 7 6 3.4581 5.4475 0.0000 8 6 4.9881 5.4475 0.0017 9 6 5.4905 6.8684 0.0023 10 8 4.7023 7.7902 0.0011 11 7 6.8156 7.1145 -0.0019 12 6 7.8792 6.0938 -0.0020 13 6 9.1136 6.8070 0.6041 14 6 8.9683 8.2351 0.0153 15 1 9.3791 8.2800 -0.9934 16 7 9.6144 9.2221 0.8840 17 6 10.9502 9.4883 0.7427 18 1 11.5273 8.9709 -0.0095 19 6 11.5625 10.4232 1.5661 20 7 12.8465 10.6787 1.4307 21 14 10.5642 11.3185 2.8665 22 1 10.5978 10.5468 4.1347 23 1 11.1421 12.6676 3.0924 24 1 9.1587 11.4530 2.4060 25 6 7.4397 8.4457 -0.0134 26 1 7.1542 8.9811 -0.9190 27 6 7.0027 9.2360 1.2215 28 6 2.7207 3.3768 -1.1971 29 6 2.2636 2.0722 -1.1971 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.0824 1.5634 2.1324 36 1 2.9037 3.8847 2.1325 37 1 3.0939 5.9618 0.8894 38 1 3.0958 5.9611 -0.8905 39 1 5.3524 4.9333 -0.8878 40 1 5.3505 4.9340 0.8922 41 1 7.5899 5.2445 0.6169 42 1 8.0916 5.7674 -1.0201 43 1 9.0585 6.8257 1.6925 44 1 10.0390 6.3385 0.2692 45 1 9.0960 9.6871 1.5592 46 1 13.2743 11.3322 2.0058 47 1 7.2865 8.6903 2.1214 48 1 7.4891 10.2114 1.2197 49 1 5.9210 9.3694 1.2036 50 1 2.8976 3.8870 -2.1325 51 1 2.0839 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987511107.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:59 Heat of formation + Delta-G solvation = -25.266172 kcal Electronic energy + Delta-G solvation = -27601.244880 eV Core-core repulsion = 23885.410580 eV Total energy + Delta-G solvation = -3715.834300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.38593 -40.39431 -39.00990 -36.06030 -35.99964 -33.83828 -33.26634 -32.13075 -31.77133 -31.20035 -29.50434 -26.94025 -26.18677 -24.88449 -23.92192 -23.58698 -23.10409 -21.34697 -20.88577 -20.03441 -19.79188 -18.22191 -17.30137 -16.87868 -16.81902 -16.55598 -16.31757 -16.05694 -15.78937 -15.46418 -14.94372 -14.74782 -14.58179 -14.47934 -14.30093 -14.06000 -14.02988 -13.81583 -13.64001 -13.44658 -13.19385 -13.12445 -13.04681 -12.85684 -12.65443 -12.63960 -12.34703 -12.29474 -12.23088 -11.93225 -11.85958 -11.72443 -11.63214 -11.59269 -11.55292 -10.98129 -10.79246 -9.77730 -9.67189 -9.37003 -9.32401 -8.02972 -5.36282 0.43712 0.54832 1.36018 1.37070 1.44071 1.64881 1.95999 2.46144 2.86685 3.26219 3.43505 3.55197 3.74050 3.84778 3.91044 3.94618 4.08223 4.11282 4.14065 4.20114 4.30399 4.33527 4.34212 4.39303 4.48895 4.53854 4.58692 4.61390 4.64733 4.67619 4.73770 4.81282 4.82128 4.95558 5.02148 5.08958 5.11024 5.11114 5.13578 5.23609 5.25180 5.27856 5.31590 5.40312 5.46972 5.57435 5.77335 5.77486 5.78364 6.16977 6.21006 6.58783 7.06050 7.17423 7.81687 7.99813 9.18027 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.029187 B = 0.001962 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.111508 B =14267.069748 C =14454.192189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.125 4.125 5 C -0.122 4.122 6 C -0.093 4.093 7 C -0.058 4.058 8 C -0.117 4.117 9 C 0.523 3.477 10 O -0.583 6.583 11 N -0.611 5.611 12 C 0.105 3.895 13 C -0.146 4.146 14 C 0.168 3.832 15 H 0.067 0.933 16 N -0.747 5.747 17 C -0.226 4.226 18 H 0.066 0.934 19 C -0.058 4.058 20 N -0.979 5.979 21 Si 0.939 3.061 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.256 1.256 25 C 0.132 3.868 26 H 0.067 0.933 27 C -0.156 4.156 28 C -0.121 4.121 29 C -0.124 4.124 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.369 0.631 46 H 0.257 0.743 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.062 0.938 50 H 0.130 0.870 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.598 -23.784 -3.538 34.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.143 4.143 5 C -0.140 4.140 6 C -0.093 4.093 7 C -0.095 4.095 8 C -0.156 4.156 9 C 0.313 3.687 10 O -0.464 6.464 11 N -0.345 5.345 12 C -0.017 4.017 13 C -0.186 4.186 14 C 0.059 3.941 15 H 0.085 0.915 16 N -0.392 5.392 17 C -0.356 4.356 18 H 0.084 0.916 19 C -0.250 4.250 20 N -0.630 5.630 21 Si 0.767 3.233 22 H -0.204 1.204 23 H -0.223 1.223 24 H -0.181 1.181 25 C 0.027 3.973 26 H 0.086 0.914 27 C -0.214 4.214 28 C -0.139 4.139 29 C -0.142 4.142 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.206 0.794 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.081 0.919 50 H 0.148 0.852 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.885 -23.316 -3.625 34.294 hybrid contribution 0.164 1.318 0.897 1.602 sum -24.721 -21.999 -2.728 33.204 Atomic orbital electron populations 1.21737 0.94458 1.02296 1.01783 1.20582 0.96344 0.91696 1.03550 1.20176 0.98859 0.97161 0.93146 1.21235 0.99883 0.94816 0.98332 1.21230 0.99699 0.95219 0.97894 1.19856 1.00183 0.95563 0.93720 1.20213 0.93385 0.92533 1.03412 1.21622 0.96373 0.91345 1.06297 1.21027 0.79994 0.92692 0.74941 1.90668 1.55356 1.48155 1.52172 1.48690 1.05579 1.07739 1.72472 1.22519 0.85567 0.91009 1.02581 1.23338 0.98066 0.96510 1.00734 1.21355 0.89167 0.89251 0.94359 0.91517 1.42965 1.06756 1.48086 1.41392 1.19035 0.85036 1.17319 1.14257 0.91629 1.25358 0.96575 1.00948 1.02097 1.69852 1.11074 1.38725 1.43335 0.85661 0.79253 0.78140 0.80208 1.20413 1.22265 1.18115 1.21557 0.93029 0.84519 0.98178 0.91443 1.21978 1.01571 1.00031 0.97860 1.21239 0.99587 0.95163 0.97876 1.21246 0.99822 0.94801 0.98303 0.92979 0.91276 0.93076 0.90305 0.90416 0.84930 0.85470 0.91470 0.91198 0.86795 0.87179 0.87908 0.89043 0.91790 0.89752 0.79442 0.93395 0.92596 0.92380 0.91884 0.85194 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.90 71.98 0.71 -0.55 16 2 C -0.08 -0.79 6.06 29.85 0.18 -0.60 16 3 C -0.09 -1.25 5.13 -19.87 -0.10 -1.36 16 4 C -0.12 -1.77 9.70 22.27 0.22 -1.55 16 5 C -0.12 -1.92 9.70 22.27 0.22 -1.71 16 6 C -0.09 -1.54 5.13 -19.87 -0.10 -1.64 16 7 C -0.06 -1.06 4.64 29.85 0.14 -0.92 16 8 C -0.12 -2.01 4.69 29.85 0.14 -1.87 16 9 C 0.52 13.64 7.63 87.66 0.67 14.31 16 10 O -0.58 -19.80 14.87 -3.04 -0.05 -19.84 16 11 N -0.61 -16.00 3.08 -788.04 -2.43 -18.42 16 12 C 0.11 2.15 6.69 86.86 0.58 2.73 16 13 C -0.15 -4.17 6.77 31.99 0.22 -3.95 16 14 C 0.17 5.96 3.45 46.18 0.16 6.12 16 15 H 0.07 2.43 8.12 -2.39 -0.02 2.41 16 16 N -0.75 -33.54 4.82 -317.31 -1.53 -35.07 16 17 C -0.23 -12.36 10.46 84.03 0.88 -11.48 16 18 H 0.07 3.88 8.06 -2.91 -0.02 3.85 16 19 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 20 N -0.98 -61.69 13.97 21.65 0.30 -61.38 16 21 Si 0.94 45.20 27.73 68.60 1.90 47.10 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 24 H -0.26 -11.33 6.50 99.48 0.65 -10.68 16 25 C 0.13 4.26 3.49 45.34 0.16 4.42 16 26 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 27 C -0.16 -5.35 7.93 71.98 0.57 -4.78 16 28 C -0.12 -1.83 9.70 22.27 0.22 -1.62 16 29 C -0.12 -1.70 9.70 22.27 0.22 -1.48 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.08 0.61 8.09 -2.38 -0.02 0.59 16 34 H 0.08 0.62 8.09 -2.39 -0.02 0.60 16 35 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.07 1.39 8.04 -2.39 -0.02 1.37 16 38 H 0.07 1.41 8.04 -2.39 -0.02 1.39 16 39 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.11 1.55 7.85 -2.39 -0.02 1.53 16 41 H 0.10 1.52 7.49 -2.39 -0.02 1.50 16 42 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.37 16.33 2.80 -92.72 -0.26 16.07 16 46 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 47 H 0.05 1.88 8.05 -2.38 -0.02 1.86 16 48 H 0.06 2.13 6.72 -2.39 -0.02 2.11 16 49 H 0.06 2.19 6.74 -2.39 -0.02 2.17 16 50 H 0.13 1.67 8.06 -2.91 -0.02 1.64 16 51 H 0.13 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -70.28 405.24 4.31 -65.97 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.57 Total: 30.47 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 5.53 Total: -8.82 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -3.65 Total: -114.88 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.05 Total: -19.84 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Total: -70.28 4.31 -65.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987511107.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.706 kcal (2) G-P(sol) polarization free energy of solvation -70.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds