Wall clock time and date at job start Tue Mar 31 2020 16:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46673 * 2 1 4 4 C 1.38386 * 119.85543 * 264.99967 * 3 2 1 5 5 C 1.37929 * 120.14808 * 180.02562 * 4 3 2 6 6 C 1.39600 * 119.85299 * 359.97438 * 5 4 3 7 7 C 1.47842 * 120.14606 * 179.97438 * 6 5 4 8 8 O 1.21548 * 120.00065 * 196.99886 * 7 6 5 9 9 N 1.34779 * 120.00011 * 16.99043 * 7 6 5 10 10 C 1.47423 * 125.64761 * 173.78501 * 9 7 6 11 11 C 1.54907 * 104.83288 * 155.91083 * 10 9 7 12 12 C 1.55162 * 101.57959 * 37.01030 * 11 10 9 13 13 H 1.08992 * 110.71952 * 83.04269 * 12 11 10 14 14 N 1.46502 * 110.71820 * 206.13581 * 12 11 10 15 15 C 1.36935 * 120.00171 * 273.54490 * 14 12 11 16 16 H 1.08007 * 119.99600 * 0.02562 * 15 14 12 17 17 C 1.38808 * 120.00298 * 179.97438 * 15 14 12 18 18 N 1.31623 * 120.00058 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00215 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46778 * 59.99943 * 19 17 15 21 21 H 1.48500 * 109.47199 * 300.00382 * 19 17 15 22 22 H 1.48499 * 109.47478 * 179.97438 * 19 17 15 23 23 C 1.47018 * 125.64790 * 353.82920 * 9 7 6 24 24 H 1.09000 * 109.88464 * 300.44276 * 23 9 7 25 25 C 1.53006 * 109.88026 * 61.60290 * 23 9 7 26 26 C 1.39562 * 119.71039 * 0.25226 * 6 5 4 27 27 C 1.37979 * 119.84854 * 359.51465 * 26 6 5 28 28 C 1.50700 * 119.92466 * 180.23413 * 27 26 6 29 29 C 1.53002 * 109.46966 * 265.25433 * 28 27 26 30 30 H 1.09003 * 109.47155 * 60.00140 * 1 2 3 31 31 H 1.09005 * 109.46533 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47395 * 299.99779 * 1 2 3 33 33 H 1.08997 * 109.46963 * 240.00538 * 2 1 3 34 34 H 1.08999 * 109.47488 * 120.00203 * 2 1 3 35 35 H 1.08000 * 119.92218 * 359.97438 * 4 3 2 36 36 H 1.07996 * 120.07984 * 179.97438 * 5 4 3 37 37 H 1.09000 * 110.36544 * 37.06922 * 10 9 7 38 38 H 1.09004 * 110.45656 * 274.79785 * 10 9 7 39 39 H 1.08997 * 111.00316 * 278.93722 * 11 10 9 40 40 H 1.08998 * 111.00544 * 155.07910 * 11 10 9 41 41 H 0.97002 * 119.99876 * 93.54410 * 14 12 11 42 42 H 0.96999 * 119.99420 * 359.97438 * 18 17 15 43 43 H 1.09001 * 109.46778 * 195.20314 * 25 23 9 44 44 H 1.08995 * 109.47188 * 315.20582 * 25 23 9 45 45 H 1.09004 * 109.46847 * 75.21008 * 25 23 9 46 46 H 1.07994 * 120.07590 * 179.75227 * 26 6 5 47 47 H 1.08991 * 109.47491 * 25.25407 * 28 27 26 48 48 H 1.09001 * 109.47245 * 145.25726 * 28 27 26 49 49 H 1.09006 * 109.47435 * 300.00111 * 29 28 27 50 50 H 1.09001 * 109.46899 * 60.00081 * 29 28 27 51 51 H 1.09001 * 109.47166 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3605 2.0355 -1.1956 5 6 2.8212 3.3356 -1.2026 6 6 2.9556 4.0316 0.0000 7 6 3.4494 5.4252 0.0001 8 8 3.8582 5.9250 1.0299 9 7 3.4464 6.1413 -1.1417 10 6 3.7858 7.5710 -1.2601 11 6 4.2335 7.7518 -2.7320 12 6 3.2641 6.7929 -3.4724 13 1 2.3069 7.2800 -3.6580 14 7 3.8569 6.3242 -4.7275 15 6 3.7174 7.0663 -5.8698 16 1 3.1707 7.9975 -5.8454 17 6 4.2795 6.6225 -7.0589 18 7 4.9461 5.4879 -7.0885 19 14 4.0898 7.6352 -8.6170 20 1 4.6949 8.9759 -8.4126 21 1 2.6475 7.7867 -8.9365 22 1 4.7768 6.9488 -9.7404 23 6 3.1034 5.6261 -2.4753 24 1 3.7783 4.8134 -2.7436 25 6 1.6563 5.1293 -2.4847 26 6 2.6274 3.4043 1.2027 27 6 2.1631 2.1050 1.1952 28 6 1.8031 1.4278 2.4924 29 6 3.0000 0.6172 2.9937 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.2564 1.4957 -2.1252 36 1 3.0774 3.8141 -2.1363 37 1 4.6003 7.8250 -0.5818 38 1 2.9122 8.1885 -1.0507 39 1 5.2694 7.4404 -2.8662 40 1 4.0910 8.7814 -3.0601 41 1 4.3482 5.4881 -4.7493 42 1 5.0449 4.9622 -6.2793 43 1 1.4896 4.5128 -3.3680 44 1 1.4693 4.5379 -1.5884 45 1 0.9791 5.9832 -2.5045 46 1 2.7330 3.9359 2.1368 47 1 1.5382 2.1811 3.2343 48 1 0.9551 0.7621 2.3317 49 1 3.2650 -0.1362 2.2519 50 1 3.8480 1.2829 3.1545 51 1 2.7395 0.1269 3.9318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987623276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:11 Heat of formation + Delta-G solvation = 21.047054 kcal Electronic energy + Delta-G solvation = -29101.873498 eV Core-core repulsion = 25388.047490 eV Total energy + Delta-G solvation = -3713.826008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95279 -39.28086 -37.61370 -35.23524 -34.39573 -33.62711 -31.80177 -31.54337 -30.11491 -29.04063 -28.71507 -25.40525 -24.77812 -24.06326 -23.18397 -22.60225 -21.72804 -20.94347 -20.41072 -19.19871 -17.57628 -16.86338 -16.44820 -16.14774 -15.81779 -15.30461 -14.86623 -14.46712 -14.27965 -14.05679 -13.96141 -13.81598 -13.70116 -13.55064 -13.32302 -13.08773 -12.99321 -12.72414 -12.59638 -12.34975 -12.09378 -11.87895 -11.67608 -11.54726 -11.49571 -11.33633 -11.24560 -10.97663 -10.89408 -10.73829 -10.68055 -10.60701 -10.23711 -10.04583 -9.77257 -9.27647 -9.01667 -8.92062 -8.57583 -8.42538 -7.17741 -6.20372 -3.22770 0.83050 1.30503 2.85676 3.06056 3.47064 3.49660 3.67357 3.76586 4.40639 4.49467 4.57077 4.63178 4.71531 4.78465 4.83838 5.00022 5.02158 5.07368 5.10444 5.16829 5.23383 5.27096 5.38334 5.39137 5.40242 5.46255 5.53362 5.58922 5.62243 5.64251 5.69642 5.74545 5.77581 5.85265 5.89690 5.90931 5.97472 6.00810 6.07832 6.13296 6.17871 6.28388 6.31625 6.36536 6.44900 6.50869 6.55156 6.78386 6.84116 7.63542 7.71130 8.25226 8.64257 9.07610 9.94264 10.07184 11.27329 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.003039 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.637480 B = 9211.017383 C =10491.516891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.053 4.053 4 C -0.134 4.134 5 C -0.099 4.099 6 C -0.140 4.140 7 C 0.574 3.426 8 O -0.548 6.548 9 N -0.603 5.603 10 C 0.106 3.894 11 C -0.155 4.155 12 C 0.183 3.817 13 H 0.069 0.931 14 N -0.726 5.726 15 C -0.335 4.335 16 H 0.067 0.933 17 C -0.040 4.040 18 N -0.940 5.940 19 Si 1.080 2.920 20 H -0.294 1.294 21 H -0.294 1.294 22 H -0.285 1.285 23 C 0.110 3.890 24 H 0.086 0.914 25 C -0.177 4.177 26 C -0.054 4.054 27 C -0.100 4.100 28 C -0.085 4.085 29 C -0.149 4.149 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.128 0.872 36 H 0.161 0.839 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.368 0.632 42 H 0.255 0.745 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.130 0.870 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 -9.412 16.750 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.053 4.053 4 C -0.152 4.152 5 C -0.117 4.117 6 C -0.143 4.143 7 C 0.364 3.636 8 O -0.427 6.427 9 N -0.336 5.336 10 C -0.016 4.016 11 C -0.196 4.196 12 C 0.072 3.928 13 H 0.087 0.913 14 N -0.368 5.368 15 C -0.465 4.465 16 H 0.085 0.915 17 C -0.238 4.238 18 N -0.585 5.585 19 Si 0.910 3.090 20 H -0.222 1.222 21 H -0.222 1.222 22 H -0.210 1.210 23 C 0.006 3.994 24 H 0.103 0.897 25 C -0.235 4.235 26 C -0.073 4.073 27 C -0.100 4.100 28 C -0.122 4.122 29 C -0.206 4.206 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.146 0.854 36 H 0.178 0.822 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.202 0.798 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.148 0.852 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.010 -8.912 15.684 19.738 hybrid contribution -0.179 -0.144 1.547 1.564 sum -8.189 -9.055 17.231 21.118 Atomic orbital electron populations 1.21760 0.94554 1.01755 1.02413 1.20663 0.96351 0.92701 1.03163 1.19946 0.96833 0.95905 0.92637 1.21013 1.01503 0.94926 0.97735 1.22699 0.95049 0.94463 0.99443 1.19807 1.05800 0.94296 0.94430 1.17951 0.78100 0.85358 0.82166 1.90733 1.48142 1.72144 1.31720 1.48395 1.66829 1.11435 1.06934 1.22284 1.00105 0.80748 0.98496 1.23562 1.01655 1.01951 0.92458 1.21227 0.95681 0.90634 0.85306 0.91348 1.42337 1.64383 1.25732 1.04373 1.19988 1.33536 1.04451 0.88565 0.91531 1.25787 0.97935 0.99476 1.00642 1.70905 1.43214 1.14040 1.30294 0.83249 0.75702 0.74423 0.75634 1.22184 1.22169 1.21005 1.22289 0.96229 0.98152 0.82700 0.89683 1.22791 0.95440 1.02154 1.03098 1.21051 0.95278 0.93678 0.97312 1.19602 1.01616 0.93990 0.94832 1.20561 0.98690 0.99246 0.93708 1.21780 0.98052 1.00034 1.00714 0.92328 0.92332 0.92432 0.90845 0.90527 0.85439 0.82191 0.90806 0.91698 0.90757 0.90333 0.79845 0.93374 0.90717 0.90663 0.92063 0.85177 0.91088 0.90644 0.92457 0.92404 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.72 37.16 0.36 -0.71 16 2 C -0.09 -0.74 5.38 -27.88 -0.15 -0.89 16 3 C -0.05 -0.56 5.14 -104.53 -0.54 -1.10 16 4 C -0.13 -1.55 9.66 -39.64 -0.38 -1.94 16 5 C -0.10 -1.32 6.22 -39.19 -0.24 -1.56 16 6 C -0.14 -2.06 5.07 -104.97 -0.53 -2.59 16 7 C 0.57 9.77 7.62 -12.33 -0.09 9.67 16 8 O -0.55 -10.71 16.70 5.32 0.09 -10.62 16 9 N -0.60 -9.76 3.06 -164.12 -0.50 -10.26 16 10 C 0.11 1.65 6.94 -2.53 -0.02 1.63 16 11 C -0.16 -2.65 6.77 -24.58 -0.17 -2.81 16 12 C 0.18 3.38 3.11 -66.09 -0.21 3.17 16 13 H 0.07 1.29 7.58 -51.93 -0.39 0.89 16 14 N -0.73 -16.74 5.25 -51.65 -0.27 -17.02 16 15 C -0.33 -8.82 9.98 -15.06 -0.15 -8.97 16 16 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 17 C -0.04 -1.12 5.50 -17.43 -0.10 -1.21 16 18 N -0.94 -27.80 13.70 55.49 0.76 -27.04 16 19 Si 1.08 24.90 29.92 -169.99 -5.09 19.81 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.11 1.75 2.49 -66.95 -0.17 1.58 16 24 H 0.09 1.39 5.72 -51.93 -0.30 1.09 16 25 C -0.18 -2.50 7.82 37.16 0.29 -2.21 16 26 C -0.05 -0.72 9.22 -39.18 -0.36 -1.08 16 27 C -0.10 -1.10 5.13 -104.68 -0.54 -1.64 16 28 C -0.08 -0.71 5.37 -27.88 -0.15 -0.86 16 29 C -0.15 -1.15 9.72 37.16 0.36 -0.79 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.42 6.79 -51.93 -0.35 0.06 16 33 H 0.07 0.55 8.05 -51.93 -0.42 0.14 16 34 H 0.08 0.55 5.59 -51.93 -0.29 0.26 16 35 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 36 H 0.16 2.21 2.63 -52.49 -0.14 2.07 16 37 H 0.07 1.16 7.98 -51.93 -0.41 0.74 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.37 8.76 6.34 -40.82 -0.26 8.50 16 42 H 0.26 7.38 6.77 -40.82 -0.28 7.10 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.02 4.23 -51.93 -0.22 0.80 16 45 H 0.06 0.85 7.74 -51.93 -0.40 0.45 16 46 H 0.13 1.71 7.74 -52.49 -0.41 1.30 16 47 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 48 H 0.08 0.55 5.60 -51.93 -0.29 0.26 16 49 H 0.06 0.44 6.79 -51.93 -0.35 0.08 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 389.40 15.07 5.87 5.87 Total: -1.00 -31.19 389.40 -9.86 -41.04 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -7.94 Total: 10.50 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.78 Total: -12.29 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.01 Total: -54.31 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.09 Total: 19.81 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.19 -9.86 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987623276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.092 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds