Wall clock time and date at job start Tue Mar 31 2020 16:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47304 * 2 1 4 4 C 1.38231 * 119.99846 * 269.91263 * 3 2 1 5 5 C 1.38243 * 120.00070 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99602 * 0.07188 * 5 4 3 7 7 C 1.50701 * 119.99808 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47174 * 89.99739 * 7 6 5 9 9 C 1.50701 * 109.47554 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99568 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00030 * 180.02562 * 9 8 7 12 12 C 1.47417 * 125.65132 * 359.68858 * 11 9 8 13 13 C 1.55134 * 104.72458 * 155.82197 * 12 11 9 14 14 H 1.09001 * 111.18933 * 279.19370 * 13 12 11 15 15 N 1.46495 * 110.90567 * 155.27585 * 13 12 11 16 16 C 1.36937 * 119.99920 * 92.98049 * 15 13 12 17 17 H 1.07999 * 120.00135 * 359.97438 * 16 15 13 18 18 C 1.38816 * 120.00049 * 179.97438 * 16 15 13 19 19 N 1.31624 * 119.99879 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00079 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46843 * 89.99914 * 20 18 16 22 22 H 1.48507 * 109.47333 * 209.99708 * 20 18 16 23 23 H 1.48498 * 109.47566 * 329.99919 * 20 18 16 24 24 C 1.55154 * 101.48387 * 37.29628 * 13 12 11 25 25 C 1.47020 * 125.64690 * 180.02562 * 11 9 8 26 26 H 1.09006 * 109.88235 * 300.43903 * 25 11 9 27 27 C 1.53007 * 109.88231 * 61.59969 * 25 11 9 28 28 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 29 29 C 1.38234 * 120.00257 * 89.99813 * 3 2 1 30 30 H 1.09007 * 109.47072 * 300.00141 * 1 2 3 31 31 H 1.09000 * 109.47207 * 59.99489 * 1 2 3 32 32 H 1.09005 * 109.47284 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46634 * 240.00015 * 2 1 3 34 34 H 1.09000 * 109.47207 * 120.00511 * 2 1 3 35 35 H 1.08001 * 120.00367 * 0.08711 * 4 3 2 36 36 H 1.08000 * 119.99728 * 180.34119 * 5 4 3 37 37 H 1.08993 * 109.47341 * 210.00461 * 7 6 5 38 38 H 1.09001 * 109.46864 * 330.00546 * 7 6 5 39 39 H 1.09001 * 109.47321 * 300.00573 * 8 7 6 40 40 H 1.09001 * 109.47008 * 59.99990 * 8 7 6 41 41 H 1.09006 * 110.36765 * 274.75280 * 12 11 9 42 42 H 1.09000 * 110.36960 * 37.06986 * 12 11 9 43 43 H 0.97001 * 120.00100 * 272.97251 * 15 13 12 44 44 H 0.97001 * 119.99933 * 180.02562 * 19 18 16 45 45 H 1.08998 * 110.71851 * 205.97459 * 24 13 12 46 46 H 1.08998 * 110.87506 * 82.76524 * 24 13 12 47 47 H 1.08997 * 109.46827 * 58.55410 * 27 25 11 48 48 H 1.09007 * 109.46789 * 178.54731 * 27 25 11 49 49 H 1.08997 * 109.47161 * 298.54915 * 27 25 11 50 50 H 1.08001 * 120.00371 * 179.97438 * 28 6 5 51 51 H 1.07999 * 119.99751 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2645 2.0718 -1.1971 5 6 2.7248 3.3753 -1.1972 6 6 2.9544 4.0272 0.0000 7 6 3.4568 5.4480 0.0000 8 6 2.2669 6.4097 -0.0011 9 6 2.7691 7.8305 -0.0005 10 8 3.9615 8.0521 0.0002 11 7 1.8933 8.8549 -0.0008 12 6 0.4245 8.7295 -0.0081 13 6 -0.0877 10.0575 0.6090 14 1 -0.0339 10.0327 1.6974 15 7 -1.4505 10.3516 0.1592 16 6 -2.5218 9.9431 0.9080 17 1 -2.3620 9.4038 1.8299 18 6 -3.8131 10.2222 0.4820 19 7 -4.0079 10.8799 -0.6414 20 14 -5.2745 9.6644 1.5031 21 1 -5.6322 10.7268 2.4771 22 1 -6.4314 9.4021 0.6097 23 1 -4.9218 8.4209 2.2342 24 6 0.9233 11.0795 0.0254 25 6 2.2446 10.2825 -0.0007 26 1 2.8372 10.5185 0.8832 27 6 3.0337 10.6242 -1.2663 28 6 2.7232 3.3759 1.1971 29 6 2.2628 2.0725 1.1971 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0845 1.5627 -2.1325 36 1 2.9009 3.8857 -2.1325 37 1 4.0618 5.6195 0.8902 38 1 4.0629 5.6190 -0.8897 39 1 1.6619 6.2382 -0.8914 40 1 1.6607 6.2387 0.8885 41 1 0.0585 8.6167 -1.0287 42 1 0.1129 7.8826 0.6032 43 1 -1.5940 10.8357 -0.6690 44 1 -4.9102 11.0753 -0.9388 45 1 1.0106 11.9499 0.6756 46 1 0.6345 11.3797 -0.9819 47 1 2.4361 10.3793 -2.1443 48 1 3.2683 11.6888 -1.2718 49 1 3.9589 10.0482 -1.2842 50 1 2.9030 3.8851 2.1324 51 1 2.0823 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989785219.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:27 Heat of formation + Delta-G solvation = -36.631077 kcal Electronic energy + Delta-G solvation = -27674.998715 eV Core-core repulsion = 23958.671596 eV Total energy + Delta-G solvation = -3716.327120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30016 -40.38923 -38.82479 -36.12558 -35.90292 -33.70448 -33.23694 -32.52613 -31.79524 -30.09565 -29.60107 -26.72927 -26.19638 -25.62140 -23.72142 -23.61441 -22.49360 -21.75337 -21.22899 -19.82314 -19.25912 -18.18957 -17.44313 -16.92004 -16.79448 -16.58035 -16.15375 -15.90244 -15.57713 -15.36450 -14.88597 -14.67444 -14.59099 -14.47615 -14.33842 -14.18562 -14.00545 -13.73104 -13.58269 -13.47714 -13.37040 -13.02719 -12.85640 -12.80458 -12.59598 -12.45551 -12.32589 -12.31964 -12.08095 -12.02366 -11.89562 -11.73262 -11.65743 -11.61106 -11.48723 -11.02364 -10.79173 -9.80045 -9.65927 -9.39189 -9.04606 -7.94271 -5.24101 0.41506 0.52456 1.51272 1.51468 1.59771 1.62097 2.00261 2.57537 2.84337 3.37271 3.38391 3.76019 3.84222 3.88626 3.93085 3.98249 4.07545 4.10942 4.16839 4.17391 4.25560 4.32167 4.35920 4.46157 4.51354 4.52816 4.58852 4.61972 4.64575 4.72165 4.73907 4.80912 4.85991 4.93567 5.06909 5.07333 5.08635 5.08917 5.14058 5.21988 5.24687 5.25597 5.38278 5.39426 5.43991 5.54776 5.55366 5.74749 5.75718 6.14879 6.26798 6.56563 7.15582 7.34650 8.05860 8.30059 9.28564 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008240 B = 0.002983 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.441756 B = 9385.277250 C =12213.830260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.094 4.094 4 C -0.125 4.125 5 C -0.123 4.123 6 C -0.096 4.096 7 C -0.053 4.053 8 C -0.123 4.123 9 C 0.525 3.475 10 O -0.578 6.578 11 N -0.610 5.610 12 C 0.087 3.913 13 C 0.165 3.835 14 H 0.067 0.933 15 N -0.722 5.722 16 C -0.243 4.243 17 H 0.080 0.920 18 C -0.069 4.069 19 N -0.966 5.966 20 Si 0.968 3.032 21 H -0.289 1.289 22 H -0.298 1.298 23 H -0.268 1.268 24 C -0.126 4.126 25 C 0.136 3.864 26 H 0.075 0.925 27 C -0.152 4.152 28 C -0.123 4.123 29 C -0.125 4.125 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.377 0.623 44 H 0.251 0.749 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.051 0.949 48 H 0.082 0.918 49 H 0.052 0.948 50 H 0.129 0.871 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.257 -17.167 0.864 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.143 4.143 5 C -0.141 4.141 6 C -0.096 4.096 7 C -0.091 4.091 8 C -0.163 4.163 9 C 0.316 3.684 10 O -0.459 6.459 11 N -0.344 5.344 12 C -0.038 4.038 13 C 0.055 3.945 14 H 0.085 0.915 15 N -0.361 5.361 16 C -0.374 4.374 17 H 0.098 0.902 18 C -0.262 4.262 19 N -0.617 5.617 20 Si 0.798 3.202 21 H -0.216 1.216 22 H -0.225 1.225 23 H -0.193 1.193 24 C -0.165 4.165 25 C 0.033 3.967 26 H 0.093 0.907 27 C -0.210 4.210 28 C -0.141 4.141 29 C -0.143 4.143 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.210 0.790 44 H 0.060 0.940 45 H 0.108 0.892 46 H 0.093 0.907 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.071 0.929 50 H 0.147 0.853 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.806 -17.181 1.013 22.703 hybrid contribution -1.135 0.273 -0.045 1.168 sum 13.671 -16.908 0.968 21.765 Atomic orbital electron populations 1.21748 0.94591 1.02324 1.01740 1.20573 0.96188 0.91569 1.03635 1.20198 0.98784 0.97326 0.93111 1.21257 0.99805 0.94858 0.98399 1.21249 0.99728 0.95254 0.97899 1.19898 1.00259 0.95652 0.93761 1.20191 0.95881 0.89314 1.03674 1.21616 0.99892 0.89371 1.05406 1.20771 0.85185 0.87375 0.75108 1.90637 1.16739 1.86067 1.52435 1.48702 1.07371 1.06285 1.72002 1.23176 0.77937 1.01629 1.01106 1.21490 0.84011 0.91942 0.97101 0.91505 1.42431 1.00091 1.66981 1.26625 1.19627 0.86011 1.28630 1.03171 0.90239 1.25505 1.00071 1.01839 0.98773 1.69804 1.20807 1.46887 1.24158 0.85221 0.79268 0.78156 0.77593 1.21615 1.22501 1.19282 1.22944 0.92847 0.98249 1.02448 1.21565 0.96089 0.80042 0.99002 0.90723 1.22048 0.99885 1.02570 0.96505 1.21251 0.99664 0.95250 0.97903 1.21259 0.99792 0.94846 0.98393 0.93164 0.93184 0.91118 0.90218 0.90190 0.84751 0.85368 0.90844 0.90963 0.88294 0.88047 0.92267 0.90601 0.79045 0.94004 0.89170 0.90716 0.93022 0.89917 0.92872 0.85258 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.89 71.98 0.71 -1.19 16 2 C -0.08 -1.05 6.06 29.85 0.18 -0.87 16 3 C -0.09 -1.64 5.13 -19.87 -0.10 -1.74 16 4 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 5 C -0.12 -2.46 9.70 22.27 0.22 -2.24 16 6 C -0.10 -2.01 5.13 -19.87 -0.10 -2.11 16 7 C -0.05 -1.18 4.63 29.85 0.14 -1.04 16 8 C -0.12 -2.92 4.68 29.85 0.14 -2.78 16 9 C 0.53 15.58 7.64 87.66 0.67 16.25 16 10 O -0.58 -20.04 15.02 -3.03 -0.05 -20.08 16 11 N -0.61 -18.16 3.06 -787.61 -2.41 -20.57 16 12 C 0.09 2.80 6.39 86.94 0.56 3.35 16 13 C 0.17 5.90 3.73 46.46 0.17 6.08 16 14 H 0.07 2.42 8.09 -2.39 -0.02 2.40 16 15 N -0.72 -33.36 5.24 -316.02 -1.66 -35.02 16 16 C -0.24 -12.51 9.96 84.03 0.84 -11.67 16 17 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 18 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 19 N -0.97 -56.48 13.06 21.65 0.28 -56.20 16 20 Si 0.97 44.01 29.55 68.60 2.03 46.03 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 C -0.13 -3.75 6.12 31.78 0.19 -3.56 16 25 C 0.14 3.85 3.46 45.34 0.16 4.01 16 26 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 27 C -0.15 -3.98 9.10 71.98 0.66 -3.33 16 28 C -0.12 -2.43 9.70 22.27 0.22 -2.21 16 29 C -0.13 -2.26 9.70 22.27 0.22 -2.04 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.70 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 34 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 35 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.07 1.70 8.04 -2.39 -0.02 1.68 16 38 H 0.07 1.68 8.04 -2.39 -0.02 1.66 16 39 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.10 2.26 7.85 -2.39 -0.02 2.24 16 41 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 42 H 0.08 2.33 7.48 -2.39 -0.02 2.31 16 43 H 0.38 18.84 7.77 -92.71 -0.72 18.12 16 44 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 45 H 0.09 2.46 8.14 -2.39 -0.02 2.45 16 46 H 0.07 2.29 7.71 -2.39 -0.02 2.27 16 47 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 49 H 0.05 1.54 6.88 -2.39 -0.02 1.52 16 50 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 51 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -62.76 413.20 3.91 -58.85 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: 0.17 Total: 37.43 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 5.54 Total: -10.45 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -3.79 Total: -111.79 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.05 Total: -20.08 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -62.76 3.91 -58.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989785219.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.220 kcal (2) G-P(sol) polarization free energy of solvation -62.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds