Wall clock time and date at job start Tue Mar 31 2020 16:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50704 * 109.47388 * 2 1 4 4 C 1.38226 * 120.00016 * 89.99853 * 3 2 1 5 5 C 1.38238 * 120.00254 * 180.02562 * 4 3 2 6 6 C 1.38241 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99882 * 179.97438 * 6 5 4 8 8 C 1.52992 * 109.47038 * 89.99895 * 7 6 5 9 9 C 1.50700 * 109.47038 * 180.02562 * 8 7 6 10 10 O 1.21281 * 119.99891 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00225 * 179.97438 * 9 8 7 12 12 C 1.48207 * 119.97021 * 180.02562 * 11 9 8 13 13 C 1.47136 * 110.34354 * 102.51750 * 12 11 9 14 14 C 1.53789 * 111.84457 * 58.29499 * 13 12 11 15 15 N 1.43465 * 107.95825 * 281.67085 * 14 13 12 16 16 C 1.36944 * 118.93846 * 273.60773 * 15 14 13 17 17 H 1.08000 * 119.99821 * 24.61982 * 16 15 14 18 18 C 1.38805 * 120.00011 * 204.62172 * 16 15 14 19 19 N 1.31621 * 119.99891 * 203.00951 * 18 16 15 20 20 Si 1.86805 * 120.00190 * 23.00689 * 18 16 15 21 21 H 1.48500 * 109.47330 * 265.74629 * 20 18 16 22 22 H 1.48496 * 109.47260 * 145.74620 * 20 18 16 23 23 H 1.48498 * 109.47188 * 25.74356 * 20 18 16 24 24 C 1.48859 * 122.12251 * 93.88897 * 15 14 13 25 25 C 1.43619 * 119.96551 * 0.02562 * 11 9 8 26 26 C 1.38237 * 119.99975 * 0.25074 * 6 5 4 27 27 C 1.38234 * 119.99543 * 270.02409 * 3 2 1 28 28 H 1.08998 * 109.47485 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47350 * 299.99975 * 1 2 3 30 30 H 1.08999 * 109.47251 * 60.00217 * 1 2 3 31 31 H 1.09004 * 109.47372 * 239.99968 * 2 1 3 32 32 H 1.08999 * 109.47251 * 119.99783 * 2 1 3 33 33 H 1.07998 * 120.00426 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.00443 * 179.97438 * 5 4 3 35 35 H 1.09005 * 109.46671 * 329.99964 * 7 6 5 36 36 H 1.09000 * 109.46679 * 210.00139 * 7 6 5 37 37 H 1.09004 * 109.47760 * 60.00155 * 8 7 6 38 38 H 1.09000 * 109.47585 * 299.99689 * 8 7 6 39 39 H 1.08997 * 109.32692 * 342.24266 * 12 11 9 40 40 H 1.09005 * 109.18498 * 222.69328 * 12 11 9 41 41 H 1.09001 * 109.00324 * 297.68618 * 13 12 11 42 42 H 1.09000 * 108.94712 * 178.86542 * 13 12 11 43 43 H 1.08997 * 109.76815 * 162.05216 * 14 13 12 44 44 H 1.09006 * 109.80641 * 41.30596 * 14 13 12 45 45 H 0.96998 * 119.99910 * 5.15680 * 19 18 16 46 46 H 1.08995 * 109.48053 * 80.34635 * 24 15 14 47 47 H 1.09000 * 109.48016 * 200.38205 * 24 15 14 48 48 H 1.09003 * 108.87915 * 31.42135 * 25 11 9 49 49 H 1.09004 * 108.87092 * 149.96245 * 25 11 9 50 50 H 1.07998 * 119.99751 * 179.72606 * 26 6 5 51 51 H 1.07998 * 120.00288 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1971 5 6 2.7231 3.3759 1.1971 6 6 2.9535 4.0275 -0.0001 7 6 3.4548 5.4487 -0.0001 8 6 4.9847 5.4498 0.0006 9 6 5.4860 6.8710 0.0012 10 8 4.6972 7.7922 0.0016 11 7 6.8110 7.1183 0.0024 12 6 7.3032 8.5162 0.0036 13 6 7.7540 8.8986 1.3510 14 6 8.8674 7.9714 1.8665 15 7 8.2561 6.7540 2.3165 16 6 7.7860 6.6838 3.6008 17 1 7.5061 7.5866 4.1234 18 6 7.6694 5.4525 4.2309 19 7 6.8331 5.3045 5.2364 20 14 8.6992 4.0056 3.6517 21 1 7.9187 3.2008 2.6779 22 1 9.0617 3.1584 4.8162 23 1 9.9359 4.5074 3.0006 24 6 8.1218 5.5625 1.4342 25 6 7.7444 6.0268 0.0025 26 6 2.7187 3.3774 -1.1972 27 6 2.2623 2.0725 -1.1972 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0823 1.5636 2.1324 34 1 2.9027 3.8852 2.1324 35 1 3.0907 5.9624 0.8897 36 1 3.0914 5.9621 -0.8904 37 1 5.3490 4.9361 -0.8891 38 1 5.3481 4.9364 0.8908 39 1 6.4993 9.1820 -0.3104 40 1 8.1365 8.6032 -0.6938 41 1 6.9071 8.8511 2.0354 42 1 8.1293 9.9216 1.3215 43 1 9.3909 8.4490 2.6947 44 1 9.5702 7.7553 1.0618 45 1 6.2446 6.0330 5.4891 46 1 9.0677 5.0218 1.4072 47 1 7.3403 4.9092 1.8222 48 1 7.3052 5.1870 -0.5360 49 1 8.6526 6.3395 -0.5129 50 1 2.8945 3.8880 -2.1325 51 1 2.0822 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989648266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:14 Heat of formation + Delta-G solvation = -18.511475 kcal Electronic energy + Delta-G solvation = -29161.906703 eV Core-core repulsion = 25446.365308 eV Total energy + Delta-G solvation = -3715.541395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.37880 -40.39437 -38.82161 -36.19562 -35.97843 -34.55466 -33.52603 -33.07757 -31.81433 -29.94052 -29.19300 -27.55301 -26.01225 -24.93839 -23.97337 -23.63154 -22.88105 -21.61292 -21.26865 -20.01284 -19.32875 -18.21839 -17.49087 -17.04005 -16.90204 -16.65694 -16.38227 -16.05010 -15.75456 -15.65152 -15.11406 -14.78229 -14.66844 -14.48724 -14.45305 -14.34488 -14.04532 -14.02640 -13.94043 -13.48533 -13.37802 -13.24202 -12.84449 -12.73595 -12.59564 -12.37233 -12.34016 -12.02458 -11.93124 -11.90596 -11.67435 -11.63355 -11.59038 -11.48952 -11.29827 -10.84000 -10.62348 -9.82136 -9.61060 -9.40746 -8.94620 -8.57910 -5.48107 0.39727 0.50302 1.41232 1.55440 1.60710 1.72772 2.14306 2.57469 2.82541 3.05835 3.40423 3.54600 3.84279 3.87470 3.98643 4.03437 4.07067 4.07979 4.14996 4.15922 4.23702 4.32309 4.37079 4.46044 4.51688 4.53905 4.60484 4.60997 4.65286 4.70604 4.73705 4.79144 4.87005 4.92175 4.92891 5.00023 5.04482 5.07463 5.10229 5.17184 5.20310 5.23659 5.39842 5.40253 5.53420 5.70386 5.73763 5.74524 5.78809 6.13390 6.25263 6.47634 6.92899 7.19465 7.70480 8.03252 8.84577 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.003738 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.191046 B = 7487.897790 C = 8952.826078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.090 4.090 4 C -0.127 4.127 5 C -0.133 4.133 6 C -0.094 4.094 7 C -0.054 4.054 8 C -0.125 4.125 9 C 0.512 3.488 10 O -0.592 6.592 11 N -0.590 5.590 12 C 0.127 3.873 13 C -0.155 4.155 14 C 0.158 3.842 15 N -0.611 5.611 16 C -0.329 4.329 17 H 0.016 0.984 18 C -0.069 4.069 19 N -0.957 5.957 20 Si 1.100 2.900 21 H -0.268 1.268 22 H -0.315 1.315 23 H -0.255 1.255 24 C 0.091 3.909 25 C 0.095 3.905 26 C -0.113 4.113 27 C -0.117 4.117 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.011 0.989 42 H 0.084 0.916 43 H 0.034 0.966 44 H 0.079 0.921 45 H 0.242 0.758 46 H 0.060 0.940 47 H 0.045 0.955 48 H 0.105 0.895 49 H 0.108 0.892 50 H 0.143 0.857 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.902 -8.372 -19.789 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.094 4.094 7 C -0.092 4.092 8 C -0.165 4.165 9 C 0.302 3.698 10 O -0.473 6.473 11 N -0.320 5.320 12 C 0.006 3.994 13 C -0.196 4.196 14 C 0.031 3.969 15 N -0.335 5.335 16 C -0.459 4.459 17 H 0.034 0.966 18 C -0.263 4.263 19 N -0.599 5.599 20 Si 0.925 3.075 21 H -0.194 1.194 22 H -0.245 1.245 23 H -0.180 1.180 24 C -0.034 4.034 25 C -0.030 4.030 26 C -0.130 4.130 27 C -0.134 4.134 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.143 0.857 34 H 0.119 0.881 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.144 0.856 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.029 0.971 42 H 0.102 0.898 43 H 0.053 0.947 44 H 0.097 0.903 45 H 0.051 0.949 46 H 0.077 0.923 47 H 0.063 0.937 48 H 0.123 0.877 49 H 0.126 0.874 50 H 0.161 0.839 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.887 -9.410 -19.513 22.009 hybrid contribution -0.788 2.336 1.344 2.808 sum -4.675 -7.075 -18.168 20.050 Atomic orbital electron populations 1.21731 0.94204 1.02431 1.01794 1.20587 0.96538 0.91239 1.03680 1.20197 0.98702 0.97354 0.92788 1.21173 1.00162 0.94386 0.98751 1.21162 1.00395 0.95866 0.97673 1.19847 1.00213 0.95525 0.93840 1.20176 0.93357 0.92831 1.02846 1.21654 0.96752 0.92934 1.05135 1.21090 0.82327 0.92007 0.74422 1.90604 1.56069 1.48020 1.52650 1.47546 1.05341 1.07863 1.71256 1.20675 0.99845 0.81768 0.97140 1.21668 0.99775 1.00949 0.97201 1.20503 0.92825 0.85911 0.97657 1.44012 1.68753 1.11685 1.09073 1.20007 1.40029 0.93642 0.92247 0.96592 1.27418 1.00470 1.02578 0.95808 1.70976 1.22512 1.33513 1.32931 0.83470 0.76465 0.73040 0.74566 1.19446 1.24463 1.17952 1.22856 0.99399 0.89574 0.91604 1.21974 0.94628 0.90364 0.96034 1.21251 0.99216 0.95214 0.97365 1.21310 0.99286 0.94528 0.98314 0.90961 0.93603 0.92458 0.89466 0.90947 0.85737 0.88091 0.93570 0.89759 0.85580 0.90377 0.91360 0.87407 0.97052 0.89752 0.94718 0.90314 0.94892 0.92272 0.93682 0.87703 0.87353 0.83939 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.89 71.98 0.71 -1.29 16 2 C -0.08 -1.29 6.06 29.85 0.18 -1.11 16 3 C -0.09 -1.91 5.13 -19.87 -0.10 -2.02 16 4 C -0.13 -3.29 9.70 22.27 0.22 -3.07 16 5 C -0.13 -4.01 9.70 22.27 0.22 -3.80 16 6 C -0.09 -2.60 5.13 -19.86 -0.10 -2.71 16 7 C -0.05 -1.65 4.63 29.85 0.14 -1.52 16 8 C -0.13 -3.82 4.24 29.85 0.13 -3.69 16 9 C 0.51 18.59 7.67 87.66 0.67 19.26 16 10 O -0.59 -25.68 15.42 -3.03 -0.05 -25.73 16 11 N -0.59 -18.97 2.46 -830.60 -2.04 -21.01 16 12 C 0.13 3.79 5.70 84.23 0.48 4.27 16 13 C -0.16 -5.45 5.64 29.04 0.16 -5.28 16 14 C 0.16 5.84 5.63 87.21 0.49 6.33 16 15 N -0.61 -27.61 2.33 -697.50 -1.62 -29.24 16 16 C -0.33 -18.92 9.55 84.03 0.80 -18.12 16 17 H 0.02 1.06 8.06 -2.91 -0.02 1.03 16 18 C -0.07 -4.06 5.14 84.86 0.44 -3.63 16 19 N -0.96 -62.18 13.70 21.65 0.30 -61.89 16 20 Si 1.10 51.27 24.43 68.60 1.68 52.95 16 21 H -0.27 -11.26 6.75 99.48 0.67 -10.59 16 22 H -0.32 -15.43 7.11 99.48 0.71 -14.72 16 23 H -0.25 -10.49 6.41 99.48 0.64 -9.86 16 24 C 0.09 3.39 4.54 86.67 0.39 3.78 16 25 C 0.10 2.56 5.06 87.66 0.44 3.00 16 26 C -0.11 -2.45 9.70 22.27 0.22 -2.24 16 27 C -0.12 -2.26 9.70 22.27 0.22 -2.04 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 1.07 8.09 -2.38 -0.02 1.05 16 32 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 33 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.10 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.05 1.68 8.04 -2.38 -0.02 1.66 16 36 H 0.08 2.38 8.04 -2.39 -0.02 2.36 16 37 H 0.13 2.83 7.37 -2.38 -0.02 2.81 16 38 H 0.08 2.76 7.35 -2.39 -0.02 2.74 16 39 H 0.07 2.21 7.12 -2.39 -0.02 2.20 16 40 H 0.11 2.29 8.05 -2.38 -0.02 2.27 16 41 H 0.01 0.50 7.91 -2.39 -0.02 0.48 16 42 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.03 1.38 8.02 -2.39 -0.02 1.36 16 44 H 0.08 2.28 7.59 -2.38 -0.02 2.26 16 45 H 0.24 16.24 8.73 -92.71 -0.81 15.43 16 46 H 0.06 2.03 5.81 -2.39 -0.01 2.01 16 47 H 0.04 1.93 4.75 -2.39 -0.01 1.92 16 48 H 0.10 2.20 6.38 -2.39 -0.02 2.19 16 49 H 0.11 2.17 7.72 -2.38 -0.02 2.15 16 50 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 51 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -78.32 393.33 4.70 -73.62 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.75 Total: 25.16 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 5.70 Total: -13.86 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -3.37 Total: -112.14 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.73 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 1.68 Total: 52.95 kcal Total: -78.32 4.70 -73.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989648266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.104 kcal (2) G-P(sol) polarization free energy of solvation -78.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds