Wall clock time and date at job start Tue Mar 31 2020 16:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47323 * 2 1 4 4 C 1.38380 * 119.85199 * 264.98461 * 3 2 1 5 5 C 1.37940 * 120.14384 * 179.76238 * 4 3 2 6 6 C 1.39599 * 119.84944 * 0.52630 * 5 4 3 7 7 C 1.47847 * 120.14468 * 179.74515 * 6 5 4 8 8 O 1.21549 * 120.00054 * 155.25238 * 7 6 5 9 9 N 1.34776 * 119.99753 * 335.25906 * 7 6 5 10 10 C 1.47425 * 125.65109 * 354.20940 * 9 7 6 11 11 C 1.54909 * 104.83337 * 204.11086 * 10 9 7 12 12 H 1.09000 * 111.03911 * 81.07242 * 11 10 9 13 13 N 1.46504 * 111.00342 * 204.91742 * 11 10 9 14 14 C 1.36935 * 119.99473 * 267.19262 * 13 11 10 15 15 H 1.08001 * 120.00508 * 359.97438 * 14 13 11 16 16 C 1.38812 * 119.99783 * 179.72709 * 14 13 11 17 17 N 1.31611 * 120.00294 * 180.27560 * 16 14 13 18 18 Si 1.86808 * 119.99808 * 0.27280 * 16 14 13 19 19 H 1.48504 * 109.46864 * 90.00279 * 18 16 14 20 20 H 1.48497 * 109.46834 * 210.00045 * 18 16 14 21 21 H 1.48499 * 109.47034 * 330.00388 * 18 16 14 22 22 C 1.55162 * 101.58022 * 322.98894 * 11 10 9 23 23 C 1.47024 * 125.64716 * 174.18703 * 9 7 6 24 24 H 1.08998 * 109.88340 * 59.53773 * 23 9 7 25 25 C 1.53000 * 109.87972 * 298.37484 * 23 9 7 26 26 C 1.39556 * 119.71317 * 359.47366 * 6 5 4 27 27 C 1.37983 * 119.85140 * 0.25256 * 26 6 5 28 28 C 1.50695 * 119.92668 * 180.02562 * 27 26 6 29 29 C 1.52997 * 109.47098 * 264.99790 * 28 27 26 30 30 H 1.09002 * 109.46799 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46906 * 299.99526 * 1 2 3 32 32 H 1.09000 * 109.47040 * 60.00017 * 1 2 3 33 33 H 1.09007 * 109.47272 * 239.99932 * 2 1 3 34 34 H 1.08999 * 109.47766 * 120.00129 * 2 1 3 35 35 H 1.08001 * 119.93029 * 0.02562 * 4 3 2 36 36 H 1.07995 * 120.07384 * 180.27238 * 5 4 3 37 37 H 1.08997 * 110.36703 * 85.27000 * 10 9 7 38 38 H 1.08995 * 110.36456 * 322.94527 * 10 9 7 39 39 H 0.97000 * 120.00165 * 87.19463 * 13 11 10 40 40 H 0.96994 * 120.00552 * 180.02562 * 17 16 14 41 41 H 1.08998 * 110.72217 * 153.86894 * 22 11 10 42 42 H 1.09000 * 110.71911 * 276.95986 * 22 11 10 43 43 H 1.09002 * 109.47502 * 302.19100 * 25 23 9 44 44 H 1.08998 * 109.47391 * 62.19391 * 25 23 9 45 45 H 1.09006 * 109.47320 * 182.18975 * 25 23 9 46 46 H 1.07997 * 120.07590 * 180.27134 * 26 6 5 47 47 H 1.09004 * 109.47372 * 24.99652 * 28 27 26 48 48 H 1.09003 * 109.47266 * 144.99683 * 28 27 26 49 49 H 1.09001 * 109.46974 * 180.02562 * 29 28 27 50 50 H 1.08994 * 109.47303 * 299.99806 * 29 28 27 51 51 H 1.09004 * 109.46882 * 60.00300 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3609 2.0353 -1.1956 5 6 2.8167 3.3372 -1.2030 6 6 2.9566 4.0312 0.0001 7 6 3.4499 5.4250 0.0002 8 8 3.1643 6.1707 0.9165 9 7 4.2162 5.8686 -1.0159 10 6 4.7359 5.0455 -2.1231 11 6 5.9894 5.8038 -2.6264 12 1 6.8531 5.5944 -1.9954 13 7 6.2736 5.4776 -4.0261 14 6 7.1377 4.4597 -4.3300 15 1 7.6099 3.8976 -3.5379 16 6 7.4026 4.1468 -5.6562 17 7 8.2289 3.1649 -5.9483 18 14 6.5863 5.1195 -7.0263 19 1 7.4415 6.2784 -7.3879 20 1 6.4074 4.2466 -8.2142 21 1 5.2612 5.6067 -6.5659 22 6 5.5392 7.2815 -2.4802 23 6 4.6718 7.2538 -1.2041 24 1 5.2651 7.5687 -0.3456 25 6 3.4657 8.1796 -1.3746 26 6 2.6235 3.4057 1.2023 27 6 2.1633 2.1049 1.1952 28 6 1.8025 1.4280 2.4923 29 6 2.9987 0.6166 2.9941 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.2562 1.4957 -2.1253 36 1 3.0686 3.8170 -2.1371 37 1 3.9947 4.9678 -2.9184 38 1 5.0116 4.0547 -1.7621 39 1 5.8498 5.9827 -4.7376 40 1 8.4143 2.9465 -6.8750 41 1 6.4007 7.9358 -2.3468 42 1 4.9506 7.5925 -3.3432 43 1 2.8682 7.8456 -2.2228 44 1 2.8580 8.1550 -0.4700 45 1 3.8116 9.1979 -1.5522 46 1 2.7253 3.9386 2.1361 47 1 1.5378 2.1815 3.2341 48 1 0.9541 0.7628 2.3314 49 1 2.7375 0.1266 3.9321 50 1 3.2634 -0.1369 2.2525 51 1 3.8471 1.2818 3.1551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989868370.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:36 Heat of formation + Delta-G solvation = -22.271457 kcal Electronic energy + Delta-G solvation = -28840.847206 eV Core-core repulsion = 25125.142766 eV Total energy + Delta-G solvation = -3715.704440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.74398 -40.37946 -38.79559 -36.13852 -35.79374 -34.35817 -33.54553 -32.90598 -30.91886 -30.55705 -29.92373 -26.97796 -25.99942 -25.32808 -24.82744 -23.20708 -22.53164 -21.97855 -21.59854 -20.17323 -19.65641 -18.10031 -17.59488 -17.27659 -16.85126 -16.51741 -16.15067 -15.61141 -15.54031 -15.10535 -14.92589 -14.84851 -14.65393 -14.58294 -14.40192 -14.32387 -14.15755 -13.79790 -13.66473 -13.47702 -13.26606 -13.15724 -12.97703 -12.87925 -12.78210 -12.59685 -12.30663 -12.13967 -12.10301 -12.06213 -11.92833 -11.84150 -11.68761 -11.53253 -11.45819 -11.09578 -10.89927 -9.93649 -9.73065 -9.59078 -9.33103 -8.01088 -5.37403 -0.14772 0.35696 1.41657 1.44847 1.51723 1.70245 1.88163 2.50094 2.75367 3.23007 3.28194 3.60467 3.72387 3.73590 3.83050 3.83792 3.90805 4.06083 4.11965 4.15632 4.24880 4.36415 4.42086 4.42402 4.46574 4.52100 4.52361 4.57375 4.67547 4.69715 4.75541 4.79292 4.85522 4.99024 5.01021 5.04493 5.05629 5.08681 5.09446 5.14956 5.21636 5.29972 5.32593 5.33227 5.39440 5.47600 5.48390 5.64145 5.77518 5.93967 6.21595 6.41274 7.02120 7.07442 7.79378 8.00108 9.19795 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010720 B = 0.003572 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.256242 B = 7835.823102 C = 9522.080718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.054 4.054 4 C -0.130 4.130 5 C -0.101 4.101 6 C -0.153 4.153 7 C 0.570 3.430 8 O -0.576 6.576 9 N -0.604 5.604 10 C 0.085 3.915 11 C 0.168 3.832 12 H 0.063 0.937 13 N -0.734 5.734 14 C -0.236 4.236 15 H 0.058 0.942 16 C -0.056 4.056 17 N -0.981 5.981 18 Si 0.952 3.048 19 H -0.279 1.279 20 H -0.299 1.299 21 H -0.246 1.246 22 C -0.126 4.126 23 C 0.134 3.866 24 H 0.075 0.925 25 C -0.152 4.152 26 C -0.070 4.070 27 C -0.092 4.092 28 C -0.084 4.084 29 C -0.147 4.147 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.142 0.858 36 H 0.136 0.864 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.371 0.629 40 H 0.258 0.742 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.089 0.911 46 H 0.125 0.875 47 H 0.075 0.925 48 H 0.093 0.907 49 H 0.076 0.924 50 H 0.058 0.942 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.616 -1.519 13.683 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 C -0.054 4.054 4 C -0.148 4.148 5 C -0.119 4.119 6 C -0.156 4.156 7 C 0.362 3.638 8 O -0.457 6.457 9 N -0.336 5.336 10 C -0.040 4.040 11 C 0.057 3.943 12 H 0.081 0.919 13 N -0.376 5.376 14 C -0.366 4.366 15 H 0.076 0.924 16 C -0.248 4.248 17 N -0.631 5.631 18 Si 0.779 3.221 19 H -0.205 1.205 20 H -0.226 1.226 21 H -0.171 1.171 22 C -0.164 4.164 23 C 0.032 3.968 24 H 0.093 0.907 25 C -0.210 4.210 26 C -0.089 4.089 27 C -0.092 4.092 28 C -0.121 4.121 29 C -0.205 4.205 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.159 0.841 36 H 0.153 0.847 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.205 0.795 40 H 0.067 0.933 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.108 0.892 46 H 0.143 0.857 47 H 0.094 0.906 48 H 0.111 0.889 49 H 0.095 0.905 50 H 0.077 0.923 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.634 -1.309 14.232 21.931 hybrid contribution 0.159 0.418 -1.194 1.275 sum -16.475 -0.891 13.038 21.029 Atomic orbital electron populations 1.21747 0.93573 1.02793 1.02081 1.20741 0.97036 0.90825 1.04202 1.20276 0.95882 0.97256 0.91977 1.21271 0.99998 0.94502 0.99001 1.21889 0.97080 0.95269 0.97663 1.19835 1.06490 0.93708 0.95544 1.18294 0.77568 0.87543 0.80435 1.90692 1.60204 1.58631 1.36219 1.48488 1.49761 1.11016 1.24330 1.23362 0.97200 0.95355 0.88122 1.21418 0.94264 0.93314 0.85271 0.91879 1.42532 1.53205 1.39601 1.02303 1.18992 1.17290 1.07946 0.92409 0.92414 1.25458 1.00296 0.99446 0.99585 1.69875 1.41112 1.33595 1.18484 0.85472 0.79658 0.78070 0.78924 1.20514 1.22638 1.17061 1.23007 1.00013 0.96715 0.96696 1.21656 0.95830 0.81170 0.98179 0.90715 1.22052 0.97281 1.00037 1.01584 1.21137 0.96379 0.94681 0.96748 1.19942 0.99757 0.93178 0.96327 1.20645 0.99550 0.99575 0.92303 1.21771 0.97193 0.99755 1.01732 0.90612 0.92292 0.93116 0.90252 0.89230 0.84051 0.84651 0.90692 0.91455 0.79484 0.93300 0.88277 0.89309 0.92434 0.93434 0.89174 0.85676 0.90644 0.88859 0.90497 0.92307 0.93762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.72 71.98 0.70 -1.13 16 2 C -0.09 -1.37 5.37 29.85 0.16 -1.21 16 3 C -0.05 -1.14 5.14 -19.81 -0.10 -1.24 16 4 C -0.13 -3.13 9.66 22.23 0.21 -2.92 16 5 C -0.10 -2.83 8.08 22.53 0.18 -2.65 16 6 C -0.15 -4.66 5.67 -20.09 -0.11 -4.78 16 7 C 0.57 19.31 7.39 86.79 0.64 19.95 16 8 O -0.58 -22.05 15.88 -3.87 -0.06 -22.11 16 9 N -0.60 -18.81 3.06 -791.44 -2.43 -21.24 16 10 C 0.09 2.75 4.69 86.85 0.41 3.16 16 11 C 0.17 5.81 3.71 46.38 0.17 5.99 16 12 H 0.06 2.37 8.09 -2.39 -0.02 2.35 16 13 N -0.73 -30.98 5.05 -316.36 -1.60 -32.57 16 14 C -0.24 -12.55 10.44 84.03 0.88 -11.67 16 15 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 16 C -0.06 -3.12 5.50 84.86 0.47 -2.65 16 17 N -0.98 -60.53 13.97 21.65 0.30 -60.23 16 18 Si 0.95 42.66 27.74 68.60 1.90 44.56 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.25 -9.69 6.51 99.48 0.65 -9.05 16 22 C -0.13 -3.34 6.12 31.78 0.19 -3.15 16 23 C 0.13 3.67 3.43 45.34 0.16 3.83 16 24 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 25 C -0.15 -3.67 9.10 71.98 0.66 -3.02 16 26 C -0.07 -1.93 9.22 22.53 0.21 -1.72 16 27 C -0.09 -2.03 5.13 -19.90 -0.10 -2.13 16 28 C -0.08 -1.32 5.38 29.85 0.16 -1.16 16 29 C -0.15 -2.17 9.72 71.98 0.70 -1.47 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.73 6.79 -2.39 -0.02 0.71 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 1.14 8.05 -2.38 -0.02 1.12 16 34 H 0.09 1.15 5.59 -2.39 -0.01 1.13 16 35 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 36 H 0.14 3.85 4.62 -2.91 -0.01 3.83 16 37 H 0.08 2.37 6.82 -2.39 -0.02 2.36 16 38 H 0.07 2.34 6.85 -2.39 -0.02 2.32 16 39 H 0.37 14.78 5.62 -92.71 -0.52 14.26 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.09 2.19 7.72 -2.39 -0.02 2.17 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.05 1.33 7.10 -2.39 -0.02 1.32 16 45 H 0.09 1.71 8.14 -2.38 -0.02 1.70 16 46 H 0.13 3.43 7.84 -2.91 -0.02 3.40 16 47 H 0.07 1.14 8.05 -2.39 -0.02 1.13 16 48 H 0.09 1.16 5.59 -2.39 -0.01 1.15 16 49 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.06 0.85 6.79 -2.39 -0.02 0.84 16 51 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -68.10 394.97 4.05 -64.06 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: 0.35 Total: 35.50 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 5.58 Total: -7.96 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -3.72 Total: -114.04 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.06 Total: -22.11 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.90 Total: 44.56 kcal Total: -68.10 4.05 -64.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989868370.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.784 kcal (2) G-P(sol) polarization free energy of solvation -68.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds