Wall clock time and date at job start Tue Mar 31 2020 16:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47643 * 2 1 4 4 C 1.38379 * 119.85418 * 264.99976 * 3 2 1 5 5 C 1.37932 * 120.14757 * 179.97438 * 4 3 2 6 6 C 1.39600 * 119.85012 * 359.97438 * 5 4 3 7 7 C 1.47853 * 120.14316 * 179.97438 * 6 5 4 8 8 O 1.21549 * 119.99659 * 207.27366 * 7 6 5 9 9 N 1.34773 * 119.99850 * 27.27254 * 7 6 5 10 10 C 1.47425 * 125.65120 * 356.22798 * 9 7 6 11 11 C 1.54900 * 104.83052 * 155.83602 * 10 9 7 12 12 C 1.55158 * 101.58480 * 37.01085 * 11 10 9 13 13 H 1.08994 * 110.72123 * 83.03829 * 12 11 10 14 14 N 1.46507 * 110.72016 * 206.13517 * 12 11 10 15 15 C 1.36934 * 119.99479 * 273.54119 * 14 12 11 16 16 H 1.07999 * 120.00772 * 0.02562 * 15 14 12 17 17 C 1.38815 * 119.99686 * 179.97438 * 15 14 12 18 18 N 1.31615 * 120.00400 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00088 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.46711 * 269.99883 * 19 17 15 21 21 H 1.48505 * 109.46880 * 29.99156 * 19 17 15 22 22 H 1.48492 * 109.47452 * 149.99369 * 19 17 15 23 23 C 1.47021 * 125.64438 * 176.18553 * 9 7 6 24 24 H 1.09004 * 109.88253 * 61.67815 * 23 9 7 25 25 C 1.53002 * 109.88629 * 300.51339 * 23 9 7 26 26 C 1.39555 * 119.71384 * 0.25081 * 6 5 4 27 27 C 1.37983 * 119.85048 * 359.51604 * 26 6 5 28 28 C 1.50702 * 119.92898 * 180.23210 * 27 26 6 29 29 C 1.53005 * 109.46704 * 265.25419 * 28 27 26 30 30 H 1.08995 * 109.47677 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46601 * 300.00407 * 1 2 3 32 32 H 1.09002 * 109.47061 * 59.99409 * 1 2 3 33 33 H 1.09001 * 109.47107 * 239.99743 * 2 1 3 34 34 H 1.09002 * 109.47061 * 120.00591 * 2 1 3 35 35 H 1.08003 * 119.93022 * 359.97438 * 4 3 2 36 36 H 1.07997 * 120.08066 * 180.02562 * 5 4 3 37 37 H 1.08995 * 110.36412 * 36.99525 * 10 9 7 38 38 H 1.09002 * 110.36419 * 274.67248 * 10 9 7 39 39 H 1.08997 * 111.00893 * 278.93315 * 11 10 9 40 40 H 1.09007 * 111.04085 * 155.09478 * 11 10 9 41 41 H 0.96995 * 119.99887 * 93.54256 * 14 12 11 42 42 H 0.96993 * 120.00717 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.46618 * 302.19353 * 25 23 9 44 44 H 1.09005 * 109.46857 * 62.18886 * 25 23 9 45 45 H 1.08994 * 109.47310 * 182.19490 * 25 23 9 46 46 H 1.08001 * 120.07667 * 179.74551 * 26 6 5 47 47 H 1.08998 * 109.46867 * 25.24926 * 28 27 26 48 48 H 1.08995 * 109.47159 * 145.25682 * 28 27 26 49 49 H 1.08999 * 109.46701 * 179.97438 * 29 28 27 50 50 H 1.08998 * 109.47056 * 299.99391 * 29 28 27 51 51 H 1.08995 * 109.47098 * 60.00226 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.3608 2.0353 -1.1956 5 6 2.8207 3.3356 -1.2027 6 6 2.9542 4.0320 -0.0001 7 6 3.4472 5.4259 -0.0001 8 8 4.0252 5.8661 0.9743 9 7 3.2557 6.2084 -1.0807 10 6 2.6442 5.7823 -2.3526 11 6 2.0947 7.0854 -2.9845 12 6 3.1896 8.1103 -2.5868 13 1 4.0254 8.0722 -3.2853 14 7 2.6330 9.4639 -2.5207 15 6 2.5692 10.2338 -3.6513 16 1 2.9287 9.8431 -4.5918 17 6 2.0414 11.5162 -3.5888 18 7 1.9795 12.2561 -4.6755 19 14 1.4189 12.1918 -1.9623 20 1 -0.0202 11.8598 -1.8067 21 1 2.1900 11.5859 -0.8471 22 1 1.5920 13.6664 -1.9400 23 6 3.6214 7.6285 -1.1857 24 1 4.6992 7.7433 -1.0701 25 6 2.8909 8.4349 -0.1101 26 6 2.6259 3.4048 1.2025 27 6 2.1623 2.1052 1.1952 28 6 1.8023 1.4280 2.4924 29 6 2.9995 0.6182 2.9943 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.2566 1.4956 -2.1253 36 1 3.0762 3.8143 -2.1364 37 1 1.8323 5.0793 -2.1664 38 1 3.3949 5.3327 -3.0026 39 1 1.1317 7.3543 -2.5505 40 1 2.0205 6.9939 -4.0682 41 1 2.3099 9.8147 -1.6761 42 1 1.6110 13.1523 -4.6318 43 1 1.8152 8.2985 -0.2216 44 1 3.2007 8.0893 0.8762 45 1 3.1363 9.4913 -0.2186 46 1 2.7309 3.9367 2.1366 47 1 1.5367 2.1813 3.2340 48 1 0.9548 0.7618 2.3315 49 1 2.7392 0.1287 3.9328 50 1 3.2651 -0.1352 2.2527 51 1 3.8470 1.2844 3.1553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987623264.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:03 Heat of formation + Delta-G solvation = 5.548462 kcal Electronic energy + Delta-G solvation = -28699.783728 eV Core-core repulsion = 24985.285651 eV Total energy + Delta-G solvation = -3714.498078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.71859 -39.46506 -37.55464 -35.13511 -34.24796 -33.73314 -31.84268 -30.91301 -30.24909 -29.85781 -28.78101 -25.65229 -25.10563 -24.17039 -23.03984 -22.85653 -21.84426 -21.00796 -19.82835 -18.83873 -17.96650 -17.04049 -16.43205 -16.05841 -15.78659 -15.53581 -14.73914 -14.59460 -14.24615 -14.12886 -14.04784 -13.92932 -13.85906 -13.57487 -13.26524 -12.92300 -12.89773 -12.74014 -12.67311 -12.35522 -12.09791 -11.91467 -11.77775 -11.66037 -11.60068 -11.43383 -11.42648 -11.18853 -11.04677 -10.94014 -10.78218 -10.57267 -10.31618 -10.09060 -9.75561 -9.56766 -9.05944 -8.99047 -8.80152 -8.49557 -7.35136 -5.83372 -3.20180 0.75245 1.16063 2.78725 3.03069 3.33443 3.36495 3.42308 3.64085 4.33983 4.41499 4.50060 4.53435 4.60958 4.68850 4.84878 4.91136 4.97349 5.00851 5.07461 5.11576 5.16964 5.18531 5.27298 5.31398 5.35382 5.45338 5.48075 5.51279 5.52206 5.58469 5.64754 5.65900 5.73426 5.81794 5.84002 5.85831 5.88891 5.98799 6.00811 6.13648 6.14786 6.21165 6.36344 6.37603 6.48046 6.54901 6.57337 6.71437 6.82561 7.63979 7.91718 8.24595 8.35411 9.12800 9.85106 10.03954 11.34500 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021823 B = 0.002618 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.749683 B =10691.209804 C =11183.940126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.060 4.060 4 C -0.124 4.124 5 C -0.100 4.100 6 C -0.125 4.125 7 C 0.571 3.429 8 O -0.541 6.541 9 N -0.603 5.603 10 C 0.089 3.911 11 C -0.154 4.154 12 C 0.179 3.821 13 H 0.073 0.927 14 N -0.741 5.741 15 C -0.248 4.248 16 H 0.092 0.908 17 C 0.009 3.991 18 N -0.930 5.930 19 Si 0.878 3.122 20 H -0.283 1.283 21 H -0.275 1.275 22 H -0.289 1.289 23 C 0.127 3.873 24 H 0.077 0.923 25 C -0.164 4.164 26 C -0.059 4.059 27 C -0.090 4.090 28 C -0.087 4.087 29 C -0.148 4.148 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.141 0.859 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.368 0.632 42 H 0.260 0.740 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.131 0.869 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.058 0.942 50 H 0.056 0.944 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.229 -27.218 10.408 29.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.128 4.128 3 C -0.061 4.061 4 C -0.142 4.142 5 C -0.118 4.118 6 C -0.128 4.128 7 C 0.360 3.640 8 O -0.419 6.419 9 N -0.336 5.336 10 C -0.033 4.033 11 C -0.195 4.195 12 C 0.068 3.932 13 H 0.091 0.909 14 N -0.386 5.386 15 C -0.378 4.378 16 H 0.110 0.890 17 C -0.188 4.188 18 N -0.578 5.578 19 Si 0.708 3.292 20 H -0.210 1.210 21 H -0.202 1.202 22 H -0.215 1.215 23 C 0.024 3.976 24 H 0.095 0.905 25 C -0.222 4.222 26 C -0.078 4.078 27 C -0.090 4.090 28 C -0.124 4.124 29 C -0.206 4.206 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.145 0.855 36 H 0.159 0.841 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.204 0.796 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.149 0.851 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.077 0.923 50 H 0.075 0.925 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.884 -26.872 10.753 28.957 hybrid contribution -0.527 0.691 0.902 1.253 sum -1.411 -26.181 11.655 28.692 Atomic orbital electron populations 1.21766 0.94516 1.01795 1.02477 1.20651 0.96377 0.92621 1.03128 1.19921 0.97470 0.96050 0.92629 1.20978 1.00690 0.94880 0.97636 1.21881 0.97295 0.94647 0.98013 1.19875 1.04216 0.94244 0.94453 1.17958 0.79427 0.84855 0.81753 1.90753 1.42546 1.74922 1.33688 1.48459 1.60145 1.11342 1.13612 1.22761 0.97117 0.98758 0.84709 1.23551 1.00959 0.93846 1.01126 1.21156 0.94529 0.85422 0.92084 0.90945 1.42982 1.74519 1.11865 1.09247 1.19050 1.35067 0.95133 0.88504 0.89022 1.24649 1.00987 0.96603 0.96516 1.69684 1.51042 1.10394 1.26632 0.86665 0.79145 0.78654 0.84686 1.20962 1.20164 1.21545 1.21838 0.99273 0.79169 0.97357 0.90516 1.22084 1.00507 1.00706 0.98926 1.21070 0.95587 0.93764 0.97384 1.19657 1.00547 0.93875 0.94911 1.20595 0.98773 0.99365 0.93710 1.21774 0.98010 1.00017 1.00763 0.92305 0.92365 0.92351 0.90938 0.90497 0.85540 0.84119 0.90353 0.91114 0.90659 0.89978 0.79574 0.92942 0.92495 0.91725 0.90726 0.85145 0.90936 0.90549 0.92338 0.92475 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.72 37.16 0.36 -0.51 16 2 C -0.09 -0.58 5.37 -27.88 -0.15 -0.73 16 3 C -0.06 -0.53 5.14 -104.53 -0.54 -1.07 16 4 C -0.12 -1.12 9.66 -39.64 -0.38 -1.51 16 5 C -0.10 -1.07 7.94 -39.19 -0.31 -1.38 16 6 C -0.12 -1.63 5.70 -104.96 -0.60 -2.23 16 7 C 0.57 9.10 7.40 -12.33 -0.09 9.00 16 8 O -0.54 -10.25 15.70 5.32 0.08 -10.17 16 9 N -0.60 -9.15 3.08 -164.12 -0.51 -9.66 16 10 C 0.09 1.12 5.02 -2.53 -0.01 1.11 16 11 C -0.15 -2.39 6.77 -24.59 -0.17 -2.55 16 12 C 0.18 3.28 3.46 -66.09 -0.23 3.05 16 13 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 14 N -0.74 -16.84 4.82 -51.65 -0.25 -17.09 16 15 C -0.25 -6.71 10.46 -15.06 -0.16 -6.87 16 16 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 17 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 18 N -0.93 -28.59 13.97 55.49 0.78 -27.82 16 19 Si 0.88 21.76 27.74 -169.99 -4.71 17.05 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.43 6.45 56.52 0.36 -6.07 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 C 0.13 2.17 3.46 -66.95 -0.23 1.94 16 24 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 25 C -0.16 -2.92 7.95 37.16 0.30 -2.62 16 26 C -0.06 -0.71 9.22 -39.18 -0.36 -1.07 16 27 C -0.09 -0.87 5.13 -104.68 -0.54 -1.41 16 28 C -0.09 -0.65 5.38 -27.88 -0.15 -0.80 16 29 C -0.15 -1.00 9.72 37.16 0.36 -0.64 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.36 6.79 -51.93 -0.35 0.01 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.40 8.05 -51.93 -0.42 -0.02 16 34 H 0.08 0.44 5.60 -51.93 -0.29 0.15 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 36 H 0.14 1.34 4.56 -52.49 -0.24 1.10 16 37 H 0.08 0.87 6.15 -51.93 -0.32 0.55 16 38 H 0.07 0.75 7.30 -51.93 -0.38 0.37 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.37 8.32 2.79 -40.82 -0.11 8.21 16 42 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 43 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 44 H 0.06 1.15 6.88 -51.93 -0.36 0.80 16 45 H 0.07 1.40 6.60 -51.93 -0.34 1.06 16 46 H 0.13 1.60 7.88 -52.49 -0.41 1.19 16 47 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 48 H 0.08 0.48 5.59 -51.93 -0.29 0.19 16 49 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.06 0.36 6.79 -51.93 -0.35 0.01 16 51 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -32.14 389.62 -9.84 -41.98 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -8.11 Total: 7.95 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -2.99 Total: -8.12 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.02 Total: -54.56 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.05 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.14 -9.84 -41.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987623264.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.527 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds