Wall clock time and date at job start Tue Mar 31 2020 16:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50694 * 109.47038 * 2 1 4 4 C 1.38235 * 120.00034 * 90.00575 * 3 2 1 5 5 C 1.38235 * 120.00136 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99904 * 359.94460 * 5 4 3 7 7 C 1.50705 * 120.00201 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46890 * 90.00141 * 7 6 5 9 9 C 1.50699 * 109.47186 * 179.97438 * 8 7 6 10 10 O 1.21285 * 119.99794 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00365 * 180.02562 * 9 8 7 12 12 C 1.47422 * 125.64527 * 0.03003 * 11 9 8 13 13 C 1.54917 * 104.83074 * 204.09182 * 12 11 9 14 14 H 1.08998 * 111.00524 * 81.06438 * 13 12 11 15 15 N 1.46501 * 111.00214 * 204.91534 * 13 12 11 16 16 C 1.36943 * 119.99850 * 273.54300 * 15 13 12 17 17 H 1.07995 * 120.00008 * 0.02562 * 16 15 13 18 18 C 1.38810 * 119.99393 * 180.02562 * 16 15 13 19 19 N 1.31623 * 119.99405 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00552 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46619 * 90.00049 * 20 18 16 22 22 H 1.48494 * 109.47052 * 210.00153 * 20 18 16 23 23 H 1.48493 * 109.47019 * 330.00543 * 20 18 16 24 24 C 1.55158 * 101.57978 * 322.98980 * 13 12 11 25 25 C 1.47020 * 125.65281 * 179.97438 * 11 9 8 26 26 H 1.09003 * 109.87996 * 298.39630 * 25 11 9 27 27 C 1.53005 * 110.01051 * 59.48427 * 25 11 9 28 28 C 1.38236 * 119.99843 * 0.28362 * 6 5 4 29 29 C 1.38232 * 120.00054 * 269.97564 * 3 2 1 30 30 H 1.08998 * 109.46915 * 59.99733 * 1 2 3 31 31 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47101 * 300.00008 * 1 2 3 33 33 H 1.08998 * 109.47072 * 239.99591 * 2 1 3 34 34 H 1.09006 * 109.46611 * 120.00161 * 2 1 3 35 35 H 1.08003 * 120.00235 * 359.96782 * 4 3 2 36 36 H 1.08003 * 119.99998 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.46769 * 330.00375 * 7 6 5 38 38 H 1.08993 * 109.47144 * 210.00600 * 7 6 5 39 39 H 1.09004 * 109.46897 * 60.00035 * 8 7 6 40 40 H 1.08993 * 109.47602 * 300.00179 * 8 7 6 41 41 H 1.08998 * 110.36873 * 85.25268 * 12 11 9 42 42 H 1.09005 * 110.36491 * 322.92676 * 12 11 9 43 43 H 0.97001 * 119.99967 * 93.54562 * 15 13 12 44 44 H 0.97002 * 119.99954 * 179.97438 * 19 18 16 45 45 H 1.09003 * 110.71801 * 153.86773 * 24 13 12 46 46 H 1.09003 * 110.71814 * 277.13679 * 24 13 12 47 47 H 1.09005 * 109.46851 * 177.88982 * 27 25 11 48 48 H 1.08999 * 109.47141 * 297.88909 * 27 25 11 49 49 H 1.09001 * 109.46987 * 57.88898 * 27 25 11 50 50 H 1.08003 * 119.99887 * 179.72051 * 28 6 5 51 51 H 1.07996 * 120.00261 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2629 2.0724 1.1971 5 6 2.7231 3.3759 1.1972 6 6 2.9540 4.0273 0.0000 7 6 3.4563 5.4482 0.0000 8 6 4.9863 5.4482 0.0005 9 6 5.4886 6.8689 -0.0001 10 8 4.7005 7.7908 -0.0005 11 7 6.8137 7.1153 -0.0003 12 6 7.8773 6.0944 -0.0006 13 6 9.1101 6.8061 0.6106 14 1 9.0524 6.8220 1.6989 15 7 10.3551 6.1777 0.1620 16 6 10.8622 5.1017 0.8406 17 1 10.3441 4.7163 1.7062 18 6 12.0422 4.5067 0.4158 19 7 12.5293 3.4722 1.0677 20 14 12.9379 5.1729 -1.0820 21 1 13.9074 6.2141 -0.6562 22 1 13.6635 4.0673 -1.7572 23 1 11.9548 5.7673 -2.0228 24 6 8.9664 8.2358 0.0251 25 6 7.4379 8.4464 -0.0015 26 1 7.1539 8.9881 -0.9038 27 6 6.9992 9.2315 1.2363 28 6 2.7190 3.3773 -1.1971 29 6 2.2632 2.0722 -1.1971 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.0825 1.5634 2.1325 36 1 2.9028 3.8851 2.1325 37 1 3.0927 5.9621 0.8898 38 1 3.0932 5.9619 -0.8901 39 1 5.3499 4.9342 -0.8893 40 1 5.3493 4.9345 0.8906 41 1 8.0923 5.7708 -1.0189 42 1 7.5865 5.2435 0.6155 43 1 10.8203 6.5237 -0.6157 44 1 13.3536 3.0561 0.7707 45 1 9.4455 8.9685 0.6746 46 1 9.3797 8.2833 -0.9824 47 1 7.4958 10.2018 1.2460 48 1 5.9192 9.3763 1.2108 49 1 7.2701 8.6756 2.1339 50 1 2.8950 3.8878 -2.1324 51 1 2.0832 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989785220.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:30 Heat of formation + Delta-G solvation = -33.212182 kcal Electronic energy + Delta-G solvation = -27677.851056 eV Core-core repulsion = 23961.672190 eV Total energy + Delta-G solvation = -3716.178865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.34119 -40.40212 -38.90541 -36.18626 -35.95203 -33.73323 -33.47044 -32.55327 -31.80082 -30.41422 -29.63805 -26.77914 -26.20464 -25.39723 -23.73709 -23.62031 -22.66390 -21.67910 -21.20742 -20.01097 -19.61145 -18.21945 -17.27782 -16.90692 -16.83376 -16.57709 -16.26500 -15.93026 -15.69022 -15.28261 -14.85085 -14.66661 -14.61750 -14.55069 -14.37155 -14.24948 -14.06803 -14.03193 -13.78383 -13.39286 -13.23696 -13.17773 -13.08514 -12.86156 -12.66011 -12.43065 -12.33130 -12.28249 -12.04384 -11.92910 -11.89923 -11.80504 -11.65786 -11.62083 -11.47206 -11.06478 -10.79911 -9.80575 -9.70117 -9.39632 -9.33403 -8.00805 -5.36582 0.41093 0.51962 1.41705 1.44616 1.51582 1.60797 1.98112 2.50440 2.83724 3.27903 3.29964 3.67396 3.76304 3.86163 3.87545 3.92149 4.05514 4.07954 4.11142 4.16721 4.25435 4.32589 4.35884 4.41819 4.46216 4.51827 4.58407 4.61771 4.64070 4.70452 4.72494 4.80864 4.89391 4.93019 5.01127 5.06630 5.07626 5.09492 5.13034 5.21877 5.23414 5.25066 5.33515 5.38748 5.47180 5.54320 5.74065 5.75203 5.78604 6.14401 6.22495 6.53461 7.07501 7.14756 7.81398 8.00779 9.20052 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.002698 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.755270 B =10373.777802 C =12464.150395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.094 4.094 4 C -0.126 4.126 5 C -0.124 4.124 6 C -0.096 4.096 7 C -0.052 4.052 8 C -0.125 4.125 9 C 0.526 3.474 10 O -0.576 6.576 11 N -0.611 5.611 12 C 0.085 3.915 13 C 0.169 3.831 14 H 0.062 0.938 15 N -0.738 5.738 16 C -0.232 4.232 17 H 0.061 0.939 18 C -0.060 4.060 19 N -0.982 5.982 20 Si 0.952 3.048 21 H -0.279 1.279 22 H -0.301 1.301 23 H -0.248 1.248 24 C -0.127 4.127 25 C 0.135 3.865 26 H 0.076 0.924 27 C -0.154 4.154 28 C -0.122 4.122 29 C -0.125 4.125 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.370 0.630 44 H 0.258 0.742 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.052 0.948 49 H 0.051 0.949 50 H 0.130 0.870 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.013 1.173 -4.245 22.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.094 4.094 4 C -0.144 4.144 5 C -0.142 4.142 6 C -0.096 4.096 7 C -0.090 4.090 8 C -0.164 4.164 9 C 0.317 3.683 10 O -0.456 6.456 11 N -0.344 5.344 12 C -0.040 4.040 13 C 0.059 3.941 14 H 0.080 0.920 15 N -0.381 5.381 16 C -0.363 4.363 17 H 0.079 0.921 18 C -0.252 4.252 19 N -0.632 5.632 20 Si 0.779 3.221 21 H -0.205 1.205 22 H -0.228 1.228 23 H -0.172 1.172 24 C -0.165 4.165 25 C 0.032 3.968 26 H 0.094 0.906 27 C -0.212 4.212 28 C -0.140 4.140 29 C -0.143 4.143 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.204 0.796 44 H 0.066 0.934 45 H 0.117 0.883 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.148 0.852 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.473 1.483 -4.083 22.889 hybrid contribution 1.026 -0.077 -0.608 1.195 sum -21.448 1.406 -4.691 22.000 Atomic orbital electron populations 1.21726 0.94106 1.02368 1.01877 1.20590 0.96635 0.91563 1.03478 1.20194 0.98869 0.97209 0.93130 1.21256 0.99915 0.94808 0.98401 1.21251 0.99653 0.95316 0.97945 1.19909 1.00088 0.95896 0.93733 1.20187 0.92644 0.92470 1.03699 1.21622 0.96965 0.92477 1.05365 1.20723 0.80339 0.92165 0.75081 1.90639 1.55081 1.47602 1.52309 1.48683 1.05047 1.08539 1.72172 1.23109 0.87928 0.91546 1.01446 1.21388 0.84171 0.91277 0.97226 0.91976 1.42589 1.25457 1.35942 1.34069 1.18994 1.04307 1.04932 1.08036 0.92148 1.25481 0.99153 0.98289 1.02248 1.69882 1.23363 1.25997 1.43930 0.85459 0.79038 0.77336 0.80220 1.20527 1.22762 1.17188 1.22960 0.93759 0.96991 1.02814 1.21572 0.92186 0.83750 0.99262 0.90620 1.22075 1.01784 1.00565 0.96783 1.21251 0.99622 0.95262 0.97898 1.21258 0.99897 0.94788 0.98363 0.92857 0.91182 0.92943 0.90420 0.90535 0.84829 0.85391 0.90942 0.90767 0.88134 0.88371 0.91390 0.91155 0.79616 0.93363 0.88281 0.89829 0.89662 0.92911 0.92974 0.85179 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.90 71.98 0.71 -0.97 16 2 C -0.09 -1.16 6.06 29.85 0.18 -0.98 16 3 C -0.09 -1.70 5.13 -19.87 -0.10 -1.81 16 4 C -0.13 -2.39 9.70 22.27 0.22 -2.17 16 5 C -0.12 -2.55 9.70 22.27 0.22 -2.33 16 6 C -0.10 -2.05 5.13 -19.86 -0.10 -2.16 16 7 C -0.05 -1.16 4.64 29.85 0.14 -1.02 16 8 C -0.12 -2.95 4.69 29.85 0.14 -2.81 16 9 C 0.53 15.20 7.63 87.66 0.67 15.87 16 10 O -0.58 -19.39 14.89 -3.05 -0.05 -19.44 16 11 N -0.61 -17.33 3.08 -788.04 -2.43 -19.76 16 12 C 0.09 2.63 6.38 86.86 0.55 3.18 16 13 C 0.17 5.68 3.69 46.39 0.17 5.85 16 14 H 0.06 2.23 8.13 -2.39 -0.02 2.21 16 15 N -0.74 -30.94 5.08 -316.36 -1.61 -32.55 16 16 C -0.23 -12.26 10.47 84.03 0.88 -11.38 16 17 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 18 C -0.06 -3.35 5.50 84.86 0.47 -2.89 16 19 N -0.98 -60.67 13.97 21.65 0.30 -60.36 16 20 Si 0.95 42.94 27.74 68.60 1.90 44.84 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 23 H -0.25 -9.85 6.52 99.48 0.65 -9.20 16 24 C -0.13 -3.28 6.12 31.78 0.19 -3.08 16 25 C 0.14 3.50 3.49 45.34 0.16 3.66 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 27 C -0.15 -3.74 9.06 71.98 0.65 -3.09 16 28 C -0.12 -2.45 9.70 22.27 0.22 -2.23 16 29 C -0.13 -2.31 9.70 22.27 0.22 -2.10 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 34 H 0.08 0.96 8.09 -2.38 -0.02 0.94 16 35 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.07 1.69 8.04 -2.39 -0.02 1.67 16 38 H 0.07 1.69 8.04 -2.39 -0.02 1.67 16 39 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.10 2.27 7.85 -2.39 -0.02 2.25 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.07 2.21 7.48 -2.38 -0.02 2.19 16 43 H 0.37 14.78 5.57 -92.71 -0.52 14.26 16 44 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.10 2.28 7.83 -2.39 -0.02 2.26 16 46 H 0.08 2.05 8.00 -2.39 -0.02 2.03 16 47 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 48 H 0.05 1.46 6.77 -2.39 -0.02 1.44 16 49 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 51 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -66.51 409.80 4.01 -62.49 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.32 Total: 35.23 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 5.58 Total: -10.45 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -3.74 Total: -112.68 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.90 Total: 44.84 kcal Total: -66.51 4.01 -62.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989785220.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.282 kcal (2) G-P(sol) polarization free energy of solvation -66.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds