Wall clock time and date at job start Tue Mar 31 2020 16:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47643 * 2 1 4 4 C 1.38379 * 119.85418 * 264.99976 * 3 2 1 5 5 C 1.37932 * 120.14757 * 179.97438 * 4 3 2 6 6 C 1.39600 * 119.85012 * 359.97438 * 5 4 3 7 7 C 1.47853 * 120.14316 * 179.97438 * 6 5 4 8 8 O 1.21549 * 119.99659 * 207.27366 * 7 6 5 9 9 N 1.34773 * 119.99850 * 27.27254 * 7 6 5 10 10 C 1.47425 * 125.65120 * 356.22798 * 9 7 6 11 11 C 1.54900 * 104.83052 * 155.83602 * 10 9 7 12 12 C 1.55158 * 101.58480 * 37.01085 * 11 10 9 13 13 H 1.08994 * 110.72123 * 83.03829 * 12 11 10 14 14 N 1.46507 * 110.72016 * 206.13517 * 12 11 10 15 15 C 1.36934 * 119.99479 * 273.54119 * 14 12 11 16 16 H 1.07999 * 120.00772 * 0.02562 * 15 14 12 17 17 C 1.38815 * 119.99686 * 179.97438 * 15 14 12 18 18 N 1.31615 * 120.00400 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00088 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.46711 * 269.99883 * 19 17 15 21 21 H 1.48505 * 109.46880 * 29.99156 * 19 17 15 22 22 H 1.48492 * 109.47452 * 149.99369 * 19 17 15 23 23 C 1.47021 * 125.64438 * 176.18553 * 9 7 6 24 24 H 1.09004 * 109.88253 * 61.67815 * 23 9 7 25 25 C 1.53002 * 109.88629 * 300.51339 * 23 9 7 26 26 C 1.39555 * 119.71384 * 0.25081 * 6 5 4 27 27 C 1.37983 * 119.85048 * 359.51604 * 26 6 5 28 28 C 1.50702 * 119.92898 * 180.23210 * 27 26 6 29 29 C 1.53005 * 109.46704 * 265.25419 * 28 27 26 30 30 H 1.08995 * 109.47677 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46601 * 300.00407 * 1 2 3 32 32 H 1.09002 * 109.47061 * 59.99409 * 1 2 3 33 33 H 1.09001 * 109.47107 * 239.99743 * 2 1 3 34 34 H 1.09002 * 109.47061 * 120.00591 * 2 1 3 35 35 H 1.08003 * 119.93022 * 359.97438 * 4 3 2 36 36 H 1.07997 * 120.08066 * 180.02562 * 5 4 3 37 37 H 1.08995 * 110.36412 * 36.99525 * 10 9 7 38 38 H 1.09002 * 110.36419 * 274.67248 * 10 9 7 39 39 H 1.08997 * 111.00893 * 278.93315 * 11 10 9 40 40 H 1.09007 * 111.04085 * 155.09478 * 11 10 9 41 41 H 0.96995 * 119.99887 * 93.54256 * 14 12 11 42 42 H 0.96993 * 120.00717 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.46618 * 302.19353 * 25 23 9 44 44 H 1.09005 * 109.46857 * 62.18886 * 25 23 9 45 45 H 1.08994 * 109.47310 * 182.19490 * 25 23 9 46 46 H 1.08001 * 120.07667 * 179.74551 * 26 6 5 47 47 H 1.08998 * 109.46867 * 25.24926 * 28 27 26 48 48 H 1.08995 * 109.47159 * 145.25682 * 28 27 26 49 49 H 1.08999 * 109.46701 * 179.97438 * 29 28 27 50 50 H 1.08998 * 109.47056 * 299.99391 * 29 28 27 51 51 H 1.08995 * 109.47098 * 60.00226 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.3608 2.0353 -1.1956 5 6 2.8207 3.3356 -1.2027 6 6 2.9542 4.0320 -0.0001 7 6 3.4472 5.4259 -0.0001 8 8 4.0252 5.8661 0.9743 9 7 3.2557 6.2084 -1.0807 10 6 2.6442 5.7823 -2.3526 11 6 2.0947 7.0854 -2.9845 12 6 3.1896 8.1103 -2.5868 13 1 4.0254 8.0722 -3.2853 14 7 2.6330 9.4639 -2.5207 15 6 2.5692 10.2338 -3.6513 16 1 2.9287 9.8431 -4.5918 17 6 2.0414 11.5162 -3.5888 18 7 1.9795 12.2561 -4.6755 19 14 1.4189 12.1918 -1.9623 20 1 -0.0202 11.8598 -1.8067 21 1 2.1900 11.5859 -0.8471 22 1 1.5920 13.6664 -1.9400 23 6 3.6214 7.6285 -1.1857 24 1 4.6992 7.7433 -1.0701 25 6 2.8909 8.4349 -0.1101 26 6 2.6259 3.4048 1.2025 27 6 2.1623 2.1052 1.1952 28 6 1.8023 1.4280 2.4924 29 6 2.9995 0.6182 2.9943 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.2566 1.4956 -2.1253 36 1 3.0762 3.8143 -2.1364 37 1 1.8323 5.0793 -2.1664 38 1 3.3949 5.3327 -3.0026 39 1 1.1317 7.3543 -2.5505 40 1 2.0205 6.9939 -4.0682 41 1 2.3099 9.8147 -1.6761 42 1 1.6110 13.1523 -4.6318 43 1 1.8152 8.2985 -0.2216 44 1 3.2007 8.0893 0.8762 45 1 3.1363 9.4913 -0.2186 46 1 2.7309 3.9367 2.1366 47 1 1.5367 2.1813 3.2340 48 1 0.9548 0.7618 2.3315 49 1 2.7392 0.1287 3.9328 50 1 3.2651 -0.1352 2.2527 51 1 3.8470 1.2844 3.1553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987623264.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:02 Heat of formation + Delta-G solvation = -11.944379 kcal Electronic energy + Delta-G solvation = -28700.542275 eV Core-core repulsion = 24985.285651 eV Total energy + Delta-G solvation = -3715.256624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79530 -40.42779 -38.89376 -36.27008 -35.59263 -34.33483 -33.65700 -32.26755 -31.41276 -30.81746 -29.78049 -27.08431 -25.95633 -25.28711 -24.41261 -23.98570 -22.50167 -21.90715 -21.10138 -20.15949 -19.89575 -18.14684 -17.35648 -17.20552 -16.78946 -16.52892 -16.37560 -15.97407 -15.58385 -15.16484 -14.89673 -14.81731 -14.75373 -14.53372 -14.40894 -14.13515 -14.06331 -13.72314 -13.67240 -13.36792 -13.24099 -13.16002 -13.07896 -12.88187 -12.82424 -12.53840 -12.44898 -12.25027 -12.11959 -12.03885 -11.93304 -11.76206 -11.65895 -11.56855 -11.42028 -10.99989 -10.90666 -9.92311 -9.70383 -9.55516 -9.32533 -8.03053 -5.36513 -0.10811 0.39005 1.35953 1.36769 1.43675 1.68971 1.86205 2.45938 2.76912 3.24692 3.36759 3.51072 3.65638 3.76739 3.79867 3.87948 3.94561 4.06352 4.13578 4.20489 4.27519 4.28719 4.38898 4.47531 4.48391 4.52091 4.55157 4.55388 4.60043 4.67058 4.74731 4.77810 4.87505 4.96014 5.01469 5.05834 5.07494 5.10472 5.12278 5.17372 5.21829 5.26105 5.34546 5.37191 5.41536 5.47980 5.50606 5.67829 5.77384 5.97159 6.20796 6.44558 7.02282 7.06198 7.80755 7.99006 9.17913 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021823 B = 0.002618 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.749683 B =10691.209804 C =11183.940126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.056 4.056 4 C -0.121 4.121 5 C -0.100 4.100 6 C -0.148 4.148 7 C 0.567 3.433 8 O -0.582 6.582 9 N -0.602 5.602 10 C 0.097 3.903 11 C -0.146 4.146 12 C 0.171 3.829 13 H 0.072 0.928 14 N -0.746 5.746 15 C -0.225 4.225 16 H 0.068 0.932 17 C -0.058 4.058 18 N -0.979 5.979 19 Si 0.938 3.062 20 H -0.279 1.279 21 H -0.256 1.256 22 H -0.296 1.296 23 C 0.132 3.868 24 H 0.071 0.929 25 C -0.157 4.157 26 C -0.076 4.076 27 C -0.091 4.091 28 C -0.087 4.087 29 C -0.146 4.146 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.369 0.631 42 H 0.257 0.743 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.115 0.885 47 H 0.068 0.932 48 H 0.093 0.907 49 H 0.072 0.928 50 H 0.063 0.937 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.075 -30.863 10.836 32.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.056 4.056 4 C -0.139 4.139 5 C -0.118 4.118 6 C -0.151 4.151 7 C 0.359 3.641 8 O -0.463 6.463 9 N -0.334 5.334 10 C -0.025 4.025 11 C -0.186 4.186 12 C 0.062 3.938 13 H 0.090 0.910 14 N -0.392 5.392 15 C -0.355 4.355 16 H 0.086 0.914 17 C -0.249 4.249 18 N -0.630 5.630 19 Si 0.766 3.234 20 H -0.205 1.205 21 H -0.181 1.181 22 H -0.222 1.222 23 C 0.028 3.972 24 H 0.089 0.911 25 C -0.215 4.215 26 C -0.095 4.095 27 C -0.091 4.091 28 C -0.124 4.124 29 C -0.203 4.203 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.174 0.826 36 H 0.171 0.829 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.206 0.794 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.133 0.867 47 H 0.087 0.913 48 H 0.111 0.889 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.727 -30.589 11.193 32.618 hybrid contribution -0.224 1.663 0.749 1.838 sum -1.952 -28.926 11.942 31.355 Atomic orbital electron populations 1.21763 0.94022 1.02660 1.02037 1.20727 0.96635 0.90900 1.04360 1.20302 0.95957 0.97214 0.92117 1.21337 0.99376 0.94249 0.98949 1.22010 0.97129 0.95324 0.97379 1.19734 1.06524 0.92878 0.95936 1.18485 0.78654 0.85939 0.81023 1.90720 1.44463 1.76008 1.35147 1.48465 1.60071 1.10357 1.14532 1.22924 0.98461 0.97530 0.83558 1.23389 0.99221 0.94216 1.01815 1.21347 0.95411 0.84070 0.93019 0.91004 1.42986 1.74939 1.13328 1.07936 1.19032 1.32522 0.95107 0.88878 0.91430 1.25347 1.02550 0.97330 0.99712 1.69840 1.53380 1.10789 1.28955 0.85684 0.78880 0.77471 0.81366 1.20480 1.18110 1.22250 1.21615 0.98857 0.80570 0.96173 0.91076 1.21984 1.00455 1.00063 0.98985 1.21089 0.96888 0.94930 0.96641 1.19890 0.99797 0.93001 0.96461 1.20651 0.99614 0.99511 0.92627 1.21760 0.97081 0.99759 1.01725 0.90834 0.92883 0.92757 0.89432 0.89641 0.82626 0.82867 0.88073 0.88199 0.91828 0.89143 0.79448 0.93367 0.92548 0.92175 0.91829 0.86715 0.91342 0.88905 0.90863 0.91783 0.93889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.72 71.98 0.70 -0.52 16 2 C -0.09 -0.79 5.37 29.85 0.16 -0.62 16 3 C -0.06 -0.81 5.14 -19.81 -0.10 -0.91 16 4 C -0.12 -1.75 9.66 22.23 0.21 -1.54 16 5 C -0.10 -1.87 7.94 22.53 0.18 -1.69 16 6 C -0.15 -3.72 5.70 -20.09 -0.11 -3.83 16 7 C 0.57 17.94 7.40 86.79 0.64 18.58 16 8 O -0.58 -22.62 15.70 -3.87 -0.06 -22.68 16 9 N -0.60 -17.61 3.08 -791.44 -2.44 -20.05 16 10 C 0.10 2.18 5.02 86.85 0.44 2.61 16 11 C -0.15 -4.27 6.77 31.98 0.22 -4.05 16 12 C 0.17 6.13 3.46 46.18 0.16 6.29 16 13 H 0.07 2.60 8.12 -2.39 -0.02 2.58 16 14 N -0.75 -33.66 4.82 -317.32 -1.53 -35.19 16 15 C -0.22 -12.28 10.46 84.03 0.88 -11.40 16 16 H 0.07 3.97 8.06 -2.91 -0.02 3.94 16 17 C -0.06 -3.33 5.50 84.86 0.47 -2.87 16 18 N -0.98 -61.66 13.97 21.65 0.30 -61.36 16 19 Si 0.94 45.32 27.74 68.60 1.90 47.22 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.26 -11.39 6.45 99.48 0.64 -10.74 16 22 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 23 C 0.13 4.45 3.46 45.34 0.16 4.61 16 24 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 25 C -0.16 -5.56 7.95 71.98 0.57 -4.98 16 26 C -0.08 -1.82 9.22 22.53 0.21 -1.61 16 27 C -0.09 -1.62 5.13 -19.90 -0.10 -1.72 16 28 C -0.09 -1.14 5.38 29.85 0.16 -0.98 16 29 C -0.15 -1.69 9.72 71.98 0.70 -0.99 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.49 6.79 -2.39 -0.02 0.48 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.09 0.56 8.05 -2.39 -0.02 0.54 16 34 H 0.09 0.64 5.60 -2.39 -0.01 0.63 16 35 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 36 H 0.15 2.35 4.56 -2.91 -0.01 2.33 16 37 H 0.10 1.90 6.15 -2.39 -0.01 1.88 16 38 H 0.10 1.74 7.30 -2.39 -0.02 1.72 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 41 H 0.37 16.44 2.79 -92.71 -0.26 16.18 16 42 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 44 H 0.06 2.18 6.88 -2.38 -0.02 2.16 16 45 H 0.06 2.37 6.60 -2.39 -0.02 2.35 16 46 H 0.11 2.98 7.88 -2.91 -0.02 2.96 16 47 H 0.07 0.95 8.05 -2.39 -0.02 0.93 16 48 H 0.09 0.91 5.59 -2.39 -0.01 0.90 16 49 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.06 0.65 6.79 -2.39 -0.02 0.63 16 51 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -71.67 389.62 4.32 -67.35 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.61 Total: 30.31 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 5.53 Total: -5.62 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -3.67 Total: -116.60 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.06 Total: -22.68 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.90 Total: 47.22 kcal Total: -71.67 4.32 -67.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987623264.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.408 kcal (2) G-P(sol) polarization free energy of solvation -71.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds