Wall clock time and date at job start Tue Mar 31 2020 16:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47015 * 2 1 4 4 C 1.38379 * 119.85556 * 265.00282 * 3 2 1 5 5 C 1.37938 * 120.14956 * 180.27512 * 4 3 2 6 6 C 1.39595 * 119.84795 * 359.47178 * 5 4 3 7 7 C 1.47849 * 120.14115 * 180.24953 * 6 5 4 8 8 O 1.21555 * 119.99470 * 185.95144 * 7 6 5 9 9 N 1.34768 * 119.99958 * 5.94437 * 7 6 5 10 10 C 1.47427 * 125.64446 * 183.61736 * 9 7 6 11 11 C 1.54912 * 104.82867 * 204.09459 * 10 9 7 12 12 C 1.55152 * 101.58562 * 322.99067 * 11 10 9 13 13 H 1.09002 * 110.72190 * 277.14190 * 12 11 10 14 14 N 1.46497 * 110.72338 * 154.04231 * 12 11 10 15 15 C 1.36937 * 119.99996 * 86.45475 * 14 12 11 16 16 H 1.08003 * 119.99819 * 0.02562 * 15 14 12 17 17 C 1.38814 * 120.00171 * 179.97438 * 15 14 12 18 18 N 1.31617 * 119.99840 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00133 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47235 * 90.00100 * 19 17 15 21 21 H 1.48500 * 109.47140 * 210.00121 * 19 17 15 22 22 H 1.48507 * 109.46845 * 329.99974 * 19 17 15 23 23 C 1.47020 * 125.64957 * 3.31110 * 9 7 6 24 24 H 1.08992 * 109.88701 * 298.39107 * 23 9 7 25 25 C 1.52998 * 109.88068 * 59.55856 * 23 9 7 26 26 C 1.39555 * 119.71154 * 0.54912 * 6 5 4 27 27 C 1.37978 * 119.85632 * 359.70022 * 26 6 5 28 28 C 1.50696 * 119.92999 * 180.02562 * 27 26 6 29 29 C 1.52999 * 109.47377 * 265.02352 * 28 27 26 30 30 H 1.09003 * 109.47035 * 299.99706 * 1 2 3 31 31 H 1.08997 * 109.47497 * 59.99740 * 1 2 3 32 32 H 1.08998 * 109.47008 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47226 * 240.00096 * 2 1 3 34 34 H 1.09000 * 109.46952 * 119.99745 * 2 1 3 35 35 H 1.08003 * 119.92666 * 359.97438 * 4 3 2 36 36 H 1.07996 * 120.07112 * 179.70526 * 5 4 3 37 37 H 1.09001 * 110.37031 * 322.93025 * 10 9 7 38 38 H 1.08997 * 110.36760 * 85.26199 * 10 9 7 39 39 H 1.09005 * 111.00681 * 81.06778 * 11 10 9 40 40 H 1.09003 * 111.00550 * 204.91217 * 11 10 9 41 41 H 0.97003 * 119.99857 * 266.45388 * 14 12 11 42 42 H 0.96998 * 119.99887 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47544 * 74.29032 * 25 23 9 44 44 H 1.09004 * 109.47078 * 194.28253 * 25 23 9 45 45 H 1.08994 * 109.47281 * 314.28410 * 25 23 9 46 46 H 1.08006 * 120.07390 * 179.72783 * 26 6 5 47 47 H 1.08998 * 109.46943 * 25.02353 * 28 27 26 48 48 H 1.09004 * 109.47107 * 145.02319 * 28 27 26 49 49 H 1.09010 * 109.47211 * 300.00281 * 29 28 27 50 50 H 1.09004 * 109.47028 * 59.99919 * 29 28 27 51 51 H 1.09000 * 109.47306 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3605 2.0355 -1.1956 5 6 2.8262 3.3338 -1.2021 6 6 2.9557 4.0316 0.0000 7 6 3.4490 5.4253 0.0000 8 8 3.6637 5.9940 1.0526 9 7 3.6607 6.0652 -1.1671 10 6 4.2192 7.4216 -1.3142 11 6 3.6985 7.9181 -2.6862 12 6 3.7512 6.6165 -3.5290 13 1 4.7556 6.4492 -3.9179 14 7 2.7761 6.6663 -4.6212 15 6 3.1142 7.2459 -5.8149 16 1 4.0998 7.6659 -5.9513 17 6 2.1905 7.2927 -6.8500 18 7 0.9895 6.7804 -6.6839 19 14 2.6519 8.0826 -8.4786 20 1 3.2365 7.0563 -9.3786 21 1 1.4384 8.6610 -9.1096 22 1 3.6476 9.1588 -8.2422 23 6 3.3790 5.5237 -2.5046 24 1 3.9799 4.6309 -2.6772 25 6 1.8919 5.1850 -2.6262 26 6 2.6234 3.4057 1.2023 27 6 2.1637 2.1048 1.1953 28 6 1.8039 1.4276 2.4925 29 6 3.0007 0.6169 2.9938 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2563 1.4957 -2.1253 36 1 3.0865 3.8107 -2.1355 37 1 3.8587 8.0691 -0.5148 38 1 5.3085 7.3857 -1.3124 39 1 2.6771 8.2900 -2.6052 40 1 4.3581 8.6798 -3.1020 41 1 1.8910 6.2887 -4.4988 42 1 0.3439 6.8134 -7.4071 43 1 1.3166 6.1054 -2.7258 44 1 1.7323 4.5600 -3.5048 45 1 1.5674 4.6484 -1.7347 46 1 2.7256 3.9386 2.1361 47 1 1.5390 2.1809 3.2344 48 1 0.9558 0.7618 2.3319 49 1 3.2657 -0.1365 2.2519 50 1 3.8488 1.2826 3.1545 51 1 2.7403 0.1267 3.9319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987623273.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:08 Heat of formation + Delta-G solvation = 30.069538 kcal Electronic energy + Delta-G solvation = -29144.792539 eV Core-core repulsion = 25431.357775 eV Total energy + Delta-G solvation = -3713.434764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.91148 -39.23771 -37.60324 -35.11734 -34.12664 -33.57293 -31.70612 -31.55552 -30.05777 -28.89617 -28.69755 -25.54868 -24.78371 -23.99362 -23.62453 -22.47156 -21.64244 -20.84806 -19.80759 -19.15080 -17.60056 -16.86596 -16.25257 -15.96235 -15.54684 -15.42353 -14.75248 -14.61329 -14.18634 -14.01182 -13.87465 -13.77287 -13.61615 -13.54324 -13.19386 -13.01974 -12.70537 -12.58076 -12.45128 -12.15773 -11.95148 -11.75318 -11.69478 -11.51190 -11.38132 -11.28370 -11.18472 -11.00720 -10.85708 -10.83097 -10.70310 -10.38460 -10.28514 -10.05396 -9.78116 -9.63288 -9.00261 -8.85973 -8.53225 -8.36713 -7.08703 -5.87426 -3.17442 0.88462 1.37270 2.93996 3.13987 3.37724 3.43775 3.44981 3.86207 4.45159 4.51982 4.56541 4.68391 4.76643 4.83567 4.91484 5.07070 5.07540 5.11927 5.20995 5.26926 5.29517 5.36564 5.43146 5.44272 5.45241 5.51692 5.58843 5.61243 5.66480 5.69876 5.76355 5.83846 5.87682 5.94703 5.97594 6.03775 6.09113 6.10947 6.12894 6.24618 6.27631 6.35999 6.43060 6.51896 6.56805 6.60765 6.64700 6.88733 6.92164 7.61643 7.72241 8.30564 8.33214 9.42944 9.96221 10.31439 11.34898 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015729 B = 0.003081 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.682271 B = 9085.702174 C =10525.917786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.054 4.054 4 C -0.133 4.133 5 C -0.110 4.110 6 C -0.139 4.139 7 C 0.574 3.426 8 O -0.551 6.551 9 N -0.602 5.602 10 C 0.105 3.895 11 C -0.154 4.154 12 C 0.175 3.825 13 H 0.065 0.935 14 N -0.717 5.717 15 C -0.245 4.245 16 H 0.072 0.928 17 C -0.009 4.009 18 N -0.931 5.931 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.109 3.891 24 H 0.086 0.914 25 C -0.179 4.179 26 C -0.055 4.055 27 C -0.101 4.101 28 C -0.085 4.085 29 C -0.148 4.148 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.127 0.873 36 H 0.172 0.828 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.390 0.610 42 H 0.257 0.743 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.131 0.869 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 -13.043 15.377 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.054 4.054 4 C -0.151 4.151 5 C -0.128 4.128 6 C -0.142 4.142 7 C 0.364 3.636 8 O -0.431 6.431 9 N -0.335 5.335 10 C -0.017 4.017 11 C -0.195 4.195 12 C 0.063 3.937 13 H 0.083 0.917 14 N -0.361 5.361 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.739 3.261 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.005 3.995 24 H 0.103 0.897 25 C -0.236 4.236 26 C -0.074 4.074 27 C -0.101 4.101 28 C -0.122 4.122 29 C -0.205 4.205 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.145 0.855 36 H 0.189 0.811 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.228 0.772 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.148 0.852 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.233 -12.692 15.820 20.405 hybrid contribution -0.115 0.445 -1.006 1.106 sum 2.118 -12.248 14.814 19.338 Atomic orbital electron populations 1.21763 0.94543 1.01717 1.02525 1.20656 0.96382 0.92742 1.03031 1.19954 0.96877 0.95907 0.92707 1.21030 1.01353 0.95076 0.97614 1.23109 0.95203 0.94437 1.00005 1.19814 1.05750 0.94213 0.94438 1.17943 0.77526 0.85739 0.82379 1.90727 1.53607 1.68159 1.30572 1.48440 1.62345 1.17271 1.05429 1.22285 0.97714 0.82717 0.98990 1.23563 1.02026 1.00454 0.93440 1.21195 0.94637 0.90392 0.87489 0.91676 1.42604 1.13281 1.70221 1.09948 1.19225 0.98109 1.30541 0.89693 0.91018 1.24745 0.96019 1.01355 0.98454 1.69649 1.05035 1.50398 1.32767 0.86182 0.77140 0.78884 0.83898 1.21647 1.21761 1.20702 1.22287 0.96936 0.97670 0.82561 0.89683 1.22663 0.95052 1.03305 1.02592 1.21071 0.95180 0.93612 0.97492 1.19595 1.01676 0.94017 0.94793 1.20562 0.98649 0.99254 0.93780 1.21775 0.98063 0.99998 1.00676 0.92431 0.92224 0.92382 0.90918 0.90613 0.85499 0.81126 0.90923 0.91717 0.90648 0.90421 0.77209 0.93356 0.91012 0.90088 0.91328 0.85158 0.91083 0.90657 0.92494 0.92456 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.72 37.16 0.36 -0.79 16 2 C -0.09 -0.75 5.38 -27.88 -0.15 -0.90 16 3 C -0.05 -0.58 5.14 -104.53 -0.54 -1.12 16 4 C -0.13 -1.56 9.66 -39.64 -0.38 -1.94 16 5 C -0.11 -1.47 6.39 -39.19 -0.25 -1.72 16 6 C -0.14 -2.06 5.25 -104.97 -0.55 -2.62 16 7 C 0.57 9.79 7.58 -12.33 -0.09 9.70 16 8 O -0.55 -10.79 16.60 5.32 0.09 -10.70 16 9 N -0.60 -9.70 3.08 -166.11 -0.51 -10.22 16 10 C 0.11 1.63 6.92 -2.53 -0.02 1.61 16 11 C -0.15 -2.58 6.77 -24.58 -0.17 -2.75 16 12 C 0.17 3.18 3.40 -66.09 -0.22 2.95 16 13 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 14 N -0.72 -16.39 5.03 -51.64 -0.26 -16.65 16 15 C -0.24 -6.33 9.98 -15.06 -0.15 -6.48 16 16 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -26.65 13.06 55.49 0.72 -25.92 16 19 Si 0.91 21.45 29.55 -169.99 -5.02 16.42 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.11 1.72 2.71 -66.95 -0.18 1.54 16 24 H 0.09 1.23 6.15 -51.93 -0.32 0.91 16 25 C -0.18 -2.87 6.40 37.16 0.24 -2.63 16 26 C -0.05 -0.74 9.22 -39.19 -0.36 -1.10 16 27 C -0.10 -1.13 5.13 -104.68 -0.54 -1.67 16 28 C -0.09 -0.74 5.38 -27.89 -0.15 -0.89 16 29 C -0.15 -1.14 9.72 37.16 0.36 -0.78 16 30 H 0.06 0.45 6.79 -51.93 -0.35 0.10 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.55 8.05 -51.93 -0.42 0.13 16 34 H 0.08 0.55 5.59 -51.93 -0.29 0.26 16 35 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 36 H 0.17 2.30 2.16 -55.20 -0.12 2.18 16 37 H 0.07 1.14 8.00 -51.93 -0.42 0.72 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.39 9.35 5.01 -40.82 -0.20 9.14 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.07 1.30 7.20 -51.93 -0.37 0.93 16 44 H 0.08 1.32 7.72 -51.93 -0.40 0.92 16 45 H 0.07 1.04 4.50 -51.93 -0.23 0.80 16 46 H 0.13 1.76 7.66 -52.48 -0.40 1.36 16 47 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 48 H 0.07 0.58 5.60 -51.93 -0.29 0.28 16 49 H 0.06 0.43 6.79 -51.92 -0.35 0.08 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 387.46 15.07 5.84 5.84 Total: -1.00 -30.15 387.46 -9.97 -40.12 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -7.94 Total: 11.05 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -2.89 Total: -9.94 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.05 Total: -52.79 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.15 -9.97 -40.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987623273.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.191 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds