Wall clock time and date at job start Tue Mar 31 2020 16:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50694 * 109.47038 * 2 1 4 4 C 1.38235 * 120.00034 * 90.00575 * 3 2 1 5 5 C 1.38235 * 120.00136 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99904 * 359.94460 * 5 4 3 7 7 C 1.50705 * 120.00201 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46890 * 90.00141 * 7 6 5 9 9 C 1.50699 * 109.47186 * 179.97438 * 8 7 6 10 10 O 1.21285 * 119.99794 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00365 * 180.02562 * 9 8 7 12 12 C 1.47422 * 125.64527 * 0.03003 * 11 9 8 13 13 C 1.54917 * 104.83074 * 204.09182 * 12 11 9 14 14 H 1.08998 * 111.00524 * 81.06438 * 13 12 11 15 15 N 1.46501 * 111.00214 * 204.91534 * 13 12 11 16 16 C 1.36943 * 119.99850 * 273.54300 * 15 13 12 17 17 H 1.07995 * 120.00008 * 0.02562 * 16 15 13 18 18 C 1.38810 * 119.99393 * 180.02562 * 16 15 13 19 19 N 1.31623 * 119.99405 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00552 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46619 * 90.00049 * 20 18 16 22 22 H 1.48494 * 109.47052 * 210.00153 * 20 18 16 23 23 H 1.48493 * 109.47019 * 330.00543 * 20 18 16 24 24 C 1.55158 * 101.57978 * 322.98980 * 13 12 11 25 25 C 1.47020 * 125.65281 * 179.97438 * 11 9 8 26 26 H 1.09003 * 109.87996 * 298.39630 * 25 11 9 27 27 C 1.53005 * 110.01051 * 59.48427 * 25 11 9 28 28 C 1.38236 * 119.99843 * 0.28362 * 6 5 4 29 29 C 1.38232 * 120.00054 * 269.97564 * 3 2 1 30 30 H 1.08998 * 109.46915 * 59.99733 * 1 2 3 31 31 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47101 * 300.00008 * 1 2 3 33 33 H 1.08998 * 109.47072 * 239.99591 * 2 1 3 34 34 H 1.09006 * 109.46611 * 120.00161 * 2 1 3 35 35 H 1.08003 * 120.00235 * 359.96782 * 4 3 2 36 36 H 1.08003 * 119.99998 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.46769 * 330.00375 * 7 6 5 38 38 H 1.08993 * 109.47144 * 210.00600 * 7 6 5 39 39 H 1.09004 * 109.46897 * 60.00035 * 8 7 6 40 40 H 1.08993 * 109.47602 * 300.00179 * 8 7 6 41 41 H 1.08998 * 110.36873 * 85.25268 * 12 11 9 42 42 H 1.09005 * 110.36491 * 322.92676 * 12 11 9 43 43 H 0.97001 * 119.99967 * 93.54562 * 15 13 12 44 44 H 0.97002 * 119.99954 * 179.97438 * 19 18 16 45 45 H 1.09003 * 110.71801 * 153.86773 * 24 13 12 46 46 H 1.09003 * 110.71814 * 277.13679 * 24 13 12 47 47 H 1.09005 * 109.46851 * 177.88982 * 27 25 11 48 48 H 1.08999 * 109.47141 * 297.88909 * 27 25 11 49 49 H 1.09001 * 109.46987 * 57.88898 * 27 25 11 50 50 H 1.08003 * 119.99887 * 179.72051 * 28 6 5 51 51 H 1.07996 * 120.00261 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2629 2.0724 1.1971 5 6 2.7231 3.3759 1.1972 6 6 2.9540 4.0273 0.0000 7 6 3.4563 5.4482 0.0000 8 6 4.9863 5.4482 0.0005 9 6 5.4886 6.8689 -0.0001 10 8 4.7005 7.7908 -0.0005 11 7 6.8137 7.1153 -0.0003 12 6 7.8773 6.0944 -0.0006 13 6 9.1101 6.8061 0.6106 14 1 9.0524 6.8220 1.6989 15 7 10.3551 6.1777 0.1620 16 6 10.8622 5.1017 0.8406 17 1 10.3441 4.7163 1.7062 18 6 12.0422 4.5067 0.4158 19 7 12.5293 3.4722 1.0677 20 14 12.9379 5.1729 -1.0820 21 1 13.9074 6.2141 -0.6562 22 1 13.6635 4.0673 -1.7572 23 1 11.9548 5.7673 -2.0228 24 6 8.9664 8.2358 0.0251 25 6 7.4379 8.4464 -0.0015 26 1 7.1539 8.9881 -0.9038 27 6 6.9992 9.2315 1.2363 28 6 2.7190 3.3773 -1.1971 29 6 2.2632 2.0722 -1.1971 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.0825 1.5634 2.1325 36 1 2.9028 3.8851 2.1325 37 1 3.0927 5.9621 0.8898 38 1 3.0932 5.9619 -0.8901 39 1 5.3499 4.9342 -0.8893 40 1 5.3493 4.9345 0.8906 41 1 8.0923 5.7708 -1.0189 42 1 7.5865 5.2435 0.6155 43 1 10.8203 6.5237 -0.6157 44 1 13.3536 3.0561 0.7707 45 1 9.4455 8.9685 0.6746 46 1 9.3797 8.2833 -0.9824 47 1 7.4958 10.2018 1.2460 48 1 5.9192 9.3763 1.2108 49 1 7.2701 8.6756 2.1339 50 1 2.8950 3.8878 -2.1324 51 1 2.0832 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989785220.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:31 Heat of formation + Delta-G solvation = -18.032698 kcal Electronic energy + Delta-G solvation = -27677.192824 eV Core-core repulsion = 23961.672190 eV Total energy + Delta-G solvation = -3715.520633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.16757 -39.57932 -37.61745 -35.27160 -34.34350 -32.79587 -31.69047 -31.41167 -31.04452 -28.95152 -28.72400 -25.58838 -25.25811 -23.70857 -22.86065 -22.84375 -21.45444 -20.55728 -20.16282 -18.73655 -17.76871 -17.03956 -16.18919 -16.06379 -15.66219 -15.47479 -15.12667 -14.82320 -14.22233 -13.99707 -13.91691 -13.73498 -13.57512 -13.45928 -13.26669 -13.14513 -12.98639 -12.79497 -12.53958 -12.40235 -12.10754 -11.96363 -11.83327 -11.62876 -11.56444 -11.54875 -11.14261 -11.10802 -10.94252 -10.88593 -10.84617 -10.67334 -10.40236 -10.08462 -9.71080 -9.64548 -9.08187 -9.03240 -8.61222 -8.41850 -7.43643 -5.88266 -3.26622 1.19272 1.29307 2.80421 3.15238 3.29796 3.32670 3.38957 3.62770 4.44912 4.48860 4.57660 4.60505 4.83420 4.85625 4.88733 5.00842 5.03674 5.07612 5.08394 5.14486 5.22387 5.27511 5.29212 5.37843 5.39183 5.48356 5.51728 5.58191 5.61750 5.68194 5.74203 5.74706 5.77999 5.84938 5.85859 5.94633 5.99656 6.02686 6.09653 6.10497 6.16347 6.30794 6.32761 6.41690 6.48168 6.54907 6.57864 6.71565 6.89710 7.75869 7.85814 8.30157 8.34681 9.06779 9.78936 9.96897 11.29324 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.002698 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.755270 B =10373.777802 C =12464.150395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.089 4.089 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.084 4.084 7 C -0.062 4.062 8 C -0.131 4.131 9 C 0.528 3.472 10 O -0.553 6.553 11 N -0.611 5.611 12 C 0.074 3.926 13 C 0.179 3.821 14 H 0.073 0.927 15 N -0.737 5.737 16 C -0.253 4.253 17 H 0.092 0.908 18 C 0.010 3.990 19 N -0.929 5.929 20 Si 0.884 3.116 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.276 1.276 24 C -0.141 4.141 25 C 0.139 3.861 26 H 0.069 0.931 27 C -0.161 4.161 28 C -0.113 4.113 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.364 0.636 44 H 0.261 0.739 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.067 0.933 49 H 0.057 0.943 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.298 0.304 -2.847 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.084 4.084 7 C -0.100 4.100 8 C -0.171 4.171 9 C 0.317 3.683 10 O -0.432 6.432 11 N -0.345 5.345 12 C -0.052 4.052 13 C 0.067 3.933 14 H 0.091 0.909 15 N -0.379 5.379 16 C -0.383 4.383 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.575 5.575 20 Si 0.714 3.286 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.179 4.179 25 C 0.035 3.965 26 H 0.087 0.913 27 C -0.219 4.219 28 C -0.131 4.131 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.198 0.802 44 H 0.071 0.929 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.076 0.924 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.706 0.563 -2.675 21.877 hybrid contribution 0.916 0.190 -1.130 1.467 sum -20.790 0.753 -3.805 21.149 Atomic orbital electron populations 1.21747 0.94835 1.01591 1.02169 1.20542 0.96068 0.92804 1.02882 1.19879 0.99515 0.96203 0.93275 1.21008 1.00019 0.94872 0.97485 1.21069 0.99422 0.94806 0.97707 1.19910 0.99142 0.96125 0.93220 1.20317 0.93384 0.92075 1.04241 1.21626 0.96352 0.94158 1.04928 1.20316 0.80662 0.91428 0.75864 1.90648 1.54682 1.46632 1.51243 1.48658 1.05142 1.08408 1.72260 1.23422 0.88316 0.91644 1.01835 1.21247 0.85372 0.89172 0.97505 0.90935 1.42673 1.24053 1.36913 1.34225 1.19055 1.05189 1.04659 1.09391 0.89003 1.24687 0.97755 0.97579 0.98661 1.69700 1.22599 1.23741 1.41487 0.86568 0.80052 0.78336 0.83646 1.20932 1.21635 1.20260 1.23024 0.93459 0.99226 1.02215 1.21453 0.92496 0.84028 0.98509 0.91293 1.22133 1.02613 0.99575 0.97573 1.21055 0.99573 0.94794 0.97666 1.20996 1.00140 0.94855 0.97464 0.92617 0.92480 0.92595 0.91081 0.91040 0.86227 0.86005 0.90296 0.90367 0.88877 0.88697 0.91292 0.90786 0.80221 0.92872 0.89881 0.90818 0.92006 0.91395 0.92363 0.86096 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.90 37.16 0.37 -0.60 16 2 C -0.09 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.09 -0.85 5.13 -104.63 -0.54 -1.39 16 4 C -0.12 -1.15 9.70 -39.58 -0.38 -1.53 16 5 C -0.11 -1.18 9.70 -39.58 -0.38 -1.56 16 6 C -0.08 -0.91 5.13 -104.62 -0.54 -1.45 16 7 C -0.06 -0.71 4.64 -27.88 -0.13 -0.83 16 8 C -0.13 -1.59 4.69 -27.89 -0.13 -1.72 16 9 C 0.53 7.86 7.63 -10.99 -0.08 7.78 16 10 O -0.55 -9.51 14.89 5.55 0.08 -9.43 16 11 N -0.61 -9.10 3.08 -163.01 -0.50 -9.60 16 12 C 0.07 1.18 6.38 -2.53 -0.02 1.16 16 13 C 0.18 3.13 3.69 -65.78 -0.24 2.89 16 14 H 0.07 1.33 8.13 -51.93 -0.42 0.90 16 15 N -0.74 -16.01 5.08 -51.35 -0.26 -16.27 16 16 C -0.25 -6.68 10.47 -15.06 -0.16 -6.84 16 17 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 18 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 19 N -0.93 -28.03 13.97 55.49 0.78 -27.26 16 20 Si 0.88 21.05 27.74 -169.99 -4.71 16.33 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.14 6.52 56.52 0.37 -5.78 16 24 C -0.14 -2.01 6.12 -24.90 -0.15 -2.17 16 25 C 0.14 1.95 3.49 -66.95 -0.23 1.71 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 C -0.16 -2.11 9.06 37.16 0.34 -1.77 16 28 C -0.11 -1.17 9.70 -39.58 -0.38 -1.56 16 29 C -0.12 -1.14 9.70 -39.59 -0.38 -1.53 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 38 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.12 7.85 -51.93 -0.41 0.71 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.07 1.18 7.48 -51.93 -0.39 0.79 16 43 H 0.36 7.80 5.57 -40.82 -0.23 7.57 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.08 1.09 7.83 -51.93 -0.41 0.69 16 46 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.98 6.77 -51.93 -0.35 0.63 16 49 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 51 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 409.80 15.07 6.18 6.18 Total: -1.00 -30.89 409.80 -10.72 -41.61 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.96 Total: 8.50 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -3.32 Total: -10.05 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.01 Total: -53.13 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.71 Total: 16.33 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.89 -10.72 -41.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989785220.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.577 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds