Wall clock time and date at job start Tue Mar 31 2020 16:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47304 * 2 1 4 4 C 1.38231 * 119.99846 * 269.91263 * 3 2 1 5 5 C 1.38243 * 120.00070 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99602 * 0.07188 * 5 4 3 7 7 C 1.50701 * 119.99808 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47174 * 89.99739 * 7 6 5 9 9 C 1.50701 * 109.47554 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99568 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00030 * 180.02562 * 9 8 7 12 12 C 1.47417 * 125.65132 * 359.68858 * 11 9 8 13 13 C 1.55134 * 104.72458 * 155.82197 * 12 11 9 14 14 H 1.09001 * 111.18933 * 279.19370 * 13 12 11 15 15 N 1.46495 * 110.90567 * 155.27585 * 13 12 11 16 16 C 1.36937 * 119.99920 * 92.98049 * 15 13 12 17 17 H 1.07999 * 120.00135 * 359.97438 * 16 15 13 18 18 C 1.38816 * 120.00049 * 179.97438 * 16 15 13 19 19 N 1.31624 * 119.99879 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00079 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46843 * 89.99914 * 20 18 16 22 22 H 1.48507 * 109.47333 * 209.99708 * 20 18 16 23 23 H 1.48498 * 109.47566 * 329.99919 * 20 18 16 24 24 C 1.55154 * 101.48387 * 37.29628 * 13 12 11 25 25 C 1.47020 * 125.64690 * 180.02562 * 11 9 8 26 26 H 1.09006 * 109.88235 * 300.43903 * 25 11 9 27 27 C 1.53007 * 109.88231 * 61.59969 * 25 11 9 28 28 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 29 29 C 1.38234 * 120.00257 * 89.99813 * 3 2 1 30 30 H 1.09007 * 109.47072 * 300.00141 * 1 2 3 31 31 H 1.09000 * 109.47207 * 59.99489 * 1 2 3 32 32 H 1.09005 * 109.47284 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46634 * 240.00015 * 2 1 3 34 34 H 1.09000 * 109.47207 * 120.00511 * 2 1 3 35 35 H 1.08001 * 120.00367 * 0.08711 * 4 3 2 36 36 H 1.08000 * 119.99728 * 180.34119 * 5 4 3 37 37 H 1.08993 * 109.47341 * 210.00461 * 7 6 5 38 38 H 1.09001 * 109.46864 * 330.00546 * 7 6 5 39 39 H 1.09001 * 109.47321 * 300.00573 * 8 7 6 40 40 H 1.09001 * 109.47008 * 59.99990 * 8 7 6 41 41 H 1.09006 * 110.36765 * 274.75280 * 12 11 9 42 42 H 1.09000 * 110.36960 * 37.06986 * 12 11 9 43 43 H 0.97001 * 120.00100 * 272.97251 * 15 13 12 44 44 H 0.97001 * 119.99933 * 180.02562 * 19 18 16 45 45 H 1.08998 * 110.71851 * 205.97459 * 24 13 12 46 46 H 1.08998 * 110.87506 * 82.76524 * 24 13 12 47 47 H 1.08997 * 109.46827 * 58.55410 * 27 25 11 48 48 H 1.09007 * 109.46789 * 178.54731 * 27 25 11 49 49 H 1.08997 * 109.47161 * 298.54915 * 27 25 11 50 50 H 1.08001 * 120.00371 * 179.97438 * 28 6 5 51 51 H 1.07999 * 119.99751 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2645 2.0718 -1.1971 5 6 2.7248 3.3753 -1.1972 6 6 2.9544 4.0272 0.0000 7 6 3.4568 5.4480 0.0000 8 6 2.2669 6.4097 -0.0011 9 6 2.7691 7.8305 -0.0005 10 8 3.9615 8.0521 0.0002 11 7 1.8933 8.8549 -0.0008 12 6 0.4245 8.7295 -0.0081 13 6 -0.0877 10.0575 0.6090 14 1 -0.0339 10.0327 1.6974 15 7 -1.4505 10.3516 0.1592 16 6 -2.5218 9.9431 0.9080 17 1 -2.3620 9.4038 1.8299 18 6 -3.8131 10.2222 0.4820 19 7 -4.0079 10.8799 -0.6414 20 14 -5.2745 9.6644 1.5031 21 1 -5.6322 10.7268 2.4771 22 1 -6.4314 9.4021 0.6097 23 1 -4.9218 8.4209 2.2342 24 6 0.9233 11.0795 0.0254 25 6 2.2446 10.2825 -0.0007 26 1 2.8372 10.5185 0.8832 27 6 3.0337 10.6242 -1.2663 28 6 2.7232 3.3759 1.1971 29 6 2.2628 2.0725 1.1971 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0845 1.5627 -2.1325 36 1 2.9009 3.8857 -2.1325 37 1 4.0618 5.6195 0.8902 38 1 4.0629 5.6190 -0.8897 39 1 1.6619 6.2382 -0.8914 40 1 1.6607 6.2387 0.8885 41 1 0.0585 8.6167 -1.0287 42 1 0.1129 7.8826 0.6032 43 1 -1.5940 10.8357 -0.6690 44 1 -4.9102 11.0753 -0.9388 45 1 1.0106 11.9499 0.6756 46 1 0.6345 11.3797 -0.9819 47 1 2.4361 10.3793 -2.1443 48 1 3.2683 11.6888 -1.2718 49 1 3.9589 10.0482 -1.2842 50 1 2.9030 3.8851 2.1324 51 1 2.0823 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989785219.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:28 Heat of formation + Delta-G solvation = -22.971146 kcal Electronic energy + Delta-G solvation = -27674.406376 eV Core-core repulsion = 23958.671596 eV Total energy + Delta-G solvation = -3715.734781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.10104 -39.55468 -37.49051 -35.25979 -34.21562 -32.76408 -31.55466 -31.32826 -31.05402 -28.85454 -28.37744 -25.47287 -25.18941 -23.86474 -22.87180 -22.86946 -21.33057 -20.51237 -20.24012 -18.55758 -17.43266 -16.96591 -16.23703 -16.05552 -15.81605 -15.28062 -15.03643 -14.79852 -14.19116 -13.97350 -13.91329 -13.68028 -13.55152 -13.37809 -13.30139 -13.04154 -12.84401 -12.63957 -12.59456 -12.25430 -12.09576 -11.91377 -11.67070 -11.62839 -11.55615 -11.17397 -11.13736 -11.02500 -10.93989 -10.87648 -10.79220 -10.64193 -10.31405 -10.05838 -9.80571 -9.59749 -9.05364 -9.04303 -8.61839 -8.33997 -7.13027 -5.88900 -3.19903 1.18429 1.28203 2.85297 3.21886 3.37036 3.42883 3.44086 3.62371 4.44848 4.51248 4.59746 4.62613 4.86212 4.88085 4.92443 5.04980 5.09289 5.11229 5.13213 5.23419 5.26393 5.30095 5.36870 5.40317 5.48337 5.54898 5.59415 5.62475 5.69280 5.69977 5.77046 5.77928 5.82192 5.87636 5.96665 5.99617 6.09100 6.11076 6.12478 6.17618 6.29930 6.33921 6.45215 6.46977 6.47289 6.54602 6.67358 6.81512 6.88791 7.59628 7.83701 8.28348 8.40070 9.40593 9.94080 10.28976 11.33024 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008240 B = 0.002983 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.441756 B = 9385.277250 C =12213.830260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.083 4.083 7 C -0.063 4.063 8 C -0.130 4.130 9 C 0.527 3.473 10 O -0.555 6.555 11 N -0.610 5.610 12 C 0.072 3.928 13 C 0.173 3.827 14 H 0.068 0.932 15 N -0.711 5.711 16 C -0.250 4.250 17 H 0.073 0.927 18 C -0.008 4.008 19 N -0.929 5.929 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.138 4.138 25 C 0.138 3.862 26 H 0.071 0.929 27 C -0.160 4.160 28 C -0.112 4.112 29 C -0.116 4.116 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.387 0.613 44 H 0.257 0.743 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.833 -15.780 0.121 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.083 4.083 7 C -0.101 4.101 8 C -0.170 4.170 9 C 0.316 3.684 10 O -0.434 6.434 11 N -0.343 5.343 12 C -0.054 4.054 13 C 0.060 3.940 14 H 0.086 0.914 15 N -0.351 5.351 16 C -0.380 4.380 17 H 0.091 0.909 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.177 4.177 25 C 0.034 3.966 26 H 0.089 0.911 27 C -0.218 4.218 28 C -0.130 4.130 29 C -0.134 4.134 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.222 0.778 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.334 -15.772 0.242 21.314 hybrid contribution -1.108 -0.136 0.167 1.128 sum 13.227 -15.908 0.410 20.692 Atomic orbital electron populations 1.21759 0.94636 1.01638 1.02481 1.20533 0.96271 0.92725 1.02612 1.19884 0.99464 0.96308 0.93280 1.21001 1.00030 0.94962 0.97460 1.21067 0.99563 0.94723 0.97703 1.19918 0.99259 0.95955 0.93205 1.20321 0.96482 0.88982 1.04268 1.21617 0.99428 0.91154 1.04809 1.20299 0.85603 0.86528 0.76003 1.90646 1.15755 1.85613 1.51387 1.48673 1.07918 1.05780 1.71972 1.23542 0.77349 1.02676 1.01796 1.21329 0.85507 0.90123 0.97019 0.91402 1.42321 0.98717 1.66900 1.27164 1.19254 0.85217 1.30297 1.03273 0.90948 1.24773 0.97516 1.00673 0.97499 1.69660 1.20906 1.44751 1.22333 0.86186 0.82509 0.78272 0.79171 1.21574 1.21681 1.20629 1.23048 0.93605 0.98469 1.02588 1.21501 0.96427 0.80451 0.98208 0.91138 1.22124 1.00902 1.01420 0.97368 1.21066 0.99540 0.94732 0.97709 1.21001 1.00037 0.94946 0.97463 0.92445 0.92442 0.92486 0.91207 0.91205 0.86273 0.86048 0.90303 0.90332 0.88906 0.88859 0.91317 0.91261 0.77846 0.93304 0.90405 0.90443 0.92616 0.91988 0.91636 0.86029 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.08 -0.62 6.06 -27.88 -0.17 -0.79 16 3 C -0.09 -0.85 5.13 -104.63 -0.54 -1.39 16 4 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 5 C -0.11 -1.17 9.70 -39.58 -0.38 -1.55 16 6 C -0.08 -0.91 5.13 -104.63 -0.54 -1.45 16 7 C -0.06 -0.72 4.63 -27.88 -0.13 -0.85 16 8 C -0.13 -1.61 4.68 -27.88 -0.13 -1.74 16 9 C 0.53 8.06 7.64 -10.99 -0.08 7.98 16 10 O -0.55 -9.81 15.02 5.56 0.08 -9.72 16 11 N -0.61 -9.43 3.06 -162.87 -0.50 -9.93 16 12 C 0.07 1.20 6.39 -2.41 -0.02 1.18 16 13 C 0.17 3.17 3.73 -65.66 -0.24 2.93 16 14 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 15 N -0.71 -16.54 5.24 -51.24 -0.27 -16.81 16 16 C -0.25 -6.50 9.96 -15.06 -0.15 -6.65 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 19 N -0.93 -26.83 13.06 55.49 0.72 -26.11 16 20 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.14 -2.15 6.12 -24.90 -0.15 -2.30 16 25 C 0.14 2.04 3.46 -66.95 -0.23 1.81 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 C -0.16 -2.21 9.10 37.16 0.34 -1.87 16 28 C -0.11 -1.17 9.70 -39.59 -0.38 -1.55 16 29 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 38 H 0.08 0.92 8.04 -51.93 -0.42 0.51 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.10 7.85 -51.93 -0.41 0.70 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.11 7.48 -51.93 -0.39 0.72 16 43 H 0.39 9.61 7.77 -40.82 -0.32 9.29 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.08 1.23 7.71 -51.93 -0.40 0.83 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.06 0.98 6.88 -51.93 -0.36 0.63 16 50 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 51 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 413.20 15.07 6.23 6.23 Total: -1.00 -29.87 413.20 -11.07 -40.94 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -9.01 Total: 9.28 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -3.31 Total: -10.31 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.04 Total: -52.84 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -29.87 -11.07 -40.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989785219.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.967 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds