Wall clock time and date at job start Tue Mar 31 2020 16:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47452 * 2 1 4 4 C 1.38379 * 119.85537 * 265.00099 * 3 2 1 5 5 C 1.37934 * 120.14418 * 180.02562 * 4 3 2 6 6 C 1.39588 * 119.85561 * 359.97438 * 5 4 3 7 7 C 1.47852 * 120.14492 * 179.97438 * 6 5 4 8 8 O 1.21547 * 119.99914 * 7.19627 * 7 6 5 9 9 N 1.34775 * 120.00001 * 187.19786 * 7 6 5 10 10 C 1.47021 * 125.64740 * 354.41123 * 9 7 6 11 11 C 1.54325 * 107.40443 * 181.10332 * 10 9 7 12 12 H 1.09004 * 110.71767 * 263.75794 * 11 10 9 13 13 N 1.46497 * 110.72424 * 140.47813 * 11 10 9 14 14 C 1.36935 * 119.99945 * 86.45223 * 13 11 10 15 15 H 1.07996 * 119.99832 * 0.02562 * 14 13 11 16 16 C 1.38812 * 119.99914 * 180.02562 * 14 13 11 17 17 N 1.31616 * 119.99850 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00026 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46940 * 90.00030 * 18 16 14 20 20 H 1.48507 * 109.47306 * 209.99970 * 18 16 14 21 21 H 1.48504 * 109.47447 * 329.99812 * 18 16 14 22 22 C 1.55158 * 102.94082 * 22.11278 * 11 10 9 23 23 C 1.47742 * 125.82264 * 174.32147 * 9 7 6 24 24 H 1.08999 * 110.43169 * 274.70498 * 23 9 7 25 25 C 1.52994 * 110.29336 * 37.02315 * 23 9 7 26 26 C 1.39558 * 119.71045 * 0.24506 * 6 5 4 27 27 C 1.37978 * 119.85246 * 359.49881 * 26 6 5 28 28 C 1.50699 * 119.92840 * 180.25254 * 27 26 6 29 29 C 1.52996 * 109.47042 * 265.27947 * 28 27 26 30 30 H 1.08997 * 109.47079 * 300.00224 * 1 2 3 31 31 H 1.09001 * 109.46812 * 60.00098 * 1 2 3 32 32 H 1.08998 * 109.46957 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47521 * 240.00067 * 2 1 3 34 34 H 1.09000 * 109.47295 * 119.99684 * 2 1 3 35 35 H 1.08006 * 119.92441 * 359.97438 * 4 3 2 36 36 H 1.08002 * 120.07210 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.88660 * 61.60857 * 10 9 7 38 38 H 1.09003 * 109.88564 * 300.59960 * 10 9 7 39 39 H 0.96999 * 119.99897 * 266.45855 * 13 11 10 40 40 H 0.97008 * 119.99878 * 180.02562 * 17 16 14 41 41 H 1.09008 * 111.00327 * 82.56988 * 22 11 10 42 42 H 1.08999 * 111.00958 * 206.42432 * 22 11 10 43 43 H 1.08998 * 109.47775 * 175.37914 * 25 23 9 44 44 H 1.09001 * 109.46901 * 295.37930 * 25 23 9 45 45 H 1.09006 * 109.47209 * 55.37475 * 25 23 9 46 46 H 1.08006 * 120.07169 * 179.75432 * 26 6 5 47 47 H 1.09008 * 109.47131 * 25.27731 * 28 27 26 48 48 H 1.08996 * 109.47304 * 145.27253 * 28 27 26 49 49 H 1.09003 * 109.47112 * 180.02562 * 29 28 27 50 50 H 1.09000 * 109.47262 * 299.99719 * 29 28 27 51 51 H 1.08999 * 109.47716 * 60.00038 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0354 -1.1956 5 6 2.8216 3.3354 -1.2025 6 6 2.9561 4.0314 0.0001 7 6 3.4501 5.4249 0.0002 8 8 3.6156 6.0111 -1.0517 9 7 3.7169 6.0452 1.1666 10 6 3.4542 5.5003 2.5065 11 6 3.8933 6.5661 3.5326 12 1 4.9027 6.3637 3.8908 13 7 2.9482 6.6303 4.6501 14 6 3.0961 5.7899 5.7210 15 1 3.9097 5.0800 5.7420 16 6 2.2002 5.8504 6.7796 17 7 2.3427 5.0429 7.8092 18 14 0.7925 7.0777 6.7430 19 1 -0.3920 6.4533 6.1008 20 1 0.4492 7.4788 8.1310 21 1 1.2012 8.2768 5.9680 22 6 3.8570 7.8792 2.7068 23 6 4.3234 7.3842 1.3149 24 1 5.4107 7.3153 1.2817 25 6 3.8143 8.3218 0.2183 26 6 2.6277 3.4042 1.2027 27 6 2.1627 2.1051 1.1952 28 6 1.8021 1.4281 2.4924 29 6 2.9987 0.6174 2.9943 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2565 1.4956 -2.1253 36 1 3.0778 3.8139 -2.1362 37 1 4.0281 4.5854 2.6538 38 1 2.3902 5.2925 2.6202 39 1 2.2176 7.2681 4.6313 40 1 1.7164 5.0849 8.5488 41 1 2.8455 8.2828 2.6590 42 1 4.5510 8.6153 3.1125 43 1 4.2049 9.3252 0.3877 44 1 4.1505 7.9604 -0.7536 45 1 2.7248 8.3477 0.2392 46 1 2.7333 3.9359 2.1369 47 1 1.5370 2.1816 3.2341 48 1 0.9541 0.7626 2.3314 49 1 2.7377 0.1274 3.9323 50 1 3.2638 -0.1361 2.2527 51 1 3.8467 1.2829 3.1553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989868373.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:42 Heat of formation + Delta-G solvation = -3.074385 kcal Electronic energy + Delta-G solvation = -29382.354119 eV Core-core repulsion = 25667.482127 eV Total energy + Delta-G solvation = -3714.871992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.82626 -40.31379 -38.80496 -36.09863 -35.66363 -34.57176 -33.52816 -33.05611 -30.61044 -30.56518 -30.03258 -27.14518 -25.97799 -25.40948 -24.53071 -23.46547 -22.72188 -21.80623 -21.46333 -20.14317 -19.63414 -18.12830 -17.74270 -17.04692 -16.83641 -16.47438 -16.18819 -15.75099 -15.58095 -15.08882 -14.94995 -14.82078 -14.62502 -14.53714 -14.43702 -14.38000 -14.11183 -13.66144 -13.61089 -13.37183 -13.22959 -13.16445 -13.01721 -12.90014 -12.81751 -12.50467 -12.32856 -12.23536 -12.12914 -12.02747 -11.83606 -11.77198 -11.66593 -11.55643 -11.39545 -11.00585 -10.65773 -9.83872 -9.81075 -9.50653 -9.35890 -8.00548 -5.35963 -0.15545 0.38523 1.40703 1.41749 1.48974 1.77756 1.88907 2.49242 2.80695 3.25793 3.28439 3.59143 3.68505 3.73393 3.76060 3.90794 3.94719 4.10055 4.13266 4.20498 4.26039 4.38779 4.41331 4.43161 4.46279 4.52768 4.54248 4.58785 4.64579 4.67552 4.76789 4.79583 4.86005 4.98065 5.04273 5.05697 5.06205 5.09457 5.11375 5.16433 5.23527 5.25897 5.32068 5.39697 5.43788 5.48006 5.52833 5.67968 5.78973 5.96641 6.22303 6.43416 7.05788 7.08633 7.80988 7.99718 9.19892 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008942 B = 0.004701 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.598956 B = 5954.813789 C = 8359.137837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.053 4.053 4 C -0.125 4.125 5 C -0.073 4.073 6 C -0.155 4.155 7 C 0.569 3.431 8 O -0.569 6.569 9 N -0.606 5.606 10 C 0.080 3.920 11 C 0.168 3.832 12 H 0.075 0.925 13 N -0.739 5.739 14 C -0.231 4.231 15 H 0.065 0.935 16 C -0.051 4.051 17 N -0.977 5.977 18 Si 0.942 3.058 19 H -0.283 1.283 20 H -0.299 1.299 21 H -0.250 1.250 22 C -0.127 4.127 23 C 0.134 3.866 24 H 0.089 0.911 25 C -0.149 4.149 26 C -0.129 4.129 27 C -0.093 4.093 28 C -0.089 4.089 29 C -0.143 4.143 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.155 0.845 36 H 0.132 0.868 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.368 0.632 40 H 0.257 0.743 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.041 0.959 46 H 0.156 0.844 47 H 0.056 0.944 48 H 0.091 0.909 49 H 0.064 0.936 50 H 0.070 0.930 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.220 -6.220 -17.623 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.054 4.054 4 C -0.142 4.142 5 C -0.092 4.092 6 C -0.158 4.158 7 C 0.361 3.639 8 O -0.451 6.451 9 N -0.338 5.338 10 C -0.045 4.045 11 C 0.058 3.942 12 H 0.093 0.907 13 N -0.381 5.381 14 C -0.362 4.362 15 H 0.083 0.917 16 C -0.244 4.244 17 N -0.627 5.627 18 Si 0.770 3.230 19 H -0.209 1.209 20 H -0.226 1.226 21 H -0.175 1.175 22 C -0.166 4.166 23 C 0.031 3.969 24 H 0.107 0.893 25 C -0.207 4.207 26 C -0.146 4.146 27 C -0.093 4.093 28 C -0.126 4.126 29 C -0.200 4.200 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.173 0.827 36 H 0.150 0.850 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.202 0.798 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.125 0.875 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.173 0.827 47 H 0.075 0.925 48 H 0.110 0.890 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.047 -6.083 -18.066 19.062 hybrid contribution -0.910 0.691 0.648 1.314 sum -0.957 -5.392 -17.417 18.258 Atomic orbital electron populations 1.21758 0.94049 1.02745 1.01876 1.20735 0.96669 0.90883 1.04366 1.20307 0.95823 0.97250 0.91982 1.21258 0.99972 0.94203 0.98806 1.21300 0.96432 0.94656 0.96811 1.19888 1.06774 0.93817 0.95351 1.18272 0.77128 0.86284 0.82259 1.90653 1.55757 1.67285 1.31427 1.48573 1.61005 1.18910 1.05323 1.23326 1.00562 0.98799 0.81828 1.21381 0.93610 0.93248 0.85971 0.90737 1.42677 1.33048 1.43464 1.18893 1.19006 1.09775 1.11893 0.95526 0.91659 1.25350 1.01705 1.00956 0.96356 1.69858 1.40222 1.42544 1.10041 0.85606 0.80218 0.80419 0.76718 1.20927 1.22594 1.17469 1.23130 1.03119 0.97360 0.92942 1.22123 0.97860 0.81294 0.95575 0.89277 1.22032 1.00625 0.99299 0.98718 1.22842 0.96621 0.95850 0.99323 1.19931 0.99737 0.93700 0.95915 1.20621 0.99618 0.99427 0.92909 1.21721 0.97085 0.99747 1.01474 0.93324 0.92620 0.90548 0.89101 0.89821 0.82706 0.85011 0.91120 0.91262 0.79831 0.93389 0.90659 0.87500 0.89671 0.91620 0.93947 0.82740 0.92491 0.89020 0.91670 0.91133 0.93965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.72 71.98 0.70 -1.41 16 2 C -0.09 -1.36 5.38 29.85 0.16 -1.20 16 3 C -0.05 -1.14 5.14 -19.81 -0.10 -1.25 16 4 C -0.12 -2.65 9.66 22.23 0.21 -2.43 16 5 C -0.07 -1.94 9.59 22.52 0.22 -1.72 16 6 C -0.16 -4.79 5.87 -20.09 -0.12 -4.90 16 7 C 0.57 19.13 7.65 86.79 0.66 19.80 16 8 O -0.57 -20.99 13.99 -3.86 -0.05 -21.04 16 9 N -0.61 -18.87 3.25 -803.81 -2.61 -21.48 16 10 C 0.08 2.62 4.62 86.73 0.40 3.02 16 11 C 0.17 5.66 3.59 46.18 0.17 5.83 16 12 H 0.07 2.56 8.12 -2.39 -0.02 2.54 16 13 N -0.74 -31.07 4.98 -317.33 -1.58 -32.65 16 14 C -0.23 -12.05 10.46 84.03 0.88 -11.17 16 15 H 0.07 3.72 8.06 -2.91 -0.02 3.69 16 16 C -0.05 -2.84 5.50 84.86 0.47 -2.37 16 17 N -0.98 -59.43 13.97 21.65 0.30 -59.13 16 18 Si 0.94 43.10 27.74 68.60 1.90 45.00 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 21 H -0.25 -10.24 6.52 99.48 0.65 -9.59 16 22 C -0.13 -3.40 6.11 31.99 0.20 -3.20 16 23 C 0.13 3.59 3.80 45.41 0.17 3.76 16 24 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 25 C -0.15 -3.84 8.51 71.98 0.61 -3.22 16 26 C -0.13 -3.87 8.24 22.53 0.19 -3.69 16 27 C -0.09 -2.41 5.13 -19.90 -0.10 -2.51 16 28 C -0.09 -2.17 5.37 29.85 0.16 -2.01 16 29 C -0.14 -3.26 9.72 71.98 0.70 -2.56 16 30 H 0.05 0.81 6.79 -2.39 -0.02 0.79 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.05 8.05 -2.39 -0.02 1.03 16 34 H 0.08 1.22 5.59 -2.39 -0.01 1.21 16 35 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 36 H 0.13 3.39 7.67 -2.91 -0.02 3.37 16 37 H 0.07 2.33 6.74 -2.39 -0.02 2.31 16 38 H 0.07 2.46 6.61 -2.39 -0.02 2.45 16 39 H 0.37 15.07 5.57 -92.71 -0.52 14.56 16 40 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 41 H 0.07 2.06 7.92 -2.38 -0.02 2.04 16 42 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.06 1.94 6.11 -2.39 -0.01 1.93 16 45 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 46 H 0.16 5.00 2.74 -7.96 -0.02 4.98 16 47 H 0.06 1.64 8.05 -2.38 -0.02 1.63 16 48 H 0.09 1.88 5.59 -2.39 -0.01 1.87 16 49 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.07 1.32 6.79 -2.39 -0.02 1.31 16 51 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -65.80 390.64 3.88 -61.93 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: 0.35 Total: 38.62 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 5.57 Total: -11.25 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -3.89 Total: -113.26 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.05 Total: -21.04 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.90 Total: 45.00 kcal Total: -65.80 3.88 -61.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989868373.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.855 kcal (2) G-P(sol) polarization free energy of solvation -65.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds