Wall clock time and date at job start Tue Mar 31 2020 16:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46925 * 2 1 4 4 C 1.38231 * 119.99884 * 269.72543 * 3 2 1 5 5 C 1.38232 * 119.99941 * 179.77036 * 4 3 2 6 6 C 1.38241 * 119.99990 * 0.48356 * 5 4 3 7 7 C 1.50696 * 120.00172 * 179.77042 * 6 5 4 8 8 C 1.53002 * 109.46919 * 270.02062 * 7 6 5 9 9 C 1.50706 * 109.46925 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00072 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99766 * 180.02562 * 9 8 7 12 12 C 1.47423 * 125.65179 * 359.68993 * 11 9 8 13 13 C 1.55130 * 104.72215 * 155.81688 * 12 11 9 14 14 H 1.08994 * 111.22688 * 279.17633 * 13 12 11 15 15 N 1.46499 * 110.90151 * 155.27553 * 13 12 11 16 16 C 1.36939 * 120.00036 * 92.97906 * 15 13 12 17 17 H 1.08000 * 119.99881 * 359.97438 * 16 15 13 18 18 C 1.38806 * 120.00297 * 179.97438 * 16 15 13 19 19 N 1.31617 * 120.00471 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99800 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47531 * 89.99962 * 20 18 16 22 22 H 1.48502 * 109.47071 * 210.00283 * 20 18 16 23 23 H 1.48504 * 109.47129 * 329.99520 * 20 18 16 24 24 C 1.55157 * 101.48310 * 37.29830 * 13 12 11 25 25 C 1.47022 * 125.64673 * 179.97438 * 11 9 8 26 26 H 1.09000 * 109.88414 * 61.60316 * 25 11 9 27 27 C 1.53003 * 109.88140 * 300.59520 * 25 11 9 28 28 C 1.38238 * 119.99720 * 359.79405 * 6 5 4 29 29 C 1.38234 * 120.00071 * 359.95221 * 28 6 5 30 30 H 1.09004 * 109.46930 * 299.99901 * 1 2 3 31 31 H 1.09004 * 109.47059 * 59.99503 * 1 2 3 32 32 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46497 * 240.00263 * 2 1 3 34 34 H 1.09000 * 109.47312 * 120.00043 * 2 1 3 35 35 H 1.07997 * 120.00101 * 0.02562 * 4 3 2 36 36 H 1.08002 * 120.00590 * 180.25684 * 5 4 3 37 37 H 1.09000 * 109.47165 * 30.02197 * 7 6 5 38 38 H 1.09004 * 109.47237 * 150.02351 * 7 6 5 39 39 H 1.08992 * 109.47461 * 300.00320 * 8 7 6 40 40 H 1.09001 * 109.47185 * 60.00553 * 8 7 6 41 41 H 1.09002 * 110.36496 * 274.74993 * 12 11 9 42 42 H 1.09010 * 110.36248 * 37.07129 * 12 11 9 43 43 H 0.96998 * 120.00540 * 272.97567 * 15 13 12 44 44 H 0.97000 * 120.00792 * 179.97438 * 19 18 16 45 45 H 1.08997 * 110.71564 * 205.96767 * 24 13 12 46 46 H 1.09004 * 110.87264 * 82.76416 * 24 13 12 47 47 H 1.09000 * 109.46944 * 61.45671 * 27 25 11 48 48 H 1.09005 * 109.46946 * 181.45101 * 27 25 11 49 49 H 1.08997 * 109.46940 * 301.44828 * 27 25 11 50 50 H 1.08003 * 119.99825 * 179.97438 * 28 6 5 51 51 H 1.07997 * 119.99984 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1972 6 6 2.9543 4.0273 0.0000 7 6 3.4565 5.4481 0.0000 8 6 4.9866 5.4481 0.0000 9 6 5.4889 6.8690 0.0007 10 8 4.7008 7.7908 0.0015 11 7 6.8140 7.1153 0.0002 12 6 7.8776 6.0945 0.0057 13 6 9.1101 6.8062 -0.6116 14 1 9.0526 6.8220 -1.6999 15 7 10.3553 6.1779 -0.1634 16 6 10.9312 5.1876 -0.9137 17 1 10.4673 4.8696 -1.8357 18 6 12.1113 4.5926 -0.4894 19 7 12.6646 3.6405 -1.2102 20 14 12.9134 5.1422 1.1056 21 1 12.3889 4.3265 2.2303 22 1 14.3843 4.9624 1.0076 23 1 12.6049 6.5746 1.3470 24 6 8.9665 8.2359 -0.0262 25 6 7.4380 8.4465 0.0002 26 1 7.1543 8.9889 0.9021 27 6 6.9954 9.2286 -1.2380 28 6 2.7240 3.3756 1.1972 29 6 2.2627 2.0725 1.1972 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0919 1.5601 -2.1324 36 1 2.9046 3.8846 -2.1324 37 1 3.0932 5.9620 -0.8899 38 1 3.0932 5.9620 0.8901 39 1 5.3499 4.9343 0.8899 40 1 5.3499 4.9344 -0.8900 41 1 8.0922 5.7757 1.0257 42 1 7.5871 5.2407 -0.6065 43 1 10.7719 6.4632 0.6648 44 1 13.4895 3.2249 -0.9139 45 1 9.4453 8.9685 -0.6760 46 1 9.3807 8.2867 0.9808 47 1 5.9139 9.3622 -1.2160 48 1 7.4818 10.2041 -1.2446 49 1 7.2754 8.6770 -2.1354 50 1 2.9040 3.8847 2.1325 51 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989785218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:23 Heat of formation + Delta-G solvation = -33.261619 kcal Electronic energy + Delta-G solvation = -27661.672166 eV Core-core repulsion = 23945.491157 eV Total energy + Delta-G solvation = -3716.181009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.33625 -40.39952 -38.89596 -36.18612 -35.95259 -33.72915 -33.47112 -32.54634 -31.79951 -30.41858 -29.63425 -26.76886 -26.19936 -25.38165 -23.73747 -23.61875 -22.68029 -21.68920 -21.20402 -19.97176 -19.65795 -18.21701 -17.27103 -16.90438 -16.83108 -16.57119 -16.26432 -15.92349 -15.68222 -15.28537 -14.84394 -14.66563 -14.61548 -14.52150 -14.36975 -14.24643 -14.06602 -14.03091 -13.78094 -13.40432 -13.22823 -13.16746 -13.08854 -12.85657 -12.65397 -12.41778 -12.32830 -12.23405 -12.16267 -11.91486 -11.89658 -11.81565 -11.65600 -11.61968 -11.45487 -11.06768 -10.79338 -9.80452 -9.69918 -9.39459 -9.33094 -8.00884 -5.36650 0.41206 0.52100 1.41775 1.44365 1.51617 1.61355 1.98473 2.50313 2.83866 3.28459 3.29803 3.68053 3.78304 3.85582 3.87767 3.92247 4.05547 4.08170 4.11354 4.16897 4.25896 4.32670 4.35949 4.41058 4.46421 4.51861 4.58816 4.61941 4.64247 4.70450 4.72553 4.81317 4.89020 4.93250 5.01501 5.06710 5.07897 5.09537 5.13727 5.21515 5.23181 5.25189 5.33402 5.38765 5.47346 5.54468 5.74228 5.75350 5.78383 6.14520 6.22322 6.54083 7.07341 7.15191 7.81204 8.00609 9.19948 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.002679 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.268941 B =10448.494622 C =12499.543434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.094 4.094 4 C -0.126 4.126 5 C -0.124 4.124 6 C -0.096 4.096 7 C -0.052 4.052 8 C -0.124 4.124 9 C 0.526 3.474 10 O -0.576 6.576 11 N -0.611 5.611 12 C 0.084 3.916 13 C 0.170 3.830 14 H 0.065 0.935 15 N -0.737 5.737 16 C -0.232 4.232 17 H 0.060 0.940 18 C -0.060 4.060 19 N -0.982 5.982 20 Si 0.951 3.049 21 H -0.279 1.279 22 H -0.300 1.300 23 H -0.247 1.247 24 C -0.129 4.129 25 C 0.136 3.864 26 H 0.075 0.925 27 C -0.154 4.154 28 C -0.122 4.122 29 C -0.125 4.125 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.370 0.630 44 H 0.258 0.742 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.052 0.948 48 H 0.083 0.917 49 H 0.051 0.949 50 H 0.130 0.870 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.476 0.501 4.746 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.094 4.094 4 C -0.144 4.144 5 C -0.142 4.142 6 C -0.096 4.096 7 C -0.090 4.090 8 C -0.164 4.164 9 C 0.317 3.683 10 O -0.457 6.457 11 N -0.344 5.344 12 C -0.041 4.041 13 C 0.060 3.940 14 H 0.083 0.917 15 N -0.379 5.379 16 C -0.363 4.363 17 H 0.078 0.922 18 C -0.252 4.252 19 N -0.632 5.632 20 Si 0.779 3.221 21 H -0.205 1.205 22 H -0.227 1.227 23 H -0.171 1.171 24 C -0.167 4.167 25 C 0.033 3.967 26 H 0.093 0.907 27 C -0.212 4.212 28 C -0.140 4.140 29 C -0.143 4.143 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.204 0.796 44 H 0.066 0.934 45 H 0.114 0.886 46 H 0.101 0.899 47 H 0.071 0.929 48 H 0.102 0.898 49 H 0.070 0.930 50 H 0.148 0.852 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.917 0.829 4.566 23.382 hybrid contribution 0.994 -0.088 0.636 1.183 sum -21.924 0.741 5.202 22.544 Atomic orbital electron populations 1.21725 0.94127 1.02362 1.01873 1.20591 0.96624 0.91569 1.03477 1.20195 0.98870 0.97207 0.93133 1.21253 0.99923 0.94809 0.98397 1.21252 0.99681 0.95281 0.97948 1.19909 1.00098 0.95878 0.93725 1.20190 0.92687 0.92465 1.03685 1.21626 0.96926 0.92446 1.05412 1.20732 0.80327 0.92178 0.75078 1.90638 1.55094 1.47626 1.52309 1.48679 1.05053 1.08539 1.72177 1.23165 0.87881 0.91559 1.01536 1.21428 0.84130 0.91127 0.97324 0.91713 1.42583 1.25553 1.43548 1.26261 1.19007 1.04136 1.09961 1.03220 0.92156 1.25477 0.98772 0.98753 1.02150 1.69875 1.21823 1.29964 1.41503 0.85470 0.77177 0.79447 0.80035 1.20516 1.22748 1.17134 1.22983 0.93657 0.97296 1.02784 1.21566 0.92194 0.83770 0.99198 0.90656 1.22071 1.01766 1.00566 0.96826 1.21251 0.99603 0.95264 0.97901 1.21258 0.99865 0.94825 0.98354 0.92858 0.92954 0.91190 0.90535 0.90413 0.84846 0.85402 0.90974 0.90777 0.88050 0.88330 0.91160 0.90989 0.79639 0.93351 0.88612 0.89880 0.92863 0.89785 0.92985 0.85166 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 71.98 0.71 -0.95 16 2 C -0.09 -1.14 6.07 29.85 0.18 -0.96 16 3 C -0.09 -1.68 5.13 -19.86 -0.10 -1.78 16 4 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 5 C -0.12 -2.51 9.70 22.27 0.22 -2.30 16 6 C -0.10 -2.02 5.13 -19.86 -0.10 -2.12 16 7 C -0.05 -1.15 4.63 29.85 0.14 -1.02 16 8 C -0.12 -2.89 4.68 29.85 0.14 -2.75 16 9 C 0.53 15.04 7.63 87.66 0.67 15.71 16 10 O -0.58 -19.31 14.87 -3.03 -0.04 -19.36 16 11 N -0.61 -17.15 3.08 -787.61 -2.43 -19.58 16 12 C 0.08 2.54 6.39 86.93 0.56 3.09 16 13 C 0.17 5.70 3.73 46.46 0.17 5.87 16 14 H 0.06 2.34 8.09 -2.39 -0.02 2.32 16 15 N -0.74 -30.88 5.04 -316.02 -1.59 -32.47 16 16 C -0.23 -12.29 10.44 84.03 0.88 -11.41 16 17 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 18 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 19 N -0.98 -60.65 13.97 21.65 0.30 -60.35 16 20 Si 0.95 42.89 27.74 68.60 1.90 44.79 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.25 -9.82 6.52 99.48 0.65 -9.17 16 24 C -0.13 -3.36 6.14 31.78 0.20 -3.17 16 25 C 0.14 3.52 3.49 45.34 0.16 3.68 16 26 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 27 C -0.15 -3.78 9.07 71.98 0.65 -3.13 16 28 C -0.12 -2.41 9.70 22.27 0.22 -2.19 16 29 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 30 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 34 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 35 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.07 1.66 8.04 -2.39 -0.02 1.64 16 38 H 0.07 1.67 8.04 -2.38 -0.02 1.65 16 39 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 40 H 0.10 2.23 7.85 -2.39 -0.02 2.21 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.07 2.20 7.48 -2.38 -0.02 2.18 16 43 H 0.37 14.77 5.63 -92.71 -0.52 14.25 16 44 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.10 2.28 7.83 -2.39 -0.02 2.26 16 46 H 0.08 2.06 8.01 -2.38 -0.02 2.04 16 47 H 0.05 1.48 6.74 -2.39 -0.02 1.46 16 48 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 49 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 50 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 51 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -66.42 409.79 4.03 -62.39 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: 0.31 Total: 35.09 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 5.58 Total: -10.51 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -3.72 Total: -112.40 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.04 Total: -19.36 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.90 Total: 44.79 kcal Total: -66.42 4.03 -62.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989785218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.124 kcal (2) G-P(sol) polarization free energy of solvation -66.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds