Wall clock time and date at job start Tue Mar 31 2020 16:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.46938 * 2 1 4 4 C 1.38241 * 120.00057 * 89.99938 * 3 2 1 5 5 C 1.38233 * 120.00301 * 179.97438 * 4 3 2 6 6 C 1.38241 * 119.99528 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99664 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46979 * 90.00066 * 7 6 5 9 9 C 1.50701 * 109.46979 * 180.02562 * 8 7 6 10 10 O 1.21288 * 120.00015 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99876 * 180.02562 * 9 8 7 12 12 C 1.47420 * 125.65051 * 359.95496 * 11 9 8 13 13 C 1.54907 * 104.83524 * 204.16394 * 12 11 9 14 14 H 1.09001 * 111.00336 * 81.06484 * 13 12 11 15 15 N 1.46494 * 111.00633 * 204.87752 * 13 12 11 16 16 C 1.36940 * 120.00110 * 273.54862 * 15 13 12 17 17 H 1.07995 * 120.00057 * 359.97438 * 16 15 13 18 18 C 1.38811 * 119.99512 * 179.97438 * 16 15 13 19 19 N 1.31629 * 119.99627 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00718 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46917 * 89.99916 * 20 18 16 22 22 H 1.48497 * 109.47417 * 209.99812 * 20 18 16 23 23 H 1.48497 * 109.46715 * 330.00441 * 20 18 16 24 24 C 1.55155 * 101.58383 * 322.99460 * 13 12 11 25 25 C 1.47026 * 125.64519 * 180.02562 * 11 9 8 26 26 H 1.08998 * 109.88379 * 59.48616 * 25 11 9 27 27 C 1.53003 * 109.88297 * 298.31877 * 25 11 9 28 28 C 1.38233 * 120.00387 * 0.27936 * 6 5 4 29 29 C 1.38227 * 120.00179 * 269.98159 * 3 2 1 30 30 H 1.09007 * 109.46814 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47466 * 299.99974 * 1 2 3 32 32 H 1.08995 * 109.47433 * 60.00129 * 1 2 3 33 33 H 1.08999 * 109.47466 * 240.00026 * 2 1 3 34 34 H 1.09003 * 109.47271 * 119.99584 * 2 1 3 35 35 H 1.07999 * 119.99802 * 359.97438 * 4 3 2 36 36 H 1.07991 * 120.00165 * 179.97438 * 5 4 3 37 37 H 1.09007 * 109.47029 * 329.99960 * 7 6 5 38 38 H 1.08998 * 109.47131 * 210.00566 * 7 6 5 39 39 H 1.08994 * 109.47056 * 60.00025 * 8 7 6 40 40 H 1.09001 * 109.47033 * 299.99725 * 8 7 6 41 41 H 1.08997 * 110.36858 * 323.00625 * 12 11 9 42 42 H 1.08999 * 110.36307 * 85.32839 * 12 11 9 43 43 H 0.97001 * 119.99882 * 93.54554 * 15 13 12 44 44 H 0.96993 * 119.99662 * 180.02562 * 19 18 16 45 45 H 1.08998 * 110.71769 * 277.13840 * 24 13 12 46 46 H 1.08991 * 110.72382 * 153.86236 * 24 13 12 47 47 H 1.08994 * 109.46761 * 61.45852 * 27 25 11 48 48 H 1.08996 * 109.46781 * 181.45694 * 27 25 11 49 49 H 1.09001 * 109.47129 * 301.45469 * 27 25 11 50 50 H 1.08001 * 120.00035 * 179.72826 * 28 6 5 51 51 H 1.08001 * 119.99924 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0726 1.1972 5 6 2.7239 3.3757 1.1973 6 6 2.9553 4.0269 0.0000 7 6 3.4587 5.4474 0.0001 8 6 4.9886 5.4462 0.0007 9 6 5.4920 6.8667 0.0014 10 8 4.7046 7.7891 0.0009 11 7 6.8173 7.1119 0.0015 12 6 7.8802 6.0904 0.0020 13 6 9.1128 6.8007 0.6149 14 1 9.0538 6.8160 1.7032 15 7 10.3578 6.1711 0.1682 16 6 10.8628 5.0946 0.8474 17 1 10.3434 4.7100 1.7127 18 6 12.0422 4.4977 0.4236 19 7 12.5274 3.4627 1.0762 20 14 12.9402 5.1624 -1.0735 21 1 13.9109 6.2023 -0.6471 22 1 13.6648 4.0556 -1.7479 23 1 11.9586 5.7580 -2.0153 24 6 8.9708 8.2309 0.0303 25 6 7.4424 8.4427 0.0027 26 1 7.1290 8.9987 0.8862 27 6 7.0457 9.2050 -1.2632 28 6 2.7199 3.3771 -1.1971 29 6 2.2630 2.0724 -1.1971 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0822 1.5636 2.1325 36 1 2.9034 3.8849 2.1325 37 1 3.0953 5.9616 0.8899 38 1 3.0960 5.9614 -0.8901 39 1 5.3519 4.9320 -0.8890 40 1 5.3512 4.9323 0.8910 41 1 7.5880 5.2393 0.6170 42 1 8.0961 5.7672 -1.0164 43 1 10.8244 6.5167 -0.6088 44 1 13.3517 3.0459 0.7803 45 1 9.3853 8.2787 -0.9767 46 1 9.4496 8.9627 0.6807 47 1 5.9643 9.3394 -1.2825 48 1 7.5331 10.1799 -1.2679 49 1 7.3573 8.6388 -2.1410 50 1 2.8965 3.8875 -2.1324 51 1 2.0837 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989785217.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:21 Heat of formation + Delta-G solvation = -18.373509 kcal Electronic energy + Delta-G solvation = -27659.916044 eV Core-core repulsion = 23944.380632 eV Total energy + Delta-G solvation = -3715.535412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.15587 -39.57331 -37.60081 -35.27163 -34.36076 -32.79136 -31.67383 -31.45277 -31.04384 -29.02583 -28.74513 -25.58273 -25.22864 -23.67939 -22.86036 -22.83879 -21.30653 -20.51960 -20.37626 -18.62290 -17.76900 -17.03230 -16.33414 -16.06582 -15.90080 -15.30027 -15.05879 -14.79510 -14.30598 -13.96438 -13.95336 -13.74390 -13.55971 -13.42640 -13.25182 -13.18219 -13.03882 -12.67558 -12.46862 -12.35236 -12.23300 -12.05349 -11.81505 -11.63949 -11.57118 -11.41865 -11.17115 -11.14457 -10.94214 -10.88962 -10.84892 -10.70101 -10.42306 -10.11232 -9.70520 -9.64616 -9.08769 -9.03175 -8.61192 -8.41247 -7.43726 -5.88323 -3.26676 1.19327 1.29338 2.80603 3.15355 3.29690 3.32565 3.38882 3.62814 4.45069 4.48794 4.57747 4.60550 4.83048 4.85705 4.88789 4.97749 5.03828 5.08309 5.08572 5.13625 5.21659 5.27571 5.34263 5.37881 5.39193 5.47008 5.52371 5.59541 5.61770 5.64335 5.68299 5.70996 5.77425 5.84996 5.89743 5.94675 5.98689 6.00317 6.05574 6.10057 6.22048 6.30827 6.32330 6.36123 6.48217 6.54935 6.59147 6.69690 6.89756 7.75999 7.85769 8.30156 8.34710 9.06725 9.78865 9.96836 11.29277 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.002698 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.756749 B =10376.401461 C =12461.396632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.089 4.089 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.084 4.084 7 C -0.062 4.062 8 C -0.131 4.131 9 C 0.528 3.472 10 O -0.553 6.553 11 N -0.611 5.611 12 C 0.074 3.926 13 C 0.177 3.823 14 H 0.073 0.927 15 N -0.737 5.737 16 C -0.253 4.253 17 H 0.092 0.908 18 C 0.010 3.990 19 N -0.929 5.929 20 Si 0.884 3.116 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.276 1.276 24 C -0.140 4.140 25 C 0.138 3.862 26 H 0.073 0.927 27 C -0.160 4.160 28 C -0.113 4.113 29 C -0.117 4.117 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.364 0.636 44 H 0.261 0.739 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.066 0.934 48 H 0.061 0.939 49 H 0.054 0.946 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.267 0.324 -3.563 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.084 4.084 7 C -0.100 4.100 8 C -0.171 4.171 9 C 0.317 3.683 10 O -0.432 6.432 11 N -0.345 5.345 12 C -0.052 4.052 13 C 0.066 3.934 14 H 0.091 0.909 15 N -0.378 5.378 16 C -0.383 4.383 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.575 5.575 20 Si 0.714 3.286 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.178 4.178 25 C 0.035 3.965 26 H 0.091 0.909 27 C -0.218 4.218 28 C -0.131 4.131 29 C -0.135 4.135 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.198 0.802 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.674 0.583 -3.389 21.946 hybrid contribution 0.915 0.193 -1.124 1.463 sum -20.759 0.776 -4.513 21.258 Atomic orbital electron populations 1.21745 0.94836 1.01592 1.02170 1.20542 0.96068 0.92803 1.02882 1.19881 0.99520 0.96199 0.93275 1.21009 1.00013 0.94875 0.97485 1.21069 0.99412 0.94811 0.97709 1.19910 0.99139 0.96125 0.93219 1.20320 0.93383 0.92080 1.04239 1.21627 0.96342 0.94169 1.04925 1.20317 0.80666 0.91428 0.75868 1.90651 1.54733 1.46594 1.51261 1.48664 1.05132 1.08454 1.72232 1.23406 0.88320 0.91609 1.01819 1.21255 0.85425 0.89239 0.97527 0.90913 1.42662 1.24008 1.36842 1.34310 1.19056 1.05240 1.04603 1.09394 0.88989 1.24688 0.97768 0.97568 0.98659 1.69700 1.22638 1.23684 1.41508 0.86570 0.80066 0.78332 0.83646 1.20928 1.21631 1.20260 1.23037 0.93428 0.99024 1.02358 1.21482 0.92562 0.84112 0.98393 0.90893 1.22123 1.02662 0.99794 0.97251 1.21055 0.99570 0.94801 0.97662 1.20996 1.00141 0.94856 0.97464 0.92481 0.92594 0.92618 0.91082 0.91039 0.86226 0.85999 0.90291 0.90376 0.88876 0.88701 0.90762 0.91350 0.80221 0.92870 0.90625 0.90058 0.91484 0.91971 0.92683 0.86100 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.09 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.09 -0.85 5.13 -104.62 -0.54 -1.39 16 4 C -0.12 -1.15 9.70 -39.58 -0.38 -1.53 16 5 C -0.11 -1.18 9.70 -39.58 -0.38 -1.56 16 6 C -0.08 -0.91 5.13 -104.62 -0.54 -1.45 16 7 C -0.06 -0.71 4.63 -27.88 -0.13 -0.84 16 8 C -0.13 -1.59 4.69 -27.88 -0.13 -1.72 16 9 C 0.53 7.86 7.64 -10.99 -0.08 7.78 16 10 O -0.55 -9.53 15.02 5.55 0.08 -9.45 16 11 N -0.61 -9.09 3.06 -163.02 -0.50 -9.59 16 12 C 0.07 1.18 6.39 -2.53 -0.02 1.17 16 13 C 0.18 3.10 3.68 -65.79 -0.24 2.86 16 14 H 0.07 1.32 8.13 -51.93 -0.42 0.90 16 15 N -0.74 -15.99 5.08 -51.36 -0.26 -16.26 16 16 C -0.25 -6.68 10.47 -15.06 -0.16 -6.84 16 17 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 18 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 19 N -0.93 -28.04 13.97 55.49 0.78 -27.26 16 20 Si 0.88 21.05 27.73 -169.99 -4.71 16.33 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.15 6.52 56.52 0.37 -5.78 16 24 C -0.14 -2.00 6.10 -24.89 -0.15 -2.15 16 25 C 0.14 1.93 3.46 -66.95 -0.23 1.70 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 C -0.16 -2.07 9.10 37.16 0.34 -1.73 16 28 C -0.11 -1.17 9.70 -39.58 -0.38 -1.56 16 29 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 38 H 0.08 0.90 8.04 -51.93 -0.42 0.49 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.12 7.85 -51.93 -0.41 0.71 16 41 H 0.07 1.18 7.48 -51.93 -0.39 0.79 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.36 7.80 5.58 -40.82 -0.23 7.57 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.08 1.07 7.71 -51.93 -0.40 0.67 16 46 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.07 0.96 6.88 -51.93 -0.36 0.60 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 51 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 410.05 15.07 6.18 6.18 Total: -1.00 -30.90 410.05 -10.72 -41.62 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -8.97 Total: 8.46 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -3.31 Total: -10.03 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.01 Total: -53.10 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.71 Total: 16.33 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.90 -10.72 -41.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989785217.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.243 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds