Wall clock time and date at job start Tue Mar 31 2020 16:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50704 * 109.47388 * 2 1 4 4 C 1.38226 * 120.00016 * 89.99853 * 3 2 1 5 5 C 1.38238 * 120.00254 * 180.02562 * 4 3 2 6 6 C 1.38241 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99882 * 179.97438 * 6 5 4 8 8 C 1.52992 * 109.47038 * 89.99895 * 7 6 5 9 9 C 1.50700 * 109.47038 * 180.02562 * 8 7 6 10 10 O 1.21281 * 119.99891 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00225 * 179.97438 * 9 8 7 12 12 C 1.48207 * 119.97021 * 180.02562 * 11 9 8 13 13 C 1.47136 * 110.34354 * 102.51750 * 12 11 9 14 14 C 1.53789 * 111.84457 * 58.29499 * 13 12 11 15 15 N 1.43465 * 107.95825 * 281.67085 * 14 13 12 16 16 C 1.36944 * 118.93846 * 273.60773 * 15 14 13 17 17 H 1.08000 * 119.99821 * 24.61982 * 16 15 14 18 18 C 1.38805 * 120.00011 * 204.62172 * 16 15 14 19 19 N 1.31621 * 119.99891 * 203.00951 * 18 16 15 20 20 Si 1.86805 * 120.00190 * 23.00689 * 18 16 15 21 21 H 1.48500 * 109.47330 * 265.74629 * 20 18 16 22 22 H 1.48496 * 109.47260 * 145.74620 * 20 18 16 23 23 H 1.48498 * 109.47188 * 25.74356 * 20 18 16 24 24 C 1.48859 * 122.12251 * 93.88897 * 15 14 13 25 25 C 1.43619 * 119.96551 * 0.02562 * 11 9 8 26 26 C 1.38237 * 119.99975 * 0.25074 * 6 5 4 27 27 C 1.38234 * 119.99543 * 270.02409 * 3 2 1 28 28 H 1.08998 * 109.47485 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47350 * 299.99975 * 1 2 3 30 30 H 1.08999 * 109.47251 * 60.00217 * 1 2 3 31 31 H 1.09004 * 109.47372 * 239.99968 * 2 1 3 32 32 H 1.08999 * 109.47251 * 119.99783 * 2 1 3 33 33 H 1.07998 * 120.00426 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.00443 * 179.97438 * 5 4 3 35 35 H 1.09005 * 109.46671 * 329.99964 * 7 6 5 36 36 H 1.09000 * 109.46679 * 210.00139 * 7 6 5 37 37 H 1.09004 * 109.47760 * 60.00155 * 8 7 6 38 38 H 1.09000 * 109.47585 * 299.99689 * 8 7 6 39 39 H 1.08997 * 109.32692 * 342.24266 * 12 11 9 40 40 H 1.09005 * 109.18498 * 222.69328 * 12 11 9 41 41 H 1.09001 * 109.00324 * 297.68618 * 13 12 11 42 42 H 1.09000 * 108.94712 * 178.86542 * 13 12 11 43 43 H 1.08997 * 109.76815 * 162.05216 * 14 13 12 44 44 H 1.09006 * 109.80641 * 41.30596 * 14 13 12 45 45 H 0.96998 * 119.99910 * 5.15680 * 19 18 16 46 46 H 1.08995 * 109.48053 * 80.34635 * 24 15 14 47 47 H 1.09000 * 109.48016 * 200.38205 * 24 15 14 48 48 H 1.09003 * 108.87915 * 31.42135 * 25 11 9 49 49 H 1.09004 * 108.87092 * 149.96245 * 25 11 9 50 50 H 1.07998 * 119.99751 * 179.72606 * 26 6 5 51 51 H 1.07998 * 120.00288 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7231 3.3759 1.1971 6 6 2.9535 4.0275 -0.0001 7 6 3.4548 5.4487 -0.0001 8 6 4.9847 5.4498 0.0006 9 6 5.4860 6.8710 0.0012 10 8 4.6972 7.7922 0.0016 11 7 6.8110 7.1183 0.0024 12 6 7.3032 8.5162 0.0036 13 6 7.7540 8.8986 1.3510 14 6 8.8674 7.9714 1.8665 15 7 8.2561 6.7540 2.3165 16 6 7.7860 6.6838 3.6008 17 1 7.5061 7.5866 4.1234 18 6 7.6694 5.4525 4.2309 19 7 6.8331 5.3045 5.2364 20 14 8.6992 4.0056 3.6517 21 1 7.9187 3.2008 2.6779 22 1 9.0617 3.1584 4.8162 23 1 9.9359 4.5074 3.0006 24 6 8.1218 5.5625 1.4342 25 6 7.7444 6.0268 0.0025 26 6 2.7187 3.3774 -1.1972 27 6 2.2623 2.0725 -1.1972 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0823 1.5636 2.1324 34 1 2.9027 3.8852 2.1324 35 1 3.0907 5.9624 0.8897 36 1 3.0914 5.9621 -0.8904 37 1 5.3490 4.9361 -0.8891 38 1 5.3481 4.9364 0.8908 39 1 6.4993 9.1820 -0.3104 40 1 8.1365 8.6032 -0.6938 41 1 6.9071 8.8511 2.0354 42 1 8.1293 9.9216 1.3215 43 1 9.3909 8.4490 2.6947 44 1 9.5702 7.7553 1.0618 45 1 6.2446 6.0330 5.4891 46 1 9.0677 5.0218 1.4072 47 1 7.3403 4.9092 1.8222 48 1 7.3052 5.1870 -0.5360 49 1 8.6526 6.3395 -0.5129 50 1 2.8945 3.8880 -2.1325 51 1 2.0822 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989648266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:15 Heat of formation + Delta-G solvation = -0.523805 kcal Electronic energy + Delta-G solvation = -29161.126699 eV Core-core repulsion = 25446.365308 eV Total energy + Delta-G solvation = -3714.761391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.01245 -39.37337 -37.24202 -35.12850 -34.35658 -33.14809 -32.12723 -31.39880 -30.85405 -28.86889 -27.65404 -26.03043 -24.86146 -23.16203 -22.88338 -22.66961 -21.63745 -20.32996 -19.85051 -18.55804 -17.47682 -16.77183 -16.02878 -15.94055 -15.81264 -15.25747 -15.08826 -14.73542 -14.37410 -14.05688 -13.79051 -13.76125 -13.48076 -13.32745 -13.18583 -13.01188 -12.95738 -12.65007 -12.43327 -12.22648 -11.97188 -11.80981 -11.59494 -11.48997 -11.39745 -11.31937 -11.03521 -10.91474 -10.76826 -10.64994 -10.41085 -10.30194 -10.00233 -9.73496 -9.38032 -9.19722 -8.84605 -8.54538 -8.42770 -8.17264 -6.97544 -6.32501 -3.29309 1.37490 1.47878 3.03151 3.35553 3.43630 3.50392 3.64076 3.81281 4.57937 4.64462 4.75152 4.79176 4.90565 5.02889 5.06583 5.14050 5.20752 5.26192 5.31581 5.37803 5.40662 5.41084 5.49134 5.54074 5.55444 5.58447 5.72313 5.73866 5.80020 5.82024 5.85587 5.90771 5.98800 6.01915 6.06589 6.12152 6.21275 6.28182 6.32524 6.33954 6.45201 6.49691 6.50756 6.65456 6.69658 6.77185 6.88338 7.08538 7.10952 7.84307 8.05497 8.45076 8.60062 9.03685 9.65624 10.13526 11.12143 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.003738 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.191046 B = 7487.897790 C = 8952.826078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.114 4.114 5 C -0.107 4.107 6 C -0.082 4.082 7 C -0.063 4.063 8 C -0.134 4.134 9 C 0.523 3.477 10 O -0.554 6.554 11 N -0.588 5.588 12 C 0.129 3.871 13 C -0.168 4.168 14 C 0.163 3.837 15 N -0.598 5.598 16 C -0.346 4.346 17 H 0.066 0.934 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 1.052 2.948 21 H -0.296 1.296 22 H -0.301 1.301 23 H -0.286 1.286 24 C 0.101 3.899 25 C 0.093 3.907 26 C -0.115 4.115 27 C -0.120 4.120 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.034 0.966 45 H 0.264 0.736 46 H 0.040 0.960 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.119 0.881 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.676 -6.200 -15.065 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.132 4.132 5 C -0.125 4.125 6 C -0.082 4.082 7 C -0.100 4.100 8 C -0.174 4.174 9 C 0.312 3.688 10 O -0.433 6.433 11 N -0.319 5.319 12 C 0.008 3.992 13 C -0.209 4.209 14 C 0.035 3.965 15 N -0.321 5.321 16 C -0.474 4.474 17 H 0.084 0.916 18 C -0.212 4.212 19 N -0.556 5.556 20 Si 0.883 3.117 21 H -0.224 1.224 22 H -0.229 1.229 23 H -0.213 1.213 24 C -0.026 4.026 25 C -0.033 4.033 26 C -0.133 4.133 27 C -0.138 4.138 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.087 0.913 50 H 0.137 0.863 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.692 -7.263 -14.738 17.389 hybrid contribution -0.190 1.535 -0.161 1.555 sum -5.883 -5.728 -14.899 17.012 Atomic orbital electron populations 1.21743 0.94912 1.01470 1.02211 1.20523 0.96027 0.92896 1.02702 1.19854 0.99853 0.96147 0.93289 1.21033 0.99799 0.94875 0.97497 1.21193 0.98460 0.94794 0.98096 1.19935 0.98910 0.96158 0.93163 1.20313 0.93534 0.92021 1.04165 1.21687 0.96516 0.94620 1.04583 1.20529 0.81913 0.91319 0.75082 1.90626 1.54989 1.46725 1.50952 1.47358 1.05411 1.06883 1.72255 1.20558 0.98687 0.82284 0.97684 1.21818 1.02394 0.99320 0.97384 1.20322 0.92059 0.87281 0.96888 1.43908 1.68257 1.09588 1.10309 1.20223 1.41730 0.95508 0.89957 0.91617 1.26090 0.99974 0.99215 0.95950 1.70835 1.20473 1.34063 1.30276 0.84054 0.76853 0.76162 0.74594 1.22373 1.22867 1.21252 1.22683 0.99319 0.90906 0.89645 1.21874 0.93094 0.89632 0.98736 1.21007 1.00070 0.94779 0.97490 1.20936 1.00670 0.94890 0.97269 0.92584 0.92524 0.92669 0.91259 0.91075 0.86169 0.85626 0.90150 0.90588 0.89352 0.88220 0.90338 0.92127 0.91198 0.92541 0.93097 0.94725 0.92623 0.94242 0.91018 0.90967 0.91324 0.86270 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.15 0.37 -0.81 16 2 C -0.08 -0.76 6.06 -27.88 -0.17 -0.93 16 3 C -0.09 -1.05 5.13 -104.63 -0.54 -1.59 16 4 C -0.11 -1.46 9.70 -39.59 -0.38 -1.85 16 5 C -0.11 -1.54 9.70 -39.58 -0.38 -1.92 16 6 C -0.08 -1.13 5.13 -104.62 -0.54 -1.66 16 7 C -0.06 -0.93 4.63 -27.89 -0.13 -1.06 16 8 C -0.13 -2.09 4.24 -27.89 -0.12 -2.21 16 9 C 0.52 9.61 7.67 -10.98 -0.08 9.52 16 10 O -0.55 -11.72 15.42 5.56 0.09 -11.63 16 11 N -0.59 -10.15 2.46 -176.47 -0.43 -10.59 16 12 C 0.13 2.10 5.70 -5.92 -0.03 2.07 16 13 C -0.17 -3.02 5.64 -29.14 -0.16 -3.18 16 14 C 0.16 3.15 5.63 -5.24 -0.03 3.13 16 15 N -0.60 -13.70 2.33 -171.81 -0.40 -14.10 16 16 C -0.35 -9.50 9.55 -15.06 -0.14 -9.64 16 17 H 0.07 1.98 8.06 -52.49 -0.42 1.56 16 18 C -0.01 -0.31 5.14 -17.43 -0.09 -0.40 16 19 N -0.92 -28.07 13.70 55.49 0.76 -27.31 16 20 Si 1.05 25.45 24.43 -169.99 -4.15 21.30 16 21 H -0.30 -6.67 6.75 56.52 0.38 -6.29 16 22 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.29 -6.53 6.41 56.52 0.36 -6.17 16 24 C 0.10 2.02 4.54 -1.59 -0.01 2.02 16 25 C 0.09 1.46 5.06 -4.42 -0.02 1.44 16 26 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 27 C -0.12 -1.34 9.70 -39.58 -0.38 -1.73 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.08 1.33 8.04 -51.93 -0.42 0.91 16 36 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 37 H 0.09 1.14 7.37 -51.93 -0.38 0.76 16 38 H 0.10 1.73 7.35 -51.93 -0.38 1.35 16 39 H 0.08 1.32 7.12 -51.93 -0.37 0.95 16 40 H 0.06 0.82 8.05 -51.93 -0.42 0.40 16 41 H 0.07 1.55 7.91 -51.93 -0.41 1.14 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.05 1.02 8.02 -51.93 -0.42 0.61 16 44 H 0.03 0.59 7.59 -51.93 -0.39 0.20 16 45 H 0.26 8.12 8.73 -40.82 -0.36 7.76 16 46 H 0.04 0.78 5.81 -51.93 -0.30 0.48 16 47 H 0.07 1.59 4.75 -51.93 -0.25 1.34 16 48 H 0.07 0.96 6.38 -51.93 -0.33 0.63 16 49 H 0.07 0.94 7.72 -51.93 -0.40 0.54 16 50 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 51 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 393.33 15.07 5.93 5.93 Total: -1.00 -32.44 393.33 -10.19 -42.63 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.75 Total: 4.35 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -3.23 Total: -10.58 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.07 Total: -51.99 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -4.15 Total: 21.30 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.44 -10.19 -42.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989648266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.109 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds