Wall clock time and date at job start Tue Mar 31 2020 16:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38231 * 119.99884 * 269.72543 * 3 2 1 5 5 C 1.38232 * 119.99941 * 179.77036 * 4 3 2 6 6 C 1.38241 * 119.99990 * 0.48356 * 5 4 3 7 7 C 1.50696 * 120.00172 * 179.77042 * 6 5 4 8 8 C 1.53002 * 109.46919 * 270.02062 * 7 6 5 9 9 C 1.50706 * 109.46925 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00072 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99766 * 180.02562 * 9 8 7 12 12 C 1.47423 * 125.65179 * 359.68993 * 11 9 8 13 13 C 1.55130 * 104.72215 * 155.81688 * 12 11 9 14 14 H 1.08994 * 111.22688 * 279.17633 * 13 12 11 15 15 N 1.46499 * 110.90151 * 155.27553 * 13 12 11 16 16 C 1.36939 * 120.00036 * 92.97906 * 15 13 12 17 17 H 1.08000 * 119.99881 * 359.97438 * 16 15 13 18 18 C 1.38806 * 120.00297 * 179.97438 * 16 15 13 19 19 N 1.31617 * 120.00471 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99800 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47531 * 89.99962 * 20 18 16 22 22 H 1.48502 * 109.47071 * 210.00283 * 20 18 16 23 23 H 1.48504 * 109.47129 * 329.99520 * 20 18 16 24 24 C 1.55157 * 101.48310 * 37.29830 * 13 12 11 25 25 C 1.47022 * 125.64673 * 179.97438 * 11 9 8 26 26 H 1.09000 * 109.88414 * 61.60316 * 25 11 9 27 27 C 1.53003 * 109.88140 * 300.59520 * 25 11 9 28 28 C 1.38238 * 119.99720 * 359.79405 * 6 5 4 29 29 C 1.38234 * 120.00071 * 359.95221 * 28 6 5 30 30 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 31 31 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 32 32 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 34 34 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 35 35 H 1.07997 * 120.00101 * 0.02562 * 4 3 2 36 36 H 1.08002 * 120.00590 * 180.25684 * 5 4 3 37 37 H 1.09000 * 109.47165 * 30.02197 * 7 6 5 38 38 H 1.09004 * 109.47237 * 150.02351 * 7 6 5 39 39 H 1.08992 * 109.47461 * 300.00320 * 8 7 6 40 40 H 1.09001 * 109.47185 * 60.00553 * 8 7 6 41 41 H 1.09002 * 110.36496 * 274.74993 * 12 11 9 42 42 H 1.09010 * 110.36248 * 37.07129 * 12 11 9 43 43 H 0.96998 * 120.00540 * 272.97567 * 15 13 12 44 44 H 0.97000 * 120.00792 * 179.97438 * 19 18 16 45 45 H 1.08997 * 110.71564 * 205.96767 * 24 13 12 46 46 H 1.09004 * 110.87264 * 82.76416 * 24 13 12 47 47 H 1.09000 * 109.46944 * 61.45671 * 27 25 11 48 48 H 1.09005 * 109.46946 * 181.45101 * 27 25 11 49 49 H 1.08997 * 109.46940 * 301.44828 * 27 25 11 50 50 H 1.08003 * 119.99825 * 179.97438 * 28 6 5 51 51 H 1.07997 * 119.99984 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1972 6 6 2.9543 4.0273 0.0000 7 6 3.4565 5.4481 0.0000 8 6 4.9866 5.4481 0.0000 9 6 5.4889 6.8690 0.0007 10 8 4.7008 7.7908 0.0015 11 7 6.8140 7.1153 0.0002 12 6 7.8776 6.0945 0.0057 13 6 9.1101 6.8062 -0.6116 14 1 9.0526 6.8220 -1.6999 15 7 10.3553 6.1779 -0.1634 16 6 10.9312 5.1876 -0.9137 17 1 10.4673 4.8696 -1.8357 18 6 12.1113 4.5926 -0.4894 19 7 12.6646 3.6405 -1.2102 20 14 12.9134 5.1422 1.1056 21 1 12.3889 4.3265 2.2303 22 1 14.3843 4.9624 1.0076 23 1 12.6049 6.5746 1.3470 24 6 8.9665 8.2359 -0.0262 25 6 7.4380 8.4465 0.0002 26 1 7.1543 8.9889 0.9021 27 6 6.9954 9.2286 -1.2380 28 6 2.7240 3.3756 1.1972 29 6 2.2627 2.0725 1.1972 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0919 1.5601 -2.1324 36 1 2.9046 3.8846 -2.1324 37 1 3.0932 5.9620 -0.8899 38 1 3.0932 5.9620 0.8901 39 1 5.3499 4.9343 0.8899 40 1 5.3499 4.9344 -0.8900 41 1 8.0922 5.7757 1.0257 42 1 7.5871 5.2407 -0.6065 43 1 10.7719 6.4632 0.6648 44 1 13.4895 3.2249 -0.9139 45 1 9.4453 8.9685 -0.6760 46 1 9.3807 8.2867 0.9808 47 1 5.9139 9.3622 -1.2160 48 1 7.4818 10.2041 -1.2446 49 1 7.2754 8.6770 -2.1354 50 1 2.9040 3.8847 2.1325 51 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989785218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:25 Heat of formation + Delta-G solvation = -18.130875 kcal Electronic energy + Delta-G solvation = -27661.016048 eV Core-core repulsion = 23945.491157 eV Total energy + Delta-G solvation = -3715.524891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.17122 -39.58477 -37.61278 -35.27863 -34.34758 -32.80185 -31.68761 -31.41237 -31.05296 -28.95826 -28.72817 -25.57944 -25.26332 -23.69347 -22.86876 -22.84830 -21.47037 -20.57229 -20.17216 -18.72526 -17.79837 -17.05042 -16.19350 -16.07223 -15.65647 -15.47534 -15.13275 -14.82785 -14.22303 -14.00321 -13.92145 -13.73853 -13.57465 -13.45350 -13.27211 -13.13459 -12.98202 -12.79606 -12.54281 -12.41197 -12.10937 -11.95536 -11.83591 -11.63682 -11.57075 -11.54209 -11.15083 -11.11504 -10.94966 -10.89266 -10.84670 -10.69009 -10.39775 -10.09443 -9.71273 -9.64962 -9.08525 -9.04096 -8.62028 -8.42471 -7.44028 -5.88492 -3.26872 1.18406 1.28465 2.79859 3.14654 3.29814 3.32411 3.38777 3.61936 4.44415 4.48558 4.57148 4.59724 4.83690 4.84874 4.87926 5.01157 5.03378 5.07366 5.07876 5.14557 5.22101 5.26930 5.30050 5.37034 5.38389 5.47182 5.51795 5.57533 5.61091 5.67469 5.73591 5.74923 5.77322 5.84224 5.86301 5.93834 5.98995 6.03047 6.08896 6.09757 6.16650 6.29970 6.32910 6.42606 6.47362 6.54082 6.57412 6.70532 6.88873 7.75392 7.85568 8.29806 8.34158 9.06422 9.78568 9.96501 11.29064 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.002679 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.268941 B =10448.494622 C =12499.543434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.089 4.089 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.084 4.084 7 C -0.063 4.063 8 C -0.131 4.131 9 C 0.528 3.472 10 O -0.553 6.553 11 N -0.611 5.611 12 C 0.072 3.928 13 C 0.179 3.821 14 H 0.077 0.923 15 N -0.736 5.736 16 C -0.254 4.254 17 H 0.092 0.908 18 C 0.010 3.990 19 N -0.929 5.929 20 Si 0.883 3.117 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.276 1.276 24 C -0.142 4.142 25 C 0.138 3.862 26 H 0.069 0.931 27 C -0.161 4.161 28 C -0.113 4.113 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.364 0.636 44 H 0.261 0.739 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.061 0.939 49 H 0.057 0.943 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.678 -0.232 3.237 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.084 4.084 7 C -0.100 4.100 8 C -0.171 4.171 9 C 0.317 3.683 10 O -0.432 6.432 11 N -0.345 5.345 12 C -0.053 4.053 13 C 0.067 3.933 14 H 0.095 0.905 15 N -0.377 5.377 16 C -0.384 4.384 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.575 5.575 20 Si 0.713 3.287 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.202 1.202 24 C -0.181 4.181 25 C 0.035 3.965 26 H 0.087 0.913 27 C -0.219 4.219 28 C -0.131 4.131 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.198 0.802 44 H 0.071 0.929 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.065 0.046 3.046 22.275 hybrid contribution 0.861 0.136 1.192 1.477 sum -21.205 0.182 4.238 21.625 Atomic orbital electron populations 1.21746 0.94832 1.01595 1.02174 1.20544 0.96078 0.92796 1.02875 1.19882 0.99510 0.96210 0.93275 1.21008 1.00019 0.94869 0.97487 1.21072 0.99444 0.94776 0.97710 1.19911 0.99156 0.96113 0.93217 1.20319 0.93379 0.92078 1.04252 1.21629 0.96359 0.94169 1.04906 1.20315 0.80669 0.91422 0.75880 1.90647 1.54679 1.46631 1.51221 1.48653 1.05119 1.08445 1.72257 1.23471 0.88443 0.91696 1.01731 1.21288 0.85235 0.89093 0.97641 0.90536 1.42672 1.24263 1.44263 1.26515 1.19069 1.04855 1.10048 1.04383 0.88991 1.24683 0.97624 0.98110 0.98242 1.69693 1.21075 1.27719 1.39024 0.86576 0.79198 0.78316 0.84567 1.20949 1.21605 1.20220 1.23062 0.93275 0.99516 1.02232 1.21465 0.92587 0.83974 0.98484 0.91343 1.22130 1.02609 0.99588 0.97572 1.21055 0.99563 0.94807 0.97668 1.20996 1.00113 0.94888 0.97463 0.92615 0.92592 0.92479 0.91041 0.91085 0.86224 0.85999 0.90286 0.90363 0.88894 0.88700 0.91371 0.90757 0.80237 0.92860 0.89942 0.90889 0.91380 0.92027 0.92366 0.86096 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.09 -0.64 6.07 -27.88 -0.17 -0.81 16 3 C -0.09 -0.85 5.13 -104.62 -0.54 -1.38 16 4 C -0.12 -1.13 9.70 -39.59 -0.38 -1.52 16 5 C -0.11 -1.16 9.70 -39.58 -0.38 -1.55 16 6 C -0.08 -0.91 5.13 -104.62 -0.54 -1.44 16 7 C -0.06 -0.70 4.63 -27.88 -0.13 -0.83 16 8 C -0.13 -1.57 4.68 -27.88 -0.13 -1.70 16 9 C 0.53 7.80 7.63 -10.98 -0.08 7.72 16 10 O -0.55 -9.47 14.87 5.56 0.08 -9.39 16 11 N -0.61 -9.03 3.08 -162.87 -0.50 -9.53 16 12 C 0.07 1.14 6.39 -2.41 -0.02 1.12 16 13 C 0.18 3.13 3.73 -65.66 -0.24 2.89 16 14 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 15 N -0.74 -15.98 5.04 -51.24 -0.26 -16.24 16 16 C -0.25 -6.70 10.44 -15.06 -0.16 -6.86 16 17 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 18 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 19 N -0.93 -28.02 13.97 55.49 0.78 -27.25 16 20 Si 0.88 21.03 27.74 -169.99 -4.71 16.31 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.14 6.52 56.52 0.37 -5.77 16 24 C -0.14 -2.05 6.14 -24.90 -0.15 -2.21 16 25 C 0.14 1.94 3.49 -66.96 -0.23 1.71 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 27 C -0.16 -2.12 9.07 37.16 0.34 -1.78 16 28 C -0.11 -1.16 9.70 -39.58 -0.38 -1.55 16 29 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 38 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.10 7.85 -51.93 -0.41 0.70 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.07 1.16 7.48 -51.92 -0.39 0.77 16 43 H 0.36 7.79 5.63 -40.82 -0.23 7.56 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.08 1.11 7.83 -51.93 -0.41 0.71 16 46 H 0.07 1.04 8.01 -51.93 -0.42 0.62 16 47 H 0.07 0.99 6.74 -51.93 -0.35 0.64 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 51 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 409.79 15.07 6.18 6.18 Total: -1.00 -30.86 409.79 -10.72 -41.58 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -8.96 Total: 8.44 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -3.32 Total: -10.10 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.01 Total: -53.01 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.31 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.86 -10.72 -41.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989785218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.444 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds