Wall clock time and date at job start Tue Mar 31 2020 16:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.46938 * 2 1 4 4 C 1.38241 * 120.00057 * 89.99938 * 3 2 1 5 5 C 1.38233 * 120.00301 * 179.97438 * 4 3 2 6 6 C 1.38241 * 119.99528 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99664 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46979 * 90.00066 * 7 6 5 9 9 C 1.50701 * 109.46979 * 180.02562 * 8 7 6 10 10 O 1.21288 * 120.00015 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99876 * 180.02562 * 9 8 7 12 12 C 1.47420 * 125.65051 * 359.95496 * 11 9 8 13 13 C 1.54907 * 104.83524 * 204.16394 * 12 11 9 14 14 H 1.09001 * 111.00336 * 81.06484 * 13 12 11 15 15 N 1.46494 * 111.00633 * 204.87752 * 13 12 11 16 16 C 1.36940 * 120.00110 * 273.54862 * 15 13 12 17 17 H 1.07995 * 120.00057 * 359.97438 * 16 15 13 18 18 C 1.38811 * 119.99512 * 179.97438 * 16 15 13 19 19 N 1.31629 * 119.99627 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00718 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46917 * 89.99916 * 20 18 16 22 22 H 1.48497 * 109.47417 * 209.99812 * 20 18 16 23 23 H 1.48497 * 109.46715 * 330.00441 * 20 18 16 24 24 C 1.55155 * 101.58383 * 322.99460 * 13 12 11 25 25 C 1.47026 * 125.64519 * 180.02562 * 11 9 8 26 26 H 1.08998 * 109.88379 * 59.48616 * 25 11 9 27 27 C 1.53003 * 109.88297 * 298.31877 * 25 11 9 28 28 C 1.38233 * 120.00387 * 0.27936 * 6 5 4 29 29 C 1.38227 * 120.00179 * 269.98159 * 3 2 1 30 30 H 1.09007 * 109.46814 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47466 * 299.99974 * 1 2 3 32 32 H 1.08995 * 109.47433 * 60.00129 * 1 2 3 33 33 H 1.08999 * 109.47466 * 240.00026 * 2 1 3 34 34 H 1.09003 * 109.47271 * 119.99584 * 2 1 3 35 35 H 1.07999 * 119.99802 * 359.97438 * 4 3 2 36 36 H 1.07991 * 120.00165 * 179.97438 * 5 4 3 37 37 H 1.09007 * 109.47029 * 329.99960 * 7 6 5 38 38 H 1.08998 * 109.47131 * 210.00566 * 7 6 5 39 39 H 1.08994 * 109.47056 * 60.00025 * 8 7 6 40 40 H 1.09001 * 109.47033 * 299.99725 * 8 7 6 41 41 H 1.08997 * 110.36858 * 323.00625 * 12 11 9 42 42 H 1.08999 * 110.36307 * 85.32839 * 12 11 9 43 43 H 0.97001 * 119.99882 * 93.54554 * 15 13 12 44 44 H 0.96993 * 119.99662 * 180.02562 * 19 18 16 45 45 H 1.08998 * 110.71769 * 277.13840 * 24 13 12 46 46 H 1.08991 * 110.72382 * 153.86236 * 24 13 12 47 47 H 1.08994 * 109.46761 * 61.45852 * 27 25 11 48 48 H 1.08996 * 109.46781 * 181.45694 * 27 25 11 49 49 H 1.09001 * 109.47129 * 301.45469 * 27 25 11 50 50 H 1.08001 * 120.00035 * 179.72826 * 28 6 5 51 51 H 1.08001 * 119.99924 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0726 1.1972 5 6 2.7239 3.3757 1.1973 6 6 2.9553 4.0269 0.0000 7 6 3.4587 5.4474 0.0001 8 6 4.9886 5.4462 0.0007 9 6 5.4920 6.8667 0.0014 10 8 4.7046 7.7891 0.0009 11 7 6.8173 7.1119 0.0015 12 6 7.8802 6.0904 0.0020 13 6 9.1128 6.8007 0.6149 14 1 9.0538 6.8160 1.7032 15 7 10.3578 6.1711 0.1682 16 6 10.8628 5.0946 0.8474 17 1 10.3434 4.7100 1.7127 18 6 12.0422 4.4977 0.4236 19 7 12.5274 3.4627 1.0762 20 14 12.9402 5.1624 -1.0735 21 1 13.9109 6.2023 -0.6471 22 1 13.6648 4.0556 -1.7479 23 1 11.9586 5.7580 -2.0153 24 6 8.9708 8.2309 0.0303 25 6 7.4424 8.4427 0.0027 26 1 7.1290 8.9987 0.8862 27 6 7.0457 9.2050 -1.2632 28 6 2.7199 3.3771 -1.1971 29 6 2.2630 2.0724 -1.1971 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0822 1.5636 2.1325 36 1 2.9034 3.8849 2.1325 37 1 3.0953 5.9616 0.8899 38 1 3.0960 5.9614 -0.8901 39 1 5.3519 4.9320 -0.8890 40 1 5.3512 4.9323 0.8910 41 1 7.5880 5.2393 0.6170 42 1 8.0961 5.7672 -1.0164 43 1 10.8244 6.5167 -0.6088 44 1 13.3517 3.0459 0.7803 45 1 9.3853 8.2787 -0.9767 46 1 9.4496 8.9627 0.6807 47 1 5.9643 9.3394 -1.2825 48 1 7.5331 10.1799 -1.2679 49 1 7.3573 8.6388 -2.1410 50 1 2.8965 3.8875 -2.1324 51 1 2.0837 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989785217.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:20 Heat of formation + Delta-G solvation = -33.559189 kcal Electronic energy + Delta-G solvation = -27660.574544 eV Core-core repulsion = 23944.380632 eV Total energy + Delta-G solvation = -3716.193913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.32630 -40.39854 -38.89068 -36.19387 -35.95515 -33.71997 -33.49350 -32.54618 -31.80057 -30.51943 -29.63253 -26.76452 -26.17457 -25.39464 -23.70052 -23.62058 -22.44839 -21.89418 -21.24042 -19.91614 -19.58531 -18.20642 -17.53740 -16.90456 -16.83081 -16.52841 -16.23819 -15.90458 -15.78467 -15.18025 -14.90772 -14.70926 -14.63649 -14.44098 -14.37824 -14.24169 -14.04723 -14.01697 -13.67549 -13.57207 -13.24018 -13.15041 -12.94092 -12.90610 -12.65214 -12.43858 -12.33007 -12.30983 -12.08702 -11.93240 -11.87536 -11.80642 -11.65942 -11.61967 -11.52428 -11.04964 -10.81581 -9.80551 -9.69538 -9.39653 -9.33499 -8.00870 -5.36640 0.41102 0.51952 1.41582 1.44519 1.51505 1.60927 1.98265 2.50374 2.83723 3.28015 3.29739 3.65628 3.77035 3.86968 3.87627 3.92781 4.06804 4.08361 4.11368 4.16644 4.24135 4.30041 4.35245 4.41944 4.46273 4.51881 4.58545 4.61788 4.64097 4.72180 4.72795 4.80648 4.83433 4.92774 5.06200 5.06648 5.07193 5.09451 5.10292 5.21412 5.24009 5.25083 5.35233 5.38767 5.44081 5.54303 5.74063 5.75212 5.78556 6.14402 6.22488 6.53630 7.07440 7.14737 7.81314 8.00726 9.20002 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.002698 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.756749 B =10376.401461 C =12461.396632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.094 4.094 4 C -0.126 4.126 5 C -0.124 4.124 6 C -0.096 4.096 7 C -0.052 4.052 8 C -0.125 4.125 9 C 0.526 3.474 10 O -0.576 6.576 11 N -0.611 5.611 12 C 0.086 3.914 13 C 0.167 3.833 14 H 0.063 0.937 15 N -0.737 5.737 16 C -0.232 4.232 17 H 0.061 0.939 18 C -0.060 4.060 19 N -0.982 5.982 20 Si 0.952 3.048 21 H -0.279 1.279 22 H -0.300 1.300 23 H -0.247 1.247 24 C -0.126 4.126 25 C 0.134 3.866 26 H 0.074 0.926 27 C -0.152 4.152 28 C -0.122 4.122 29 C -0.125 4.125 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.370 0.630 44 H 0.258 0.742 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.050 0.950 48 H 0.084 0.916 49 H 0.054 0.946 50 H 0.130 0.870 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.971 1.184 -5.038 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.094 4.094 4 C -0.144 4.144 5 C -0.142 4.142 6 C -0.096 4.096 7 C -0.090 4.090 8 C -0.164 4.164 9 C 0.317 3.683 10 O -0.457 6.457 11 N -0.344 5.344 12 C -0.039 4.039 13 C 0.057 3.943 14 H 0.081 0.919 15 N -0.380 5.380 16 C -0.363 4.363 17 H 0.079 0.921 18 C -0.252 4.252 19 N -0.632 5.632 20 Si 0.779 3.221 21 H -0.205 1.205 22 H -0.228 1.228 23 H -0.172 1.172 24 C -0.164 4.164 25 C 0.031 3.969 26 H 0.092 0.908 27 C -0.210 4.210 28 C -0.140 4.140 29 C -0.143 4.143 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.204 0.796 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.116 0.884 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.073 0.927 50 H 0.148 0.852 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.431 1.494 -4.875 23.003 hybrid contribution 1.022 -0.071 -0.570 1.173 sum -21.408 1.422 -5.446 22.136 Atomic orbital electron populations 1.21724 0.94107 1.02368 1.01878 1.20589 0.96634 0.91560 1.03478 1.20197 0.98874 0.97205 0.93129 1.21257 0.99907 0.94811 0.98402 1.21252 0.99645 0.95321 0.97946 1.19909 1.00087 0.95895 0.93735 1.20190 0.92646 0.92477 1.03693 1.21623 0.96952 0.92484 1.05366 1.20725 0.80347 0.92162 0.75085 1.90642 1.55140 1.47574 1.52345 1.48691 1.05035 1.08592 1.72132 1.23087 0.87927 0.91512 1.01401 1.21407 0.84236 0.91366 0.97278 0.91924 1.42575 1.25410 1.35869 1.34149 1.18998 1.04354 1.04879 1.08042 0.92128 1.25482 0.99175 0.98275 1.02246 1.69882 1.23403 1.25941 1.43958 0.85462 0.79046 0.77339 0.80225 1.20521 1.22757 1.17182 1.22966 0.93719 0.96797 1.02915 1.21601 0.92252 0.83829 0.99206 0.90777 1.22047 1.01766 1.00780 0.96391 1.21250 0.99619 0.95269 0.97893 1.21259 0.99896 0.94788 0.98363 0.91183 0.92942 0.92857 0.90419 0.90534 0.84827 0.85382 0.90940 0.90782 0.88150 0.88349 0.91109 0.91491 0.79617 0.93361 0.89703 0.88404 0.93058 0.89696 0.92705 0.85189 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.89 71.98 0.71 -0.97 16 2 C -0.09 -1.16 6.06 29.85 0.18 -0.98 16 3 C -0.09 -1.71 5.13 -19.87 -0.10 -1.81 16 4 C -0.13 -2.39 9.70 22.27 0.22 -2.17 16 5 C -0.12 -2.55 9.70 22.27 0.22 -2.33 16 6 C -0.10 -2.06 5.13 -19.86 -0.10 -2.16 16 7 C -0.05 -1.17 4.63 29.85 0.14 -1.03 16 8 C -0.12 -2.95 4.69 29.85 0.14 -2.81 16 9 C 0.53 15.22 7.64 87.66 0.67 15.89 16 10 O -0.58 -19.47 15.02 -3.05 -0.05 -19.52 16 11 N -0.61 -17.34 3.06 -788.05 -2.42 -19.75 16 12 C 0.09 2.66 6.39 86.86 0.55 3.21 16 13 C 0.17 5.61 3.68 46.38 0.17 5.78 16 14 H 0.06 2.24 8.13 -2.39 -0.02 2.22 16 15 N -0.74 -30.91 5.08 -316.39 -1.61 -32.52 16 16 C -0.23 -12.26 10.47 84.03 0.88 -11.38 16 17 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 18 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 19 N -0.98 -60.69 13.97 21.65 0.30 -60.38 16 20 Si 0.95 42.93 27.73 68.60 1.90 44.83 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.25 -9.84 6.52 99.48 0.65 -9.19 16 24 C -0.13 -3.24 6.10 31.78 0.19 -3.05 16 25 C 0.13 3.47 3.46 45.34 0.16 3.63 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 C -0.15 -3.55 9.10 71.98 0.66 -2.89 16 28 C -0.12 -2.45 9.70 22.27 0.22 -2.23 16 29 C -0.13 -2.31 9.70 22.27 0.22 -2.10 16 30 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 34 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 35 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.13 2.36 8.06 -2.92 -0.02 2.33 16 37 H 0.07 1.69 8.04 -2.38 -0.02 1.67 16 38 H 0.07 1.69 8.04 -2.39 -0.02 1.67 16 39 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.10 2.27 7.85 -2.39 -0.02 2.25 16 41 H 0.07 2.22 7.48 -2.39 -0.02 2.20 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.37 14.77 5.58 -92.71 -0.52 14.26 16 44 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.08 2.09 7.71 -2.39 -0.02 2.07 16 46 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.05 1.38 6.88 -2.39 -0.02 1.36 16 48 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 51 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -66.56 410.05 4.03 -62.53 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: 0.31 Total: 35.10 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 5.58 Total: -10.29 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -3.72 Total: -112.65 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.52 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.90 Total: 44.83 kcal Total: -66.56 4.03 -62.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989785217.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.973 kcal (2) G-P(sol) polarization free energy of solvation -66.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds