Wall clock time and date at job start Tue Mar 31 2020 16:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47452 * 2 1 4 4 C 1.38379 * 119.85537 * 265.00099 * 3 2 1 5 5 C 1.37934 * 120.14418 * 180.02562 * 4 3 2 6 6 C 1.39588 * 119.85561 * 359.97438 * 5 4 3 7 7 C 1.47852 * 120.14492 * 179.97438 * 6 5 4 8 8 O 1.21547 * 119.99914 * 7.19627 * 7 6 5 9 9 N 1.34775 * 120.00001 * 187.19786 * 7 6 5 10 10 C 1.47021 * 125.64740 * 354.41123 * 9 7 6 11 11 C 1.54325 * 107.40443 * 181.10332 * 10 9 7 12 12 H 1.09004 * 110.71767 * 263.75794 * 11 10 9 13 13 N 1.46497 * 110.72424 * 140.47813 * 11 10 9 14 14 C 1.36935 * 119.99945 * 86.45223 * 13 11 10 15 15 H 1.07996 * 119.99832 * 0.02562 * 14 13 11 16 16 C 1.38812 * 119.99914 * 180.02562 * 14 13 11 17 17 N 1.31616 * 119.99850 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00026 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46940 * 90.00030 * 18 16 14 20 20 H 1.48507 * 109.47306 * 209.99970 * 18 16 14 21 21 H 1.48504 * 109.47447 * 329.99812 * 18 16 14 22 22 C 1.55158 * 102.94082 * 22.11278 * 11 10 9 23 23 C 1.47742 * 125.82264 * 174.32147 * 9 7 6 24 24 H 1.08999 * 110.43169 * 274.70498 * 23 9 7 25 25 C 1.52994 * 110.29336 * 37.02315 * 23 9 7 26 26 C 1.39558 * 119.71045 * 0.24506 * 6 5 4 27 27 C 1.37978 * 119.85246 * 359.49881 * 26 6 5 28 28 C 1.50699 * 119.92840 * 180.25254 * 27 26 6 29 29 C 1.52996 * 109.47042 * 265.27947 * 28 27 26 30 30 H 1.08997 * 109.47079 * 300.00224 * 1 2 3 31 31 H 1.09001 * 109.46812 * 60.00098 * 1 2 3 32 32 H 1.08998 * 109.46957 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47521 * 240.00067 * 2 1 3 34 34 H 1.09000 * 109.47295 * 119.99684 * 2 1 3 35 35 H 1.08006 * 119.92441 * 359.97438 * 4 3 2 36 36 H 1.08002 * 120.07210 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.88660 * 61.60857 * 10 9 7 38 38 H 1.09003 * 109.88564 * 300.59960 * 10 9 7 39 39 H 0.96999 * 119.99897 * 266.45855 * 13 11 10 40 40 H 0.97008 * 119.99878 * 180.02562 * 17 16 14 41 41 H 1.09008 * 111.00327 * 82.56988 * 22 11 10 42 42 H 1.08999 * 111.00958 * 206.42432 * 22 11 10 43 43 H 1.08998 * 109.47775 * 175.37914 * 25 23 9 44 44 H 1.09001 * 109.46901 * 295.37930 * 25 23 9 45 45 H 1.09006 * 109.47209 * 55.37475 * 25 23 9 46 46 H 1.08006 * 120.07169 * 179.75432 * 26 6 5 47 47 H 1.09008 * 109.47131 * 25.27731 * 28 27 26 48 48 H 1.08996 * 109.47304 * 145.27253 * 28 27 26 49 49 H 1.09003 * 109.47112 * 180.02562 * 29 28 27 50 50 H 1.09000 * 109.47262 * 299.99719 * 29 28 27 51 51 H 1.08999 * 109.47716 * 60.00038 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0354 -1.1956 5 6 2.8216 3.3354 -1.2025 6 6 2.9561 4.0314 0.0001 7 6 3.4501 5.4249 0.0002 8 8 3.6156 6.0111 -1.0517 9 7 3.7169 6.0452 1.1666 10 6 3.4542 5.5003 2.5065 11 6 3.8933 6.5661 3.5326 12 1 4.9027 6.3637 3.8908 13 7 2.9482 6.6303 4.6501 14 6 3.0961 5.7899 5.7210 15 1 3.9097 5.0800 5.7420 16 6 2.2002 5.8504 6.7796 17 7 2.3427 5.0429 7.8092 18 14 0.7925 7.0777 6.7430 19 1 -0.3920 6.4533 6.1008 20 1 0.4492 7.4788 8.1310 21 1 1.2012 8.2768 5.9680 22 6 3.8570 7.8792 2.7068 23 6 4.3234 7.3842 1.3149 24 1 5.4107 7.3153 1.2817 25 6 3.8143 8.3218 0.2183 26 6 2.6277 3.4042 1.2027 27 6 2.1627 2.1051 1.1952 28 6 1.8021 1.4281 2.4924 29 6 2.9987 0.6174 2.9943 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2565 1.4956 -2.1253 36 1 3.0778 3.8139 -2.1362 37 1 4.0281 4.5854 2.6538 38 1 2.3902 5.2925 2.6202 39 1 2.2176 7.2681 4.6313 40 1 1.7164 5.0849 8.5488 41 1 2.8455 8.2828 2.6590 42 1 4.5510 8.6153 3.1125 43 1 4.2049 9.3252 0.3877 44 1 4.1505 7.9604 -0.7536 45 1 2.7248 8.3477 0.2392 46 1 2.7333 3.9359 2.1369 47 1 1.5370 2.1816 3.2341 48 1 0.9541 0.7626 2.3314 49 1 2.7377 0.1274 3.9323 50 1 3.2638 -0.1361 2.2527 51 1 3.8467 1.2829 3.1553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989868373.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:43 Heat of formation + Delta-G solvation = 12.286369 kcal Electronic energy + Delta-G solvation = -29381.688027 eV Core-core repulsion = 25667.482127 eV Total energy + Delta-G solvation = -3714.205900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.62894 -39.21818 -37.44626 -34.68633 -34.36920 -33.59554 -32.01712 -31.60451 -29.56035 -29.13144 -28.92362 -25.92578 -24.87719 -23.87602 -23.39323 -22.28508 -21.66307 -20.44472 -20.34019 -18.92015 -17.75294 -16.93618 -16.47245 -15.90826 -15.79238 -15.07609 -14.69435 -14.48826 -14.14412 -13.92031 -13.75021 -13.61478 -13.54722 -13.42438 -13.37808 -13.09594 -12.70384 -12.49296 -12.38138 -12.32524 -12.13364 -11.93185 -11.80940 -11.56602 -11.50913 -11.36770 -11.31098 -11.04859 -10.77311 -10.75478 -10.69109 -10.45882 -10.26421 -10.15236 -9.71322 -9.49425 -9.03898 -8.79878 -8.63461 -8.34946 -7.46013 -5.90317 -3.28720 0.93302 1.42683 2.96867 3.12425 3.28960 3.32134 3.38224 3.90755 4.47047 4.50556 4.65948 4.71803 4.87835 4.91082 4.96699 5.03132 5.08623 5.19063 5.26016 5.32384 5.32833 5.43857 5.44829 5.46136 5.50270 5.52633 5.62114 5.69224 5.72267 5.73468 5.78841 5.87093 5.89327 5.92691 6.00161 6.01999 6.06715 6.10265 6.17151 6.25504 6.29753 6.34035 6.36452 6.43003 6.48804 6.57972 6.67438 6.71747 6.97491 7.72336 7.83839 8.28119 8.35482 9.04591 9.77045 9.94989 11.26998 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008942 B = 0.004701 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.598956 B = 5954.813789 C = 8359.137837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.060 4.060 4 C -0.131 4.131 5 C -0.066 4.066 6 C -0.134 4.134 7 C 0.574 3.426 8 O -0.548 6.548 9 N -0.605 5.605 10 C 0.064 3.936 11 C 0.176 3.824 12 H 0.076 0.924 13 N -0.737 5.737 14 C -0.256 4.256 15 H 0.093 0.907 16 C 0.013 3.987 17 N -0.927 5.927 18 Si 0.880 3.120 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.276 1.276 22 C -0.140 4.140 23 C 0.137 3.863 24 H 0.076 0.924 25 C -0.159 4.159 26 C -0.116 4.116 27 C -0.084 4.084 28 C -0.091 4.091 29 C -0.146 4.146 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.365 0.635 40 H 0.261 0.739 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.170 0.830 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.060 0.940 50 H 0.051 0.949 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.237 -6.100 -15.634 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.060 4.060 4 C -0.149 4.149 5 C -0.085 4.085 6 C -0.137 4.137 7 C 0.364 3.636 8 O -0.428 6.428 9 N -0.339 5.339 10 C -0.061 4.061 11 C 0.064 3.936 12 H 0.094 0.906 13 N -0.379 5.379 14 C -0.385 4.385 15 H 0.111 0.889 16 C -0.184 4.184 17 N -0.573 5.573 18 Si 0.710 3.290 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.179 4.179 23 C 0.034 3.966 24 H 0.094 0.906 25 C -0.216 4.216 26 C -0.133 4.133 27 C -0.084 4.084 28 C -0.128 4.128 29 C -0.203 4.203 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.198 0.802 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.187 0.813 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.386 -5.994 -16.025 17.114 hybrid contribution -1.125 0.748 0.117 1.356 sum -0.739 -5.246 -15.908 16.767 Atomic orbital electron populations 1.21762 0.94625 1.01690 1.02449 1.20650 0.96323 0.92760 1.03050 1.19970 0.97288 0.95993 0.92747 1.20916 1.01517 0.94993 0.97492 1.21149 0.96217 0.93762 0.97398 1.19858 1.05184 0.94160 0.94465 1.17986 0.77426 0.85711 0.82434 1.90672 1.54614 1.66637 1.30888 1.48540 1.61159 1.18309 1.05853 1.23654 1.01433 0.99325 0.81672 1.21205 0.94685 0.91036 0.86682 0.90641 1.42736 1.32100 1.44138 1.18903 1.19057 1.11620 1.12931 0.94894 0.88911 1.24656 0.98719 0.98623 0.96367 1.69694 1.38725 1.39975 1.08927 0.86626 0.83463 0.81783 0.77095 1.20962 1.21590 1.20212 1.23192 1.02382 0.98655 0.93701 1.21942 0.97129 0.81957 0.95529 0.90601 1.22132 1.01432 0.98110 0.99939 1.22962 0.95408 0.94949 1.00010 1.19787 0.99685 0.94095 0.94839 1.20639 0.98680 0.99726 0.93804 1.21737 0.98076 0.99792 1.00677 0.92152 0.92608 0.92383 0.91188 0.90312 0.85853 0.85176 0.90902 0.89978 0.80177 0.92873 0.90673 0.89770 0.92400 0.89985 0.92782 0.81326 0.90108 0.90820 0.92070 0.92987 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.72 37.16 0.36 -0.91 16 2 C -0.09 -0.83 5.38 -27.88 -0.15 -0.98 16 3 C -0.06 -0.70 5.14 -104.53 -0.54 -1.24 16 4 C -0.13 -1.54 9.66 -39.64 -0.38 -1.92 16 5 C -0.07 -0.91 9.59 -39.19 -0.38 -1.28 16 6 C -0.13 -2.05 5.87 -104.97 -0.62 -2.66 16 7 C 0.57 9.59 7.65 -12.33 -0.09 9.49 16 8 O -0.55 -10.08 13.99 5.32 0.07 -10.00 16 9 N -0.61 -9.48 3.25 -168.03 -0.55 -10.03 16 10 C 0.06 1.04 4.62 -3.06 -0.01 1.02 16 11 C 0.18 3.01 3.59 -66.10 -0.24 2.78 16 12 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 13 N -0.74 -15.70 4.98 -51.65 -0.26 -15.96 16 14 C -0.26 -6.56 10.46 -15.06 -0.16 -6.71 16 15 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 16 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 17 N -0.93 -27.37 13.97 55.49 0.78 -26.59 16 18 Si 0.88 20.83 27.74 -169.99 -4.71 16.12 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.15 6.52 56.52 0.37 -5.78 16 22 C -0.14 -2.03 6.11 -24.58 -0.15 -2.18 16 23 C 0.14 1.94 3.80 -66.24 -0.25 1.69 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 25 C -0.16 -2.16 8.51 37.15 0.32 -1.85 16 26 C -0.12 -1.71 8.24 -39.18 -0.32 -2.03 16 27 C -0.08 -1.11 5.13 -104.68 -0.54 -1.64 16 28 C -0.09 -1.12 5.37 -27.89 -0.15 -1.27 16 29 C -0.15 -1.68 9.72 37.16 0.36 -1.32 16 30 H 0.06 0.56 6.79 -51.93 -0.35 0.21 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.55 8.05 -51.93 -0.42 0.14 16 34 H 0.08 0.70 5.59 -51.93 -0.29 0.41 16 35 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.13 1.72 7.67 -52.49 -0.40 1.32 16 37 H 0.07 1.15 6.74 -51.93 -0.35 0.80 16 38 H 0.08 1.42 6.61 -51.93 -0.34 1.07 16 39 H 0.36 7.77 5.57 -40.82 -0.23 7.54 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 1.11 7.92 -51.92 -0.41 0.70 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.25 6.11 -51.93 -0.32 0.93 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.17 2.59 2.74 -57.86 -0.16 2.43 16 47 H 0.08 1.11 8.05 -51.92 -0.42 0.69 16 48 H 0.07 0.79 5.59 -51.93 -0.29 0.50 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.05 0.53 6.79 -51.93 -0.35 0.18 16 51 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -29.88 390.64 -9.97 -39.85 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -8.15 Total: 11.47 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -3.03 Total: -10.75 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.03 Total: -52.58 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.00 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.71 Total: 16.12 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.88 -9.97 -39.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989868373.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.135 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds