Wall clock time and date at job start Tue Mar 31 2020 16:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.46953 * 2 1 4 4 C 1.38389 * 119.85361 * 265.23347 * 3 2 1 5 5 C 1.37929 * 120.14609 * 180.27604 * 4 3 2 6 6 C 1.39601 * 119.85131 * 359.74661 * 5 4 3 7 7 C 1.47845 * 120.14163 * 180.02562 * 6 5 4 8 8 O 1.21561 * 119.99978 * 152.86097 * 7 6 5 9 9 N 1.34778 * 120.00251 * 332.85849 * 7 6 5 10 10 C 1.47423 * 125.64497 * 3.65012 * 9 7 6 11 11 C 1.54910 * 104.83111 * 204.09073 * 10 9 7 12 12 C 1.55153 * 101.58619 * 322.99456 * 11 10 9 13 13 H 1.09003 * 110.72256 * 277.13945 * 12 11 10 14 14 N 1.46495 * 110.72329 * 153.86014 * 12 11 10 15 15 C 1.36940 * 119.99959 * 86.45800 * 14 12 11 16 16 H 1.08002 * 119.99564 * 359.97438 * 15 14 12 17 17 C 1.38807 * 120.00425 * 180.02562 * 15 14 12 18 18 N 1.31625 * 119.99725 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00225 * 179.97438 * 17 15 14 20 20 H 1.48489 * 109.47142 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46813 * 119.99883 * 19 17 15 22 22 H 1.48502 * 109.47128 * 239.99658 * 19 17 15 23 23 C 1.47024 * 125.64779 * 183.34811 * 9 7 6 24 24 H 1.08996 * 109.88184 * 59.55810 * 23 9 7 25 25 C 1.53000 * 109.88206 * 298.39056 * 23 9 7 26 26 C 1.39553 * 119.71360 * 359.97438 * 6 5 4 27 27 C 1.37980 * 119.85203 * 0.02562 * 26 6 5 28 28 C 1.50699 * 119.92688 * 179.97438 * 27 26 6 29 29 C 1.52997 * 109.46956 * 264.99902 * 28 27 26 30 30 H 1.09002 * 109.47207 * 300.00285 * 1 2 3 31 31 H 1.09002 * 109.47168 * 60.00596 * 1 2 3 32 32 H 1.09000 * 109.47099 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46941 * 239.99897 * 2 1 3 34 34 H 1.09000 * 109.46830 * 119.99818 * 2 1 3 35 35 H 1.08001 * 119.92556 * 0.04582 * 4 3 2 36 36 H 1.08003 * 120.07508 * 179.76814 * 5 4 3 37 37 H 1.08995 * 110.37216 * 322.92891 * 10 9 7 38 38 H 1.09001 * 110.36734 * 85.25548 * 10 9 7 39 39 H 1.09008 * 111.00358 * 81.06905 * 11 10 9 40 40 H 1.08999 * 111.00677 * 204.91902 * 11 10 9 41 41 H 0.96998 * 120.00326 * 266.45930 * 14 12 11 42 42 H 0.97002 * 119.99698 * 180.02562 * 18 17 15 43 43 H 1.08995 * 109.46982 * 61.45231 * 25 23 9 44 44 H 1.08994 * 109.47334 * 181.45841 * 25 23 9 45 45 H 1.09004 * 109.47164 * 301.45911 * 25 23 9 46 46 H 1.08004 * 120.07374 * 180.02562 * 26 6 5 47 47 H 1.09003 * 109.46653 * 145.00039 * 28 27 26 48 48 H 1.08998 * 109.46930 * 25.00217 * 28 27 26 49 49 H 1.09004 * 109.47304 * 299.99542 * 29 28 27 50 50 H 1.08993 * 109.47353 * 60.00425 * 29 28 27 51 51 H 1.09008 * 109.46707 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3560 2.0371 -1.1961 5 6 2.8216 3.3353 -1.2026 6 6 2.9611 4.0296 0.0004 7 6 3.4592 5.4216 0.0008 8 8 3.1384 6.1817 0.8937 9 7 4.2688 5.8480 -0.9887 10 6 4.6737 5.0601 -2.1671 11 6 6.0093 5.6948 -2.6287 12 6 5.7496 7.2000 -2.3562 13 1 5.1964 7.6513 -3.1799 14 7 7.0100 7.9102 -2.1259 15 6 7.7214 8.4040 -3.1867 16 1 7.3533 8.2696 -4.1931 17 6 8.9160 9.0765 -2.9686 18 7 9.3648 9.2398 -1.7421 19 14 9.8866 9.7495 -4.4158 20 1 9.1723 9.4365 -5.6794 21 1 10.0247 11.2216 -4.2774 22 1 11.2342 9.1261 -4.4408 23 6 4.8895 7.1781 -1.0748 24 1 5.5214 7.3494 -0.2034 25 6 3.8049 8.2542 -1.1544 26 6 2.6275 3.4043 1.2026 27 6 2.1628 2.1051 1.1952 28 6 1.8025 1.4281 2.4924 29 6 2.9970 0.6120 2.9906 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2472 1.4989 -2.1262 36 1 3.0774 3.8139 -2.1365 37 1 4.8249 4.0164 -1.8920 38 1 3.9234 5.1411 -2.9536 39 1 6.8435 5.3278 -2.0307 40 1 6.1818 5.5140 -3.6896 41 1 7.3408 8.0305 -1.2220 42 1 10.1994 9.7101 -1.5897 43 1 3.1953 8.2232 -0.2513 44 1 4.2719 9.2349 -1.2440 45 1 3.1744 8.0711 -2.0246 46 1 2.7328 3.9361 2.1367 47 1 0.9515 0.7660 2.3325 48 1 1.5421 2.1818 3.2355 49 1 3.2574 -0.1417 2.2475 50 1 3.8480 1.2740 3.1504 51 1 2.7362 0.1219 3.9287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987623268.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:06 Heat of formation + Delta-G solvation = -6.107306 kcal Electronic energy + Delta-G solvation = -28489.833195 eV Core-core repulsion = 24774.829685 eV Total energy + Delta-G solvation = -3715.003510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.62858 -39.34448 -37.35583 -35.04623 -34.07999 -33.69129 -31.71624 -30.95782 -30.16586 -29.57038 -28.69284 -25.41147 -24.98724 -24.11473 -23.05070 -22.70976 -21.78573 -20.90385 -20.13569 -19.01959 -17.27983 -16.87408 -16.38419 -16.10470 -15.91102 -15.07926 -14.69256 -14.61880 -14.16055 -13.97529 -13.90873 -13.75057 -13.64970 -13.46449 -13.38148 -13.01260 -12.83055 -12.67280 -12.60896 -12.24399 -12.13814 -11.96537 -11.68628 -11.59387 -11.48077 -11.38331 -11.19199 -11.07059 -10.96884 -10.88750 -10.73585 -10.57068 -10.24511 -10.01560 -9.77933 -9.58822 -9.01371 -8.95447 -8.75482 -8.39300 -7.04265 -5.82829 -3.13339 0.80645 1.20881 2.86479 3.11816 3.39893 3.45550 3.47917 3.69761 4.38792 4.47048 4.53266 4.55189 4.65399 4.72957 4.92144 4.96151 5.00454 5.09066 5.12049 5.19112 5.24257 5.30315 5.33321 5.36007 5.45006 5.50151 5.54781 5.55712 5.62131 5.65497 5.70336 5.76254 5.79822 5.84481 5.90305 5.94462 6.02843 6.08748 6.12174 6.19460 6.25276 6.29175 6.42092 6.45343 6.57505 6.62058 6.71080 6.79004 6.91672 7.64869 7.74032 8.32668 8.35242 9.46003 10.00477 10.35207 11.39422 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.002413 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.382367 B =11602.325406 C =11842.959427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.061 4.061 4 C -0.124 4.124 5 C -0.101 4.101 6 C -0.124 4.124 7 C 0.569 3.431 8 O -0.540 6.540 9 N -0.602 5.602 10 C 0.091 3.909 11 C -0.157 4.157 12 C 0.177 3.823 13 H 0.065 0.935 14 N -0.715 5.715 15 C -0.242 4.242 16 H 0.073 0.927 17 C -0.011 4.011 18 N -0.929 5.929 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.127 3.873 24 H 0.078 0.922 25 C -0.155 4.155 26 C -0.059 4.059 27 C -0.090 4.090 28 C -0.087 4.087 29 C -0.149 4.149 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.126 0.874 36 H 0.141 0.859 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.131 0.869 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.058 0.942 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.572 -20.195 3.515 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.062 4.062 4 C -0.142 4.142 5 C -0.119 4.119 6 C -0.127 4.127 7 C 0.358 3.642 8 O -0.419 6.419 9 N -0.334 5.334 10 C -0.032 4.032 11 C -0.198 4.198 12 C 0.065 3.935 13 H 0.083 0.917 14 N -0.355 5.355 15 C -0.373 4.373 16 H 0.091 0.909 17 C -0.207 4.207 18 N -0.577 5.577 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.024 3.976 24 H 0.096 0.904 25 C -0.213 4.213 26 C -0.078 4.078 27 C -0.090 4.090 28 C -0.124 4.124 29 C -0.206 4.206 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.144 0.856 36 H 0.158 0.842 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.149 0.851 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.075 0.925 50 H 0.077 0.923 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.691 -19.710 3.887 26.769 hybrid contribution 0.824 0.440 -0.605 1.113 sum -16.868 -19.270 3.282 25.819 Atomic orbital electron populations 1.21765 0.94604 1.01737 1.02407 1.20648 0.96302 0.92673 1.03158 1.19910 0.97604 0.96018 0.92629 1.20968 1.00625 0.95033 0.97596 1.21876 0.97273 0.94559 0.98175 1.19895 1.04009 0.94241 0.94521 1.17957 0.78303 0.86910 0.80981 1.90754 1.58191 1.56331 1.36631 1.48441 1.47116 1.15639 1.22242 1.22737 0.97372 0.95919 0.87183 1.23608 0.95031 0.99501 1.01668 1.21242 0.88146 0.90820 0.93310 0.91741 1.42348 1.20434 1.65387 1.07359 1.19237 1.01528 1.28787 0.87756 0.90940 1.24774 0.98303 1.01213 0.96445 1.69680 1.22610 1.46953 1.18474 0.86108 0.79936 0.78498 0.81552 1.20496 1.21816 1.21835 1.21930 0.94220 0.81042 1.00401 0.90392 1.22053 0.98569 0.98808 1.01845 1.21080 0.95501 0.93678 0.97544 1.19653 1.00530 0.93897 0.94895 1.20594 0.98760 0.99328 0.93743 1.21779 0.98032 0.99998 1.00788 0.92362 0.92443 0.92337 0.90943 0.90467 0.85609 0.84178 0.90492 0.91444 0.90535 0.90482 0.77977 0.93418 0.91807 0.91125 0.93110 0.85099 0.90596 0.90904 0.92459 0.92336 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.72 37.16 0.36 -0.53 16 2 C -0.09 -0.60 5.38 -27.88 -0.15 -0.75 16 3 C -0.06 -0.56 5.14 -104.53 -0.54 -1.10 16 4 C -0.12 -1.18 9.66 -39.64 -0.38 -1.56 16 5 C -0.10 -1.13 7.94 -39.19 -0.31 -1.44 16 6 C -0.12 -1.69 5.70 -104.97 -0.60 -2.29 16 7 C 0.57 9.53 7.46 -12.33 -0.09 9.44 16 8 O -0.54 -10.69 15.58 5.31 0.08 -10.61 16 9 N -0.60 -9.66 3.06 -164.11 -0.50 -10.17 16 10 C 0.09 1.21 5.02 -2.53 -0.01 1.20 16 11 C -0.16 -2.56 6.77 -24.58 -0.17 -2.72 16 12 C 0.18 3.38 3.12 -66.09 -0.21 3.17 16 13 H 0.06 1.23 7.82 -51.93 -0.41 0.82 16 14 N -0.71 -17.33 5.25 -51.65 -0.27 -17.60 16 15 C -0.24 -6.46 9.98 -15.06 -0.15 -6.61 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 19 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 C 0.13 2.30 3.23 -66.94 -0.22 2.09 16 24 H 0.08 1.59 7.69 -51.93 -0.40 1.19 16 25 C -0.15 -2.65 9.10 37.16 0.34 -2.31 16 26 C -0.06 -0.74 9.22 -39.19 -0.36 -1.11 16 27 C -0.09 -0.91 5.13 -104.68 -0.54 -1.44 16 28 C -0.09 -0.68 5.38 -27.89 -0.15 -0.83 16 29 C -0.15 -1.07 9.71 37.16 0.36 -0.71 16 30 H 0.06 0.36 6.78 -51.93 -0.35 0.01 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.42 8.05 -51.93 -0.42 0.01 16 34 H 0.08 0.47 5.57 -51.93 -0.29 0.18 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.14 1.41 4.56 -52.48 -0.24 1.17 16 37 H 0.08 0.92 6.16 -51.93 -0.32 0.60 16 38 H 0.07 0.77 7.29 -51.93 -0.38 0.39 16 39 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.39 10.13 7.51 -40.82 -0.31 9.83 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.06 1.14 6.77 -51.93 -0.35 0.79 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.13 1.68 7.88 -52.48 -0.41 1.27 16 47 H 0.08 0.50 5.61 -51.93 -0.29 0.21 16 48 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 49 H 0.06 0.39 6.76 -51.93 -0.35 0.04 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 LS Contribution 396.81 15.07 5.98 5.98 Total: -1.00 -31.33 396.81 -10.20 -41.54 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -8.29 Total: 8.82 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.91 Total: -7.92 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.05 Total: -54.69 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.33 -10.20 -41.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987623268.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.429 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds