Wall clock time and date at job start Tue Mar 31 2020 16:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46673 * 2 1 4 4 C 1.38386 * 119.85543 * 264.99967 * 3 2 1 5 5 C 1.37929 * 120.14808 * 180.02562 * 4 3 2 6 6 C 1.39600 * 119.85299 * 359.97438 * 5 4 3 7 7 C 1.47842 * 120.14606 * 179.97438 * 6 5 4 8 8 O 1.21548 * 120.00065 * 196.99886 * 7 6 5 9 9 N 1.34779 * 120.00011 * 16.99043 * 7 6 5 10 10 C 1.47423 * 125.64761 * 173.78501 * 9 7 6 11 11 C 1.54907 * 104.83288 * 155.91083 * 10 9 7 12 12 C 1.55162 * 101.57959 * 37.01030 * 11 10 9 13 13 H 1.08992 * 110.71952 * 83.04269 * 12 11 10 14 14 N 1.46502 * 110.71820 * 206.13581 * 12 11 10 15 15 C 1.36935 * 120.00171 * 273.54490 * 14 12 11 16 16 H 1.08007 * 119.99600 * 0.02562 * 15 14 12 17 17 C 1.38808 * 120.00298 * 179.97438 * 15 14 12 18 18 N 1.31623 * 120.00058 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00215 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46778 * 59.99943 * 19 17 15 21 21 H 1.48500 * 109.47199 * 300.00382 * 19 17 15 22 22 H 1.48499 * 109.47478 * 179.97438 * 19 17 15 23 23 C 1.47018 * 125.64790 * 353.82920 * 9 7 6 24 24 H 1.09000 * 109.88464 * 300.44276 * 23 9 7 25 25 C 1.53006 * 109.88026 * 61.60290 * 23 9 7 26 26 C 1.39562 * 119.71039 * 0.25226 * 6 5 4 27 27 C 1.37979 * 119.84854 * 359.51465 * 26 6 5 28 28 C 1.50700 * 119.92466 * 180.23413 * 27 26 6 29 29 C 1.53002 * 109.46966 * 265.25433 * 28 27 26 30 30 H 1.09003 * 109.47155 * 60.00140 * 1 2 3 31 31 H 1.09005 * 109.46533 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47395 * 299.99779 * 1 2 3 33 33 H 1.08997 * 109.46963 * 240.00538 * 2 1 3 34 34 H 1.08999 * 109.47488 * 120.00203 * 2 1 3 35 35 H 1.08000 * 119.92218 * 359.97438 * 4 3 2 36 36 H 1.07996 * 120.07984 * 179.97438 * 5 4 3 37 37 H 1.09000 * 110.36544 * 37.06922 * 10 9 7 38 38 H 1.09004 * 110.45656 * 274.79785 * 10 9 7 39 39 H 1.08997 * 111.00316 * 278.93722 * 11 10 9 40 40 H 1.08998 * 111.00544 * 155.07910 * 11 10 9 41 41 H 0.97002 * 119.99876 * 93.54410 * 14 12 11 42 42 H 0.96999 * 119.99420 * 359.97438 * 18 17 15 43 43 H 1.09001 * 109.46778 * 195.20314 * 25 23 9 44 44 H 1.08995 * 109.47188 * 315.20582 * 25 23 9 45 45 H 1.09004 * 109.46847 * 75.21008 * 25 23 9 46 46 H 1.07994 * 120.07590 * 179.75227 * 26 6 5 47 47 H 1.08991 * 109.47491 * 25.25407 * 28 27 26 48 48 H 1.09001 * 109.47245 * 145.25726 * 28 27 26 49 49 H 1.09006 * 109.47435 * 300.00111 * 29 28 27 50 50 H 1.09001 * 109.46899 * 60.00081 * 29 28 27 51 51 H 1.09001 * 109.47166 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3605 2.0355 -1.1956 5 6 2.8212 3.3356 -1.2026 6 6 2.9556 4.0316 0.0000 7 6 3.4494 5.4252 0.0001 8 8 3.8582 5.9250 1.0299 9 7 3.4464 6.1413 -1.1417 10 6 3.7858 7.5710 -1.2601 11 6 4.2335 7.7518 -2.7320 12 6 3.2641 6.7929 -3.4724 13 1 2.3069 7.2800 -3.6580 14 7 3.8569 6.3242 -4.7275 15 6 3.7174 7.0663 -5.8698 16 1 3.1707 7.9975 -5.8454 17 6 4.2795 6.6225 -7.0589 18 7 4.9461 5.4879 -7.0885 19 14 4.0898 7.6352 -8.6170 20 1 4.6949 8.9759 -8.4126 21 1 2.6475 7.7867 -8.9365 22 1 4.7768 6.9488 -9.7404 23 6 3.1034 5.6261 -2.4753 24 1 3.7783 4.8134 -2.7436 25 6 1.6563 5.1293 -2.4847 26 6 2.6274 3.4043 1.2027 27 6 2.1631 2.1050 1.1952 28 6 1.8031 1.4278 2.4924 29 6 3.0000 0.6172 2.9937 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.2564 1.4957 -2.1252 36 1 3.0774 3.8141 -2.1363 37 1 4.6003 7.8250 -0.5818 38 1 2.9122 8.1885 -1.0507 39 1 5.2694 7.4404 -2.8662 40 1 4.0910 8.7814 -3.0601 41 1 4.3482 5.4881 -4.7493 42 1 5.0449 4.9622 -6.2793 43 1 1.4896 4.5128 -3.3680 44 1 1.4693 4.5379 -1.5884 45 1 0.9791 5.9832 -2.5045 46 1 2.7330 3.9359 2.1368 47 1 1.5382 2.1811 3.2343 48 1 0.9551 0.7621 2.3317 49 1 3.2650 -0.1362 2.2519 50 1 3.8480 1.2829 3.1545 51 1 2.7395 0.1269 3.9318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987623276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:10 Heat of formation + Delta-G solvation = 4.907944 kcal Electronic energy + Delta-G solvation = -29102.573343 eV Core-core repulsion = 25388.047490 eV Total energy + Delta-G solvation = -3714.525853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.14694 -40.33906 -39.03409 -36.46167 -35.91692 -34.36668 -33.32266 -32.88236 -31.13307 -30.45554 -29.74052 -26.87329 -25.79370 -25.03088 -24.93349 -23.66991 -22.55486 -22.10773 -21.70931 -20.48175 -19.39424 -18.07769 -17.72436 -17.28672 -16.90148 -16.53067 -16.31128 -15.88642 -15.51748 -15.29057 -15.05167 -14.90873 -14.66921 -14.66630 -14.33320 -14.26233 -14.03467 -13.93852 -13.63146 -13.40749 -13.21242 -13.01008 -12.75943 -12.72261 -12.66503 -12.43595 -12.35801 -12.14921 -12.06582 -12.02621 -11.87203 -11.80101 -11.65203 -11.41239 -11.29230 -11.00695 -10.91043 -9.98878 -9.75316 -9.45699 -9.13636 -8.36123 -5.32586 -0.20335 0.34755 1.61815 1.66255 1.70550 1.77516 1.86668 2.72102 2.72867 3.21890 3.36289 3.47496 3.62467 3.75805 3.77343 3.80384 3.85706 3.99192 4.11297 4.12863 4.20102 4.24353 4.32457 4.42508 4.46453 4.50756 4.52099 4.56300 4.59005 4.66760 4.75190 4.79149 4.82433 4.86335 4.99399 5.02856 5.04529 5.07566 5.09586 5.11713 5.14029 5.23492 5.28103 5.32872 5.34527 5.45469 5.47977 5.62858 5.63806 5.92338 6.32154 6.51830 6.92995 7.07275 7.96394 8.07410 9.15302 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.003039 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.637480 B = 9211.017383 C =10491.516891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.046 4.046 4 C -0.137 4.137 5 C -0.105 4.105 6 C -0.161 4.161 7 C 0.570 3.430 8 O -0.581 6.581 9 N -0.604 5.604 10 C 0.110 3.890 11 C -0.146 4.146 12 C 0.178 3.822 13 H 0.071 0.929 14 N -0.736 5.736 15 C -0.327 4.327 16 H 0.071 0.929 17 C -0.099 4.099 18 N -0.975 5.975 19 Si 1.124 2.876 20 H -0.280 1.280 21 H -0.276 1.276 22 H -0.297 1.297 23 C 0.122 3.878 24 H 0.080 0.920 25 C -0.168 4.168 26 C -0.064 4.064 27 C -0.097 4.097 28 C -0.084 4.084 29 C -0.147 4.147 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.144 0.856 36 H 0.153 0.847 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.361 0.639 42 H 0.245 0.755 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.124 0.876 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.060 0.940 50 H 0.042 0.958 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.205 -10.466 17.525 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.046 4.046 4 C -0.155 4.155 5 C -0.123 4.123 6 C -0.164 4.164 7 C 0.362 3.638 8 O -0.463 6.463 9 N -0.336 5.336 10 C -0.012 4.012 11 C -0.187 4.187 12 C 0.068 3.932 13 H 0.089 0.911 14 N -0.378 5.378 15 C -0.458 4.458 16 H 0.089 0.911 17 C -0.291 4.291 18 N -0.623 5.623 19 Si 0.950 3.050 20 H -0.206 1.206 21 H -0.202 1.202 22 H -0.223 1.223 23 C 0.018 3.982 24 H 0.097 0.903 25 C -0.225 4.225 26 C -0.083 4.083 27 C -0.097 4.097 28 C -0.121 4.121 29 C -0.204 4.204 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.161 0.839 36 H 0.169 0.831 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.194 0.806 42 H 0.056 0.944 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.142 0.858 47 H 0.092 0.908 48 H 0.112 0.888 49 H 0.079 0.921 50 H 0.062 0.938 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.763 -9.942 16.497 21.594 hybrid contribution 0.337 0.144 1.412 1.459 sum -9.426 -9.799 17.909 22.486 Atomic orbital electron populations 1.21755 0.93691 1.02787 1.02097 1.20748 0.96940 0.90807 1.04278 1.20300 0.95253 0.97149 0.91945 1.21250 1.00934 0.94281 0.99013 1.22583 0.95847 0.95311 0.98520 1.19716 1.07775 0.93332 0.95581 1.18374 0.77511 0.86223 0.81671 1.90702 1.49802 1.73060 1.32722 1.48436 1.66606 1.11637 1.06921 1.22284 1.00853 0.80921 0.97161 1.23391 1.00089 1.01856 0.93357 1.21386 0.95585 0.91899 0.84331 0.91107 1.42446 1.64733 1.25365 1.05229 1.20300 1.31759 1.04311 0.89420 0.91131 1.27061 0.98212 0.99960 1.03869 1.71001 1.45731 1.15517 1.30015 0.82662 0.76533 0.73620 0.72233 1.20633 1.20245 1.22300 1.22126 0.97450 0.96797 0.81807 0.90278 1.22704 0.93901 1.02313 1.03599 1.21134 0.95907 0.94719 0.96575 1.19902 1.00312 0.93105 0.96359 1.20639 0.99560 0.99564 0.92335 1.21773 0.97172 0.99746 1.01737 0.93108 0.90665 0.92329 0.90049 0.89184 0.83860 0.83058 0.90950 0.89818 0.92650 0.89538 0.80622 0.94426 0.90560 0.89831 0.91777 0.85784 0.90789 0.88850 0.92145 0.93839 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.72 71.98 0.70 -0.97 16 2 C -0.09 -1.18 5.38 29.85 0.16 -1.02 16 3 C -0.05 -0.88 5.14 -19.81 -0.10 -0.98 16 4 C -0.14 -2.99 9.66 22.23 0.21 -2.77 16 5 C -0.10 -2.76 6.22 22.53 0.14 -2.62 16 6 C -0.16 -4.74 5.07 -20.09 -0.10 -4.84 16 7 C 0.57 19.68 7.62 86.78 0.66 20.34 16 8 O -0.58 -23.19 16.70 -3.87 -0.06 -23.26 16 9 N -0.60 -19.60 3.06 -791.44 -2.43 -22.02 16 10 C 0.11 3.39 6.94 86.85 0.60 3.99 16 11 C -0.15 -4.97 6.77 31.99 0.22 -4.75 16 12 C 0.18 6.53 3.11 46.18 0.14 6.68 16 13 H 0.07 2.60 7.58 -2.39 -0.02 2.58 16 14 N -0.74 -34.26 5.25 -317.33 -1.67 -35.92 16 15 C -0.33 -17.16 9.98 84.03 0.84 -16.32 16 16 H 0.07 3.60 7.83 -2.91 -0.02 3.57 16 17 C -0.10 -5.50 5.50 84.86 0.47 -5.04 16 18 N -0.97 -58.66 13.70 21.65 0.30 -58.36 16 19 Si 1.12 49.96 29.92 68.60 2.05 52.01 16 20 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 21 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 22 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 23 C 0.12 3.87 2.49 45.34 0.11 3.98 16 24 H 0.08 2.65 5.72 -2.39 -0.01 2.64 16 25 C -0.17 -4.61 7.82 71.98 0.56 -4.05 16 26 C -0.06 -1.68 9.22 22.53 0.21 -1.47 16 27 C -0.10 -1.97 5.13 -19.90 -0.10 -2.07 16 28 C -0.08 -1.21 5.37 29.85 0.16 -1.05 16 29 C -0.15 -1.94 9.72 71.98 0.70 -1.24 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.63 8.14 -2.38 -0.02 0.62 16 32 H 0.06 0.66 6.79 -2.39 -0.02 0.64 16 33 H 0.08 0.97 8.05 -2.39 -0.02 0.95 16 34 H 0.09 0.97 5.59 -2.39 -0.01 0.95 16 35 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 36 H 0.15 4.20 2.63 -2.91 -0.01 4.19 16 37 H 0.07 2.27 7.98 -2.39 -0.02 2.25 16 38 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 39 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.36 17.67 6.34 -92.71 -0.59 17.08 16 42 H 0.25 14.62 6.77 -92.71 -0.63 13.99 16 43 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.08 2.20 4.23 -2.39 -0.01 2.19 16 45 H 0.06 1.71 7.74 -2.39 -0.02 1.69 16 46 H 0.12 3.32 7.74 -2.91 -0.02 3.29 16 47 H 0.07 1.05 8.05 -2.39 -0.02 1.03 16 48 H 0.09 1.04 5.60 -2.39 -0.01 1.03 16 49 H 0.06 0.76 6.79 -2.38 -0.02 0.74 16 50 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -67.35 389.40 4.27 -63.08 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: 0.50 Total: 38.68 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 5.58 Total: -14.21 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -3.79 Total: -116.31 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.06 Total: -23.26 kcal Atomic # 14 Polarization: 49.96 SS G_CDS: 2.05 Total: 52.01 kcal Total: -67.35 4.27 -63.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987623276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.991 kcal (2) G-P(sol) polarization free energy of solvation -67.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds