Wall clock time and date at job start Tue Mar 31 2020 16:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.46953 * 2 1 4 4 C 1.38389 * 119.85361 * 265.23347 * 3 2 1 5 5 C 1.37929 * 120.14609 * 180.27604 * 4 3 2 6 6 C 1.39601 * 119.85131 * 359.74661 * 5 4 3 7 7 C 1.47845 * 120.14163 * 180.02562 * 6 5 4 8 8 O 1.21561 * 119.99978 * 152.86097 * 7 6 5 9 9 N 1.34778 * 120.00251 * 332.85849 * 7 6 5 10 10 C 1.47423 * 125.64497 * 3.65012 * 9 7 6 11 11 C 1.54910 * 104.83111 * 204.09073 * 10 9 7 12 12 C 1.55153 * 101.58619 * 322.99456 * 11 10 9 13 13 H 1.09003 * 110.72256 * 277.13945 * 12 11 10 14 14 N 1.46495 * 110.72329 * 153.86014 * 12 11 10 15 15 C 1.36940 * 119.99959 * 86.45800 * 14 12 11 16 16 H 1.08002 * 119.99564 * 359.97438 * 15 14 12 17 17 C 1.38807 * 120.00425 * 180.02562 * 15 14 12 18 18 N 1.31625 * 119.99725 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00225 * 179.97438 * 17 15 14 20 20 H 1.48489 * 109.47142 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46813 * 119.99883 * 19 17 15 22 22 H 1.48502 * 109.47128 * 239.99658 * 19 17 15 23 23 C 1.47024 * 125.64779 * 183.34811 * 9 7 6 24 24 H 1.08996 * 109.88184 * 59.55810 * 23 9 7 25 25 C 1.53000 * 109.88206 * 298.39056 * 23 9 7 26 26 C 1.39553 * 119.71360 * 359.97438 * 6 5 4 27 27 C 1.37980 * 119.85203 * 0.02562 * 26 6 5 28 28 C 1.50699 * 119.92688 * 179.97438 * 27 26 6 29 29 C 1.52997 * 109.46956 * 264.99902 * 28 27 26 30 30 H 1.09002 * 109.47207 * 300.00285 * 1 2 3 31 31 H 1.09002 * 109.47168 * 60.00596 * 1 2 3 32 32 H 1.09000 * 109.47099 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46941 * 239.99897 * 2 1 3 34 34 H 1.09000 * 109.46830 * 119.99818 * 2 1 3 35 35 H 1.08001 * 119.92556 * 0.04582 * 4 3 2 36 36 H 1.08003 * 120.07508 * 179.76814 * 5 4 3 37 37 H 1.08995 * 110.37216 * 322.92891 * 10 9 7 38 38 H 1.09001 * 110.36734 * 85.25548 * 10 9 7 39 39 H 1.09008 * 111.00358 * 81.06905 * 11 10 9 40 40 H 1.08999 * 111.00677 * 204.91902 * 11 10 9 41 41 H 0.96998 * 120.00326 * 266.45930 * 14 12 11 42 42 H 0.97002 * 119.99698 * 180.02562 * 18 17 15 43 43 H 1.08995 * 109.46982 * 61.45231 * 25 23 9 44 44 H 1.08994 * 109.47334 * 181.45841 * 25 23 9 45 45 H 1.09004 * 109.47164 * 301.45911 * 25 23 9 46 46 H 1.08004 * 120.07374 * 180.02562 * 26 6 5 47 47 H 1.09003 * 109.46653 * 145.00039 * 28 27 26 48 48 H 1.08998 * 109.46930 * 25.00217 * 28 27 26 49 49 H 1.09004 * 109.47304 * 299.99542 * 29 28 27 50 50 H 1.08993 * 109.47353 * 60.00425 * 29 28 27 51 51 H 1.09008 * 109.46707 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3560 2.0371 -1.1961 5 6 2.8216 3.3353 -1.2026 6 6 2.9611 4.0296 0.0004 7 6 3.4592 5.4216 0.0008 8 8 3.1384 6.1817 0.8937 9 7 4.2688 5.8480 -0.9887 10 6 4.6737 5.0601 -2.1671 11 6 6.0093 5.6948 -2.6287 12 6 5.7496 7.2000 -2.3562 13 1 5.1964 7.6513 -3.1799 14 7 7.0100 7.9102 -2.1259 15 6 7.7214 8.4040 -3.1867 16 1 7.3533 8.2696 -4.1931 17 6 8.9160 9.0765 -2.9686 18 7 9.3648 9.2398 -1.7421 19 14 9.8866 9.7495 -4.4158 20 1 9.1723 9.4365 -5.6794 21 1 10.0247 11.2216 -4.2774 22 1 11.2342 9.1261 -4.4408 23 6 4.8895 7.1781 -1.0748 24 1 5.5214 7.3494 -0.2034 25 6 3.8049 8.2542 -1.1544 26 6 2.6275 3.4043 1.2026 27 6 2.1628 2.1051 1.1952 28 6 1.8025 1.4281 2.4924 29 6 2.9970 0.6120 2.9906 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2472 1.4989 -2.1262 36 1 3.0774 3.8139 -2.1365 37 1 4.8249 4.0164 -1.8920 38 1 3.9234 5.1411 -2.9536 39 1 6.8435 5.3278 -2.0307 40 1 6.1818 5.5140 -3.6896 41 1 7.3408 8.0305 -1.2220 42 1 10.1994 9.7101 -1.5897 43 1 3.1953 8.2232 -0.2513 44 1 4.2719 9.2349 -1.2440 45 1 3.1744 8.0711 -2.0246 46 1 2.7328 3.9361 2.1367 47 1 0.9515 0.7660 2.3325 48 1 1.5421 2.1818 3.2355 49 1 3.2574 -0.1417 2.2475 50 1 3.8480 1.2740 3.1504 51 1 2.7362 0.1219 3.9287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987623268.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:05 Heat of formation + Delta-G solvation = -23.013694 kcal Electronic energy + Delta-G solvation = -28490.566311 eV Core-core repulsion = 24774.829685 eV Total energy + Delta-G solvation = -3715.736626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74552 -40.36244 -38.76163 -36.12961 -35.59914 -34.33218 -33.38112 -32.36934 -31.15553 -30.75218 -29.76359 -26.97642 -25.83569 -25.26861 -24.48411 -23.79023 -22.49674 -21.91477 -21.51873 -20.27306 -19.16636 -18.03935 -17.56573 -17.15211 -16.73819 -16.53781 -16.11246 -15.71326 -15.45151 -15.16972 -14.85201 -14.78603 -14.64379 -14.62912 -14.39877 -14.18583 -14.04155 -13.65894 -13.49521 -13.34864 -13.27465 -13.08800 -12.95227 -12.82712 -12.62486 -12.59067 -12.35862 -12.17275 -12.11846 -12.06676 -12.02562 -11.75592 -11.65304 -11.54018 -11.40340 -10.99220 -10.85080 -9.91850 -9.69134 -9.54202 -9.03507 -7.94329 -5.24687 -0.10575 0.39083 1.49269 1.50090 1.60008 1.70766 1.87195 2.57060 2.77204 3.32941 3.42585 3.64549 3.73760 3.78390 3.85838 3.94030 3.99328 4.13570 4.14720 4.21483 4.29769 4.35764 4.42010 4.47658 4.50929 4.54761 4.55998 4.59515 4.63823 4.64606 4.77896 4.86396 4.89604 5.00293 5.01588 5.06157 5.10391 5.12652 5.16972 5.20275 5.22750 5.29873 5.34525 5.37799 5.42993 5.48684 5.50869 5.54932 5.67877 5.97545 6.25765 6.47232 7.04064 7.32086 8.03452 8.27608 9.29537 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.002413 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.382367 B =11602.325406 C =11842.959427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.056 4.056 4 C -0.120 4.120 5 C -0.100 4.100 6 C -0.148 4.148 7 C 0.564 3.436 8 O -0.585 6.585 9 N -0.602 5.602 10 C 0.098 3.902 11 C -0.148 4.148 12 C 0.172 3.828 13 H 0.074 0.926 14 N -0.730 5.730 15 C -0.233 4.233 16 H 0.085 0.915 17 C -0.078 4.078 18 N -0.973 5.973 19 Si 0.974 3.026 20 H -0.260 1.260 21 H -0.298 1.298 22 H -0.296 1.296 23 C 0.132 3.868 24 H 0.044 0.956 25 C -0.144 4.144 26 C -0.078 4.078 27 C -0.091 4.091 28 C -0.087 4.087 29 C -0.146 4.146 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.095 0.905 41 H 0.370 0.630 42 H 0.250 0.750 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.113 0.887 47 H 0.094 0.906 48 H 0.067 0.933 49 H 0.064 0.936 50 H 0.041 0.959 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.386 -23.467 1.035 30.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.056 4.056 4 C -0.138 4.138 5 C -0.118 4.118 6 C -0.151 4.151 7 C 0.356 3.644 8 O -0.466 6.466 9 N -0.334 5.334 10 C -0.024 4.024 11 C -0.189 4.189 12 C 0.062 3.938 13 H 0.092 0.908 14 N -0.369 5.369 15 C -0.364 4.364 16 H 0.103 0.897 17 C -0.270 4.270 18 N -0.623 5.623 19 Si 0.803 3.197 20 H -0.184 1.184 21 H -0.226 1.226 22 H -0.223 1.223 23 C 0.028 3.972 24 H 0.062 0.938 25 C -0.202 4.202 26 C -0.097 4.097 27 C -0.091 4.091 28 C -0.124 4.124 29 C -0.204 4.204 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.176 0.824 36 H 0.172 0.828 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.202 0.798 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.131 0.869 47 H 0.112 0.888 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.060 0.940 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.552 -23.033 1.358 30.243 hybrid contribution 1.276 1.352 0.217 1.872 sum -18.276 -21.681 1.575 28.400 Atomic orbital electron populations 1.21764 0.93960 1.02686 1.02031 1.20732 0.96693 0.90812 1.04406 1.20312 0.95963 0.97247 0.92059 1.21346 0.99181 0.94299 0.98984 1.22008 0.97148 0.95207 0.97426 1.19740 1.06441 0.92763 0.96146 1.18556 0.77733 0.87993 0.80146 1.90718 1.59931 1.57770 1.38211 1.48469 1.46765 1.15002 1.23166 1.22927 0.96372 0.96270 0.86805 1.23430 0.96069 0.96888 1.02487 1.21428 0.86318 0.92224 0.93785 0.90848 1.42532 1.22026 1.66187 1.06143 1.19657 1.01149 1.26929 0.88711 0.89666 1.25605 0.99915 1.02716 0.98787 1.69852 1.23006 1.48791 1.20688 0.85057 0.78230 0.77039 0.79326 1.18397 1.22552 1.22347 1.21667 0.94110 0.82830 0.98596 0.93824 1.21941 0.98193 0.98012 1.02094 1.21091 0.96919 0.94970 0.96731 1.19887 0.99742 0.92929 0.96550 1.20649 0.99641 0.99460 0.92610 1.21765 0.97075 0.99729 1.01795 0.92901 0.92725 0.90763 0.89346 0.89667 0.82440 0.82815 0.88319 0.87987 0.92744 0.88655 0.79805 0.94156 0.93046 0.92096 0.91090 0.86928 0.88766 0.91415 0.91715 0.94020 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.72 71.98 0.70 -0.54 16 2 C -0.09 -0.84 5.38 29.85 0.16 -0.67 16 3 C -0.06 -0.85 5.14 -19.81 -0.10 -0.95 16 4 C -0.12 -1.83 9.66 22.23 0.21 -1.62 16 5 C -0.10 -1.97 7.94 22.53 0.18 -1.80 16 6 C -0.15 -4.00 5.70 -20.09 -0.11 -4.12 16 7 C 0.56 19.34 7.46 86.79 0.65 19.99 16 8 O -0.58 -24.51 15.58 -3.91 -0.06 -24.57 16 9 N -0.60 -19.24 3.06 -791.39 -2.42 -21.66 16 10 C 0.10 2.37 5.02 86.86 0.44 2.80 16 11 C -0.15 -4.60 6.77 31.99 0.22 -4.38 16 12 C 0.17 6.53 3.12 46.19 0.14 6.67 16 13 H 0.07 2.68 7.82 -2.39 -0.02 2.66 16 14 N -0.73 -36.10 5.25 -317.31 -1.67 -37.77 16 15 C -0.23 -12.42 9.98 84.03 0.84 -11.58 16 16 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 17 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 18 N -0.97 -59.73 13.06 21.65 0.28 -59.45 16 19 Si 0.97 45.35 29.55 68.60 2.03 47.37 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 21 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 23 C 0.13 4.92 3.23 45.35 0.15 5.06 16 24 H 0.04 1.91 7.69 -2.39 -0.02 1.89 16 25 C -0.14 -5.06 9.10 71.98 0.66 -4.40 16 26 C -0.08 -2.00 9.22 22.53 0.21 -1.79 16 27 C -0.09 -1.73 5.13 -19.90 -0.10 -1.83 16 28 C -0.09 -1.23 5.38 29.85 0.16 -1.07 16 29 C -0.15 -1.88 9.71 71.98 0.70 -1.18 16 30 H 0.05 0.50 6.78 -2.39 -0.02 0.49 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.09 0.60 8.05 -2.39 -0.02 0.58 16 34 H 0.08 0.70 5.57 -2.39 -0.01 0.69 16 35 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.15 2.50 4.56 -2.91 -0.01 2.49 16 37 H 0.10 2.04 6.16 -2.39 -0.01 2.02 16 38 H 0.10 1.86 7.29 -2.39 -0.02 1.84 16 39 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.37 20.41 7.51 -92.71 -0.70 19.72 16 42 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.05 1.92 6.77 -2.39 -0.02 1.90 16 44 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 46 H 0.11 3.18 7.88 -2.91 -0.02 3.15 16 47 H 0.09 1.00 5.61 -2.39 -0.01 0.99 16 48 H 0.07 1.03 8.05 -2.39 -0.02 1.01 16 49 H 0.06 0.73 6.76 -2.39 -0.02 0.71 16 50 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -71.30 396.81 3.94 -67.36 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: 0.23 Total: 34.08 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 5.55 Total: -5.37 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -3.81 Total: -118.88 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.06 Total: -24.57 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -71.30 3.94 -67.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987623268.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.346 kcal (2) G-P(sol) polarization free energy of solvation -71.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds