Wall clock time and date at job start Tue Mar 31 2020 16:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47323 * 2 1 4 4 C 1.38380 * 119.85199 * 264.98461 * 3 2 1 5 5 C 1.37940 * 120.14384 * 179.76238 * 4 3 2 6 6 C 1.39599 * 119.84944 * 0.52630 * 5 4 3 7 7 C 1.47847 * 120.14468 * 179.74515 * 6 5 4 8 8 O 1.21549 * 120.00054 * 155.25238 * 7 6 5 9 9 N 1.34776 * 119.99753 * 335.25906 * 7 6 5 10 10 C 1.47425 * 125.65109 * 354.20940 * 9 7 6 11 11 C 1.54909 * 104.83337 * 204.11086 * 10 9 7 12 12 H 1.09000 * 111.03911 * 81.07242 * 11 10 9 13 13 N 1.46504 * 111.00342 * 204.91742 * 11 10 9 14 14 C 1.36935 * 119.99473 * 267.19262 * 13 11 10 15 15 H 1.08001 * 120.00508 * 359.97438 * 14 13 11 16 16 C 1.38812 * 119.99783 * 179.72709 * 14 13 11 17 17 N 1.31611 * 120.00294 * 180.27560 * 16 14 13 18 18 Si 1.86808 * 119.99808 * 0.27280 * 16 14 13 19 19 H 1.48504 * 109.46864 * 90.00279 * 18 16 14 20 20 H 1.48497 * 109.46834 * 210.00045 * 18 16 14 21 21 H 1.48499 * 109.47034 * 330.00388 * 18 16 14 22 22 C 1.55162 * 101.58022 * 322.98894 * 11 10 9 23 23 C 1.47024 * 125.64716 * 174.18703 * 9 7 6 24 24 H 1.08998 * 109.88340 * 59.53773 * 23 9 7 25 25 C 1.53000 * 109.87972 * 298.37484 * 23 9 7 26 26 C 1.39556 * 119.71317 * 359.47366 * 6 5 4 27 27 C 1.37983 * 119.85140 * 0.25256 * 26 6 5 28 28 C 1.50695 * 119.92668 * 180.02562 * 27 26 6 29 29 C 1.52997 * 109.47098 * 264.99790 * 28 27 26 30 30 H 1.09002 * 109.46799 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46906 * 299.99526 * 1 2 3 32 32 H 1.09000 * 109.47040 * 60.00017 * 1 2 3 33 33 H 1.09007 * 109.47272 * 239.99932 * 2 1 3 34 34 H 1.08999 * 109.47766 * 120.00129 * 2 1 3 35 35 H 1.08001 * 119.93029 * 0.02562 * 4 3 2 36 36 H 1.07995 * 120.07384 * 180.27238 * 5 4 3 37 37 H 1.08997 * 110.36703 * 85.27000 * 10 9 7 38 38 H 1.08995 * 110.36456 * 322.94527 * 10 9 7 39 39 H 0.97000 * 120.00165 * 87.19463 * 13 11 10 40 40 H 0.96994 * 120.00552 * 180.02562 * 17 16 14 41 41 H 1.08998 * 110.72217 * 153.86894 * 22 11 10 42 42 H 1.09000 * 110.71911 * 276.95986 * 22 11 10 43 43 H 1.09002 * 109.47502 * 302.19100 * 25 23 9 44 44 H 1.08998 * 109.47391 * 62.19391 * 25 23 9 45 45 H 1.09006 * 109.47320 * 182.18975 * 25 23 9 46 46 H 1.07997 * 120.07590 * 180.27134 * 26 6 5 47 47 H 1.09004 * 109.47372 * 24.99652 * 28 27 26 48 48 H 1.09003 * 109.47266 * 144.99683 * 28 27 26 49 49 H 1.09001 * 109.46974 * 180.02562 * 29 28 27 50 50 H 1.08994 * 109.47303 * 299.99806 * 29 28 27 51 51 H 1.09004 * 109.46882 * 60.00300 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3609 2.0353 -1.1956 5 6 2.8167 3.3372 -1.2030 6 6 2.9566 4.0312 0.0001 7 6 3.4499 5.4250 0.0002 8 8 3.1643 6.1707 0.9165 9 7 4.2162 5.8686 -1.0159 10 6 4.7359 5.0455 -2.1231 11 6 5.9894 5.8038 -2.6264 12 1 6.8531 5.5944 -1.9954 13 7 6.2736 5.4776 -4.0261 14 6 7.1377 4.4597 -4.3300 15 1 7.6099 3.8976 -3.5379 16 6 7.4026 4.1468 -5.6562 17 7 8.2289 3.1649 -5.9483 18 14 6.5863 5.1195 -7.0263 19 1 7.4415 6.2784 -7.3879 20 1 6.4074 4.2466 -8.2142 21 1 5.2612 5.6067 -6.5659 22 6 5.5392 7.2815 -2.4802 23 6 4.6718 7.2538 -1.2041 24 1 5.2651 7.5687 -0.3456 25 6 3.4657 8.1796 -1.3746 26 6 2.6235 3.4057 1.2023 27 6 2.1633 2.1049 1.1952 28 6 1.8025 1.4280 2.4923 29 6 2.9987 0.6166 2.9941 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.2562 1.4957 -2.1253 36 1 3.0686 3.8170 -2.1371 37 1 3.9947 4.9678 -2.9184 38 1 5.0116 4.0547 -1.7621 39 1 5.8498 5.9827 -4.7376 40 1 8.4143 2.9465 -6.8750 41 1 6.4007 7.9358 -2.3468 42 1 4.9506 7.5925 -3.3432 43 1 2.8682 7.8456 -2.2228 44 1 2.8580 8.1550 -0.4700 45 1 3.8116 9.1979 -1.5522 46 1 2.7253 3.9386 2.1361 47 1 1.5378 2.1815 3.2341 48 1 0.9541 0.7628 2.3314 49 1 2.7375 0.1266 3.9321 50 1 3.2634 -0.1369 2.2525 51 1 3.8471 1.2818 3.1551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989868370.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:37 Heat of formation + Delta-G solvation = -6.055997 kcal Electronic energy + Delta-G solvation = -28840.144051 eV Core-core repulsion = 25125.142766 eV Total energy + Delta-G solvation = -3715.001285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.56379 -39.31132 -37.43115 -34.87585 -34.38922 -33.57323 -31.82740 -31.56938 -29.99682 -29.10961 -28.87974 -25.77699 -24.91668 -24.03358 -23.57908 -22.07061 -21.63516 -20.65375 -20.40819 -18.92253 -17.78232 -16.89381 -16.32477 -16.20698 -15.84717 -15.18259 -14.61750 -14.44260 -14.16786 -13.98551 -13.92549 -13.72847 -13.56532 -13.50436 -13.31583 -13.11525 -12.72710 -12.66457 -12.57935 -12.42035 -12.28105 -12.01248 -11.82329 -11.65485 -11.47544 -11.44240 -11.27932 -11.19724 -10.93951 -10.82619 -10.72581 -10.61620 -10.40365 -10.12468 -9.74446 -9.68557 -9.09245 -8.86176 -8.63890 -8.40204 -7.44128 -5.88593 -3.27070 0.91322 1.36219 2.90886 3.11912 3.28807 3.31968 3.38397 3.81629 4.47138 4.48734 4.54852 4.68332 4.76918 4.82144 4.92551 5.01107 5.08903 5.10464 5.12662 5.21387 5.22852 5.32976 5.34875 5.44038 5.46101 5.48328 5.51352 5.60307 5.63870 5.67866 5.69121 5.74439 5.81604 5.88628 5.90846 5.94424 5.95824 6.03231 6.05063 6.13477 6.19685 6.29790 6.33873 6.36739 6.38563 6.55591 6.61071 6.66949 6.90614 7.71482 7.85630 8.29490 8.32091 9.06213 9.78147 9.96110 11.28967 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010720 B = 0.003572 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.256242 B = 7835.823102 C = 9522.080718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.058 4.058 4 C -0.122 4.122 5 C -0.091 4.091 6 C -0.130 4.130 7 C 0.573 3.427 8 O -0.549 6.549 9 N -0.605 5.605 10 C 0.070 3.930 11 C 0.177 3.823 12 H 0.078 0.922 13 N -0.735 5.735 14 C -0.254 4.254 15 H 0.093 0.907 16 C 0.011 3.989 17 N -0.928 5.928 18 Si 0.883 3.117 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.276 1.276 22 C -0.141 4.141 23 C 0.139 3.861 24 H 0.075 0.925 25 C -0.160 4.160 26 C -0.059 4.059 27 C -0.094 4.094 28 C -0.085 4.085 29 C -0.149 4.149 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.142 0.858 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.364 0.636 40 H 0.261 0.739 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.129 0.871 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.574 -1.845 13.555 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 C -0.058 4.058 4 C -0.140 4.140 5 C -0.110 4.110 6 C -0.133 4.133 7 C 0.363 3.637 8 O -0.428 6.428 9 N -0.338 5.338 10 C -0.055 4.055 11 C 0.065 3.935 12 H 0.096 0.904 13 N -0.376 5.376 14 C -0.384 4.384 15 H 0.110 0.890 16 C -0.185 4.185 17 N -0.575 5.575 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.203 1.203 22 C -0.180 4.180 23 C 0.035 3.965 24 H 0.093 0.907 25 C -0.218 4.218 26 C -0.078 4.078 27 C -0.094 4.094 28 C -0.123 4.123 29 C -0.206 4.206 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.198 0.802 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.147 0.853 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.076 0.924 50 H 0.076 0.924 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.559 -1.677 14.064 20.312 hybrid contribution -0.492 0.589 -1.300 1.510 sum -15.051 -1.088 12.764 19.765 Atomic orbital electron populations 1.21757 0.94664 1.01699 1.02311 1.20660 0.96228 0.92719 1.03284 1.19920 0.97295 0.95995 0.92607 1.21026 1.00235 0.94980 0.97750 1.21916 0.96257 0.94489 0.98296 1.19830 1.04761 0.94190 0.94521 1.17988 0.77860 0.86986 0.80824 1.90721 1.59013 1.57771 1.35303 1.48474 1.50074 1.10479 1.24760 1.23673 0.97874 0.96106 0.87867 1.21299 0.94202 0.90551 0.87482 0.90445 1.42662 1.53829 1.40612 1.00490 1.19079 1.17961 1.08024 0.93339 0.88967 1.24672 0.99027 0.97990 0.96841 1.69690 1.38540 1.31014 1.18217 0.86591 0.79365 0.79889 0.82880 1.20918 1.21619 1.20257 1.23087 0.99347 0.99280 0.96304 1.21506 0.95136 0.81595 0.98223 0.90660 1.22124 0.98274 0.99003 1.02432 1.21029 0.95784 0.93659 0.97350 1.19625 1.00994 0.93953 0.94826 1.20574 0.98732 0.99253 0.93701 1.21778 0.97998 1.00077 1.00751 0.92350 0.92463 0.92440 0.90762 0.90488 0.85430 0.84073 0.91233 0.90267 0.80219 0.92861 0.89947 0.90611 0.92593 0.91694 0.91732 0.85268 0.91073 0.90642 0.92437 0.92357 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.72 37.16 0.36 -0.76 16 2 C -0.09 -0.80 5.37 -27.88 -0.15 -0.95 16 3 C -0.06 -0.65 5.14 -104.53 -0.54 -1.19 16 4 C -0.12 -1.51 9.66 -39.64 -0.38 -1.89 16 5 C -0.09 -1.27 8.08 -39.18 -0.32 -1.59 16 6 C -0.13 -1.94 5.67 -104.97 -0.59 -2.54 16 7 C 0.57 9.54 7.39 -12.33 -0.09 9.45 16 8 O -0.55 -10.31 15.88 5.32 0.08 -10.22 16 9 N -0.60 -9.47 3.06 -164.12 -0.50 -9.97 16 10 C 0.07 1.14 4.69 -2.53 -0.01 1.13 16 11 C 0.18 3.12 3.71 -65.78 -0.24 2.87 16 12 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 13 N -0.73 -15.88 5.05 -51.35 -0.26 -16.13 16 14 C -0.25 -6.70 10.44 -15.06 -0.16 -6.85 16 15 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 16 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 17 N -0.93 -27.90 13.97 55.49 0.78 -27.12 16 18 Si 0.88 20.88 27.74 -169.99 -4.72 16.17 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.08 6.51 56.52 0.37 -5.71 16 22 C -0.14 -2.04 6.12 -24.89 -0.15 -2.19 16 23 C 0.14 1.99 3.43 -66.95 -0.23 1.76 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 25 C -0.16 -2.09 9.10 37.16 0.34 -1.75 16 26 C -0.06 -0.80 9.22 -39.18 -0.36 -1.16 16 27 C -0.09 -1.08 5.13 -104.68 -0.54 -1.62 16 28 C -0.09 -0.75 5.38 -27.89 -0.15 -0.90 16 29 C -0.15 -1.23 9.72 37.16 0.36 -0.87 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.43 6.79 -51.93 -0.35 0.08 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 34 H 0.08 0.61 5.59 -51.93 -0.29 0.32 16 35 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.14 1.98 4.62 -52.49 -0.24 1.74 16 37 H 0.07 1.13 6.82 -51.93 -0.35 0.77 16 38 H 0.08 1.34 6.85 -51.93 -0.36 0.98 16 39 H 0.36 7.73 5.62 -40.82 -0.23 7.50 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.06 7.72 -51.93 -0.40 0.66 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.94 7.10 -51.93 -0.37 0.57 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.13 1.71 7.84 -52.49 -0.41 1.30 16 47 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 48 H 0.08 0.58 5.59 -51.93 -0.29 0.29 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.06 0.48 6.79 -51.93 -0.35 0.13 16 51 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 394.97 15.07 5.95 5.95 Total: -1.00 -30.82 394.97 -9.92 -40.74 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -8.30 Total: 9.42 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.95 Total: -8.83 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.01 Total: -53.23 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.72 Total: 16.17 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.82 -9.92 -40.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989868370.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.682 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds