Wall clock time and date at job start Tue Mar 31 2020 16:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47015 * 2 1 4 4 C 1.38379 * 119.85556 * 265.00282 * 3 2 1 5 5 C 1.37938 * 120.14956 * 180.27512 * 4 3 2 6 6 C 1.39595 * 119.84795 * 359.47178 * 5 4 3 7 7 C 1.47849 * 120.14115 * 180.24953 * 6 5 4 8 8 O 1.21555 * 119.99470 * 185.95144 * 7 6 5 9 9 N 1.34768 * 119.99958 * 5.94437 * 7 6 5 10 10 C 1.47427 * 125.64446 * 183.61736 * 9 7 6 11 11 C 1.54912 * 104.82867 * 204.09459 * 10 9 7 12 12 C 1.55152 * 101.58562 * 322.99067 * 11 10 9 13 13 H 1.09002 * 110.72190 * 277.14190 * 12 11 10 14 14 N 1.46497 * 110.72338 * 154.04231 * 12 11 10 15 15 C 1.36937 * 119.99996 * 86.45475 * 14 12 11 16 16 H 1.08003 * 119.99819 * 0.02562 * 15 14 12 17 17 C 1.38814 * 120.00171 * 179.97438 * 15 14 12 18 18 N 1.31617 * 119.99840 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00133 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47235 * 90.00100 * 19 17 15 21 21 H 1.48500 * 109.47140 * 210.00121 * 19 17 15 22 22 H 1.48507 * 109.46845 * 329.99974 * 19 17 15 23 23 C 1.47020 * 125.64957 * 3.31110 * 9 7 6 24 24 H 1.08992 * 109.88701 * 298.39107 * 23 9 7 25 25 C 1.52998 * 109.88068 * 59.55856 * 23 9 7 26 26 C 1.39555 * 119.71154 * 0.54912 * 6 5 4 27 27 C 1.37978 * 119.85632 * 359.70022 * 26 6 5 28 28 C 1.50696 * 119.92999 * 180.02562 * 27 26 6 29 29 C 1.52999 * 109.47377 * 265.02352 * 28 27 26 30 30 H 1.09003 * 109.47035 * 299.99706 * 1 2 3 31 31 H 1.08997 * 109.47497 * 59.99740 * 1 2 3 32 32 H 1.08998 * 109.47008 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47226 * 240.00096 * 2 1 3 34 34 H 1.09000 * 109.46952 * 119.99745 * 2 1 3 35 35 H 1.08003 * 119.92666 * 359.97438 * 4 3 2 36 36 H 1.07996 * 120.07112 * 179.70526 * 5 4 3 37 37 H 1.09001 * 110.37031 * 322.93025 * 10 9 7 38 38 H 1.08997 * 110.36760 * 85.26199 * 10 9 7 39 39 H 1.09005 * 111.00681 * 81.06778 * 11 10 9 40 40 H 1.09003 * 111.00550 * 204.91217 * 11 10 9 41 41 H 0.97003 * 119.99857 * 266.45388 * 14 12 11 42 42 H 0.96998 * 119.99887 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47544 * 74.29032 * 25 23 9 44 44 H 1.09004 * 109.47078 * 194.28253 * 25 23 9 45 45 H 1.08994 * 109.47281 * 314.28410 * 25 23 9 46 46 H 1.08006 * 120.07390 * 179.72783 * 26 6 5 47 47 H 1.08998 * 109.46943 * 25.02353 * 28 27 26 48 48 H 1.09004 * 109.47107 * 145.02319 * 28 27 26 49 49 H 1.09010 * 109.47211 * 300.00281 * 29 28 27 50 50 H 1.09004 * 109.47028 * 59.99919 * 29 28 27 51 51 H 1.09000 * 109.47306 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3605 2.0355 -1.1956 5 6 2.8262 3.3338 -1.2021 6 6 2.9557 4.0316 0.0000 7 6 3.4490 5.4253 0.0000 8 8 3.6637 5.9940 1.0526 9 7 3.6607 6.0652 -1.1671 10 6 4.2192 7.4216 -1.3142 11 6 3.6985 7.9181 -2.6862 12 6 3.7512 6.6165 -3.5290 13 1 4.7556 6.4492 -3.9179 14 7 2.7761 6.6663 -4.6212 15 6 3.1142 7.2459 -5.8149 16 1 4.0998 7.6659 -5.9513 17 6 2.1905 7.2927 -6.8500 18 7 0.9895 6.7804 -6.6839 19 14 2.6519 8.0826 -8.4786 20 1 3.2365 7.0563 -9.3786 21 1 1.4384 8.6610 -9.1096 22 1 3.6476 9.1588 -8.2422 23 6 3.3790 5.5237 -2.5046 24 1 3.9799 4.6309 -2.6772 25 6 1.8919 5.1850 -2.6262 26 6 2.6234 3.4057 1.2023 27 6 2.1637 2.1048 1.1953 28 6 1.8039 1.4276 2.4925 29 6 3.0007 0.6169 2.9938 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2563 1.4957 -2.1253 36 1 3.0865 3.8107 -2.1355 37 1 3.8587 8.0691 -0.5148 38 1 5.3085 7.3857 -1.3124 39 1 2.6771 8.2900 -2.6052 40 1 4.3581 8.6798 -3.1020 41 1 1.8910 6.2887 -4.4988 42 1 0.3439 6.8134 -7.4071 43 1 1.3166 6.1054 -2.7258 44 1 1.7323 4.5600 -3.5048 45 1 1.5674 4.6484 -1.7347 46 1 2.7256 3.9386 2.1361 47 1 1.5390 2.1809 3.2344 48 1 0.9558 0.7618 2.3319 49 1 3.2657 -0.1365 2.2519 50 1 3.8488 1.2826 3.1545 51 1 2.7403 0.1267 3.9319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987623273.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:07 Heat of formation + Delta-G solvation = 14.964701 kcal Electronic energy + Delta-G solvation = -29145.447534 eV Core-core repulsion = 25431.357775 eV Total energy + Delta-G solvation = -3714.089759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.11963 -40.29250 -39.01369 -36.18321 -35.74982 -34.32972 -33.31489 -32.87598 -31.08515 -30.39556 -29.66662 -26.99949 -25.78280 -25.40548 -24.88668 -23.57627 -22.48325 -21.90622 -21.22066 -20.38761 -19.41885 -18.03696 -17.44679 -17.02259 -16.93796 -16.49756 -16.35263 -15.92488 -15.46116 -15.25151 -14.90894 -14.81671 -14.67154 -14.56628 -14.26004 -14.11805 -13.97080 -13.74403 -13.40167 -13.32588 -13.17831 -12.99106 -12.94091 -12.82691 -12.68017 -12.53956 -12.26996 -12.11486 -12.07483 -12.02766 -11.97667 -11.62970 -11.61343 -11.58434 -11.33700 -10.96878 -10.89045 -9.93469 -9.69826 -9.42306 -8.99592 -7.92132 -5.20532 -0.15913 0.40473 1.51627 1.51967 1.59956 1.75023 1.86055 2.58494 2.80916 3.30557 3.38713 3.54602 3.72624 3.84253 3.85402 3.88942 3.94003 4.07955 4.14580 4.18111 4.28920 4.33595 4.40919 4.48732 4.53682 4.55418 4.57031 4.60328 4.67949 4.73580 4.79049 4.79690 4.89864 4.93433 5.03205 5.06899 5.10124 5.11680 5.13189 5.17871 5.24832 5.28188 5.35435 5.37860 5.43789 5.50411 5.50953 5.57338 5.68109 5.97936 6.29000 6.40759 7.01086 7.38135 8.09677 8.34590 9.31027 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015729 B = 0.003081 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.682271 B = 9085.702174 C =10525.917786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.049 4.049 4 C -0.136 4.136 5 C -0.115 4.115 6 C -0.160 4.160 7 C 0.570 3.430 8 O -0.584 6.584 9 N -0.602 5.602 10 C 0.109 3.891 11 C -0.144 4.144 12 C 0.167 3.833 13 H 0.074 0.926 14 N -0.727 5.727 15 C -0.238 4.238 16 H 0.080 0.920 17 C -0.071 4.071 18 N -0.967 5.967 19 Si 0.968 3.032 20 H -0.288 1.288 21 H -0.301 1.301 22 H -0.271 1.271 23 C 0.120 3.880 24 H 0.106 0.894 25 C -0.166 4.166 26 C -0.067 4.067 27 C -0.098 4.098 28 C -0.085 4.085 29 C -0.145 4.145 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.146 0.854 36 H 0.168 0.832 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.383 0.617 42 H 0.250 0.750 43 H 0.045 0.955 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.122 0.878 47 H 0.071 0.929 48 H 0.091 0.909 49 H 0.061 0.939 50 H 0.044 0.956 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.831 -14.981 15.875 22.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.049 4.049 4 C -0.154 4.154 5 C -0.133 4.133 6 C -0.163 4.163 7 C 0.362 3.638 8 O -0.466 6.466 9 N -0.334 5.334 10 C -0.013 4.013 11 C -0.185 4.185 12 C 0.057 3.943 13 H 0.092 0.908 14 N -0.370 5.370 15 C -0.370 4.370 16 H 0.097 0.903 17 C -0.263 4.263 18 N -0.617 5.617 19 Si 0.798 3.202 20 H -0.215 1.215 21 H -0.228 1.228 22 H -0.196 1.196 23 C 0.017 3.983 24 H 0.123 0.877 25 C -0.224 4.224 26 C -0.086 4.086 27 C -0.098 4.098 28 C -0.122 4.122 29 C -0.203 4.203 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.163 0.837 36 H 0.184 0.816 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.219 0.781 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.140 0.860 47 H 0.089 0.911 48 H 0.110 0.890 49 H 0.080 0.920 50 H 0.063 0.937 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.029 -14.623 16.336 22.133 hybrid contribution -0.332 0.991 -1.059 1.487 sum 2.697 -13.632 15.277 20.652 Atomic orbital electron populations 1.21763 0.94039 1.02728 1.01956 1.20736 0.96646 0.90906 1.04350 1.20314 0.95363 0.97185 0.92051 1.21301 1.00640 0.94504 0.98909 1.23010 0.95926 0.95211 0.99114 1.19743 1.07659 0.93305 0.95606 1.18352 0.76966 0.86574 0.81928 1.90697 1.55241 1.69137 1.31547 1.48475 1.62140 1.17433 1.05382 1.22298 0.98788 0.82418 0.97824 1.23386 1.01146 0.99894 0.94050 1.21389 0.93934 0.91890 0.87055 0.90780 1.42734 1.13854 1.70024 1.10387 1.19606 0.98023 1.28911 0.90413 0.90257 1.25464 0.96247 1.02987 1.01618 1.69794 1.06020 1.52579 1.33332 0.85219 0.76484 0.78177 0.80323 1.21476 1.22792 1.19564 1.22194 0.96977 0.97458 0.81713 0.87651 1.22539 0.94978 1.01954 1.02899 1.21143 0.96002 0.94688 0.96784 1.19893 1.00397 0.93151 0.96348 1.20638 0.99634 0.99520 0.92416 1.21761 0.97080 0.99728 1.01691 0.92563 0.93281 0.90621 0.89816 0.89159 0.83668 0.81573 0.91223 0.89687 0.92737 0.89422 0.78110 0.94098 0.93625 0.90412 0.90298 0.85994 0.91060 0.89049 0.91987 0.93687 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.72 71.98 0.70 -1.17 16 2 C -0.09 -1.19 5.38 29.85 0.16 -1.03 16 3 C -0.05 -0.95 5.14 -19.81 -0.10 -1.05 16 4 C -0.14 -2.94 9.66 22.23 0.21 -2.72 16 5 C -0.12 -2.98 6.39 22.53 0.14 -2.83 16 6 C -0.16 -4.73 5.25 -20.09 -0.11 -4.84 16 7 C 0.57 19.60 7.58 86.79 0.66 20.26 16 8 O -0.58 -23.30 16.60 -3.89 -0.06 -23.37 16 9 N -0.60 -19.27 3.08 -797.73 -2.46 -21.73 16 10 C 0.11 3.29 6.92 86.86 0.60 3.90 16 11 C -0.14 -4.78 6.77 31.99 0.22 -4.56 16 12 C 0.17 5.99 3.40 46.19 0.16 6.14 16 13 H 0.07 2.55 8.12 -2.39 -0.02 2.53 16 14 N -0.73 -33.33 5.03 -317.30 -1.59 -34.93 16 15 C -0.24 -12.22 9.98 84.03 0.84 -11.38 16 16 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 17 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 18 N -0.97 -56.31 13.06 21.65 0.28 -56.02 16 19 Si 0.97 44.19 29.55 68.60 2.03 46.22 16 20 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 C 0.12 3.73 2.71 45.35 0.12 3.85 16 24 H 0.11 2.91 6.15 -2.39 -0.01 2.90 16 25 C -0.17 -5.39 6.40 71.98 0.46 -4.93 16 26 C -0.07 -1.80 9.22 22.53 0.21 -1.59 16 27 C -0.10 -2.06 5.13 -19.90 -0.10 -2.16 16 28 C -0.08 -1.30 5.38 29.85 0.16 -1.14 16 29 C -0.15 -1.91 9.72 71.98 0.70 -1.21 16 30 H 0.06 0.73 6.79 -2.39 -0.02 0.71 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 33 H 0.08 0.97 8.05 -2.39 -0.02 0.95 16 34 H 0.09 0.98 5.59 -2.39 -0.01 0.96 16 35 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.17 4.33 2.16 -5.46 -0.01 4.32 16 37 H 0.07 2.17 8.00 -2.39 -0.02 2.15 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.38 18.69 5.01 -92.71 -0.46 18.22 16 42 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.04 1.71 7.20 -2.39 -0.02 1.69 16 44 H 0.08 2.56 7.72 -2.38 -0.02 2.54 16 45 H 0.08 2.40 4.50 -2.39 -0.01 2.39 16 46 H 0.12 3.39 7.66 -2.91 -0.02 3.37 16 47 H 0.07 1.10 8.05 -2.39 -0.02 1.08 16 48 H 0.09 1.12 5.60 -2.38 -0.01 1.10 16 49 H 0.06 0.75 6.79 -2.38 -0.02 0.73 16 50 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 51 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -65.09 387.46 4.17 -60.93 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: 0.47 Total: 38.73 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 5.50 Total: -9.83 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -3.77 Total: -112.68 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.06 Total: -23.37 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -65.09 4.17 -60.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987623273.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.891 kcal (2) G-P(sol) polarization free energy of solvation -65.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds