Wall clock time and date at job start Tue Mar 31 2020 16:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47356 * 2 1 4 4 C 1.38258 * 119.99534 * 265.23234 * 3 2 1 5 5 C 1.38211 * 119.99514 * 180.25429 * 4 3 2 6 6 C 1.38251 * 120.00390 * 359.78467 * 5 4 3 7 7 C 1.38211 * 119.99973 * 359.95910 * 6 5 4 8 8 C 1.38215 * 120.00305 * 84.99605 * 3 2 1 9 9 C 1.50698 * 119.99900 * 359.97438 * 8 3 2 10 10 C 1.50701 * 109.46845 * 84.72813 * 9 8 3 11 11 O 1.21277 * 120.00043 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99971 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99917 * 180.02562 * 12 10 9 14 14 H 1.08990 * 109.52714 * 325.08046 * 13 12 10 15 15 C 1.53044 * 109.49535 * 85.16187 * 13 12 10 16 16 C 1.53041 * 109.53246 * 181.31404 * 15 13 12 17 17 C 1.53188 * 109.31848 * 298.63138 * 16 15 13 18 18 N 1.46966 * 108.88279 * 54.55892 * 17 16 15 19 19 C 1.36935 * 120.65280 * 126.46988 * 18 17 16 20 20 H 1.08003 * 119.99813 * 221.25079 * 19 18 17 21 21 C 1.38817 * 120.00241 * 41.24561 * 19 18 17 22 22 N 1.31620 * 119.99935 * 214.86690 * 21 19 18 23 23 Si 1.86796 * 120.00163 * 34.86651 * 21 19 18 24 24 H 1.48500 * 109.46996 * 84.62722 * 23 21 19 25 25 H 1.48496 * 109.47555 * 204.62971 * 23 21 19 26 26 H 1.48509 * 109.47005 * 324.63156 * 23 21 19 27 27 C 1.46927 * 118.71757 * 306.64182 * 18 17 16 28 28 H 1.09000 * 109.58740 * 293.50278 * 27 18 17 29 29 C 1.53001 * 109.58588 * 173.21714 * 27 18 17 30 30 H 1.09001 * 109.46625 * 60.00200 * 1 2 3 31 31 H 1.08998 * 109.47455 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47481 * 300.00709 * 1 2 3 33 33 H 1.08993 * 109.47235 * 239.99157 * 2 1 3 34 34 H 1.09001 * 109.46625 * 119.99800 * 2 1 3 35 35 H 1.07999 * 120.00589 * 0.02562 * 4 3 2 36 36 H 1.08003 * 119.99783 * 179.76563 * 5 4 3 37 37 H 1.07997 * 120.00413 * 179.97438 * 6 5 4 38 38 H 1.07998 * 120.00341 * 180.02562 * 7 6 5 39 39 H 1.09006 * 109.47355 * 324.72881 * 9 8 3 40 40 H 1.08996 * 109.47251 * 204.72626 * 9 8 3 41 41 H 0.97000 * 119.99807 * 359.97438 * 12 10 9 42 42 H 1.08990 * 109.45994 * 301.33200 * 15 13 12 43 43 H 1.08998 * 109.46099 * 61.31332 * 15 13 12 44 44 H 1.09005 * 109.50233 * 58.58975 * 16 15 13 45 45 H 1.09001 * 109.49692 * 178.68184 * 16 15 13 46 46 H 1.08997 * 109.59334 * 174.42345 * 17 16 15 47 47 H 1.08997 * 109.58653 * 294.71215 * 17 16 15 48 48 H 0.97001 * 119.99998 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.47137 * 300.28977 * 29 27 18 50 50 H 1.09000 * 109.47039 * 180.28521 * 29 27 18 51 51 H 1.09005 * 109.46929 * 60.28859 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3566 2.0393 -1.1933 5 6 2.8224 3.3405 -1.1928 6 6 2.9598 4.0252 0.0003 7 6 2.6306 3.4087 1.1927 8 6 2.1644 2.1072 1.1924 9 6 1.8053 1.4350 2.4925 10 6 2.9819 0.6321 2.9845 11 8 4.0108 0.6085 2.3429 12 7 2.8907 -0.0597 4.1375 13 6 4.0347 -0.8398 4.6161 14 1 4.5693 -1.2621 3.7653 15 6 4.9758 0.0686 5.4108 16 6 6.1875 -0.7380 5.8834 17 6 5.7161 -1.8688 6.8031 18 7 4.7001 -2.6629 6.0982 19 6 4.8345 -4.0204 5.9780 20 1 4.5883 -4.5069 5.0457 21 6 5.2874 -4.7710 7.0543 22 7 6.0460 -5.8266 6.8477 23 14 4.8202 -4.2831 8.7958 24 1 3.4906 -4.8539 9.1299 25 1 5.8356 -4.8048 9.7454 26 1 4.7627 -2.8026 8.8966 27 6 3.5388 -1.9718 5.5214 28 1 2.9255 -1.5576 6.3217 29 6 2.7099 -2.9604 4.6991 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8898 34 1 1.8932 -0.5138 0.8900 35 1 2.2495 1.5044 -2.1254 36 1 3.0793 3.8224 -2.1246 37 1 3.3241 5.0419 0.0007 38 1 2.7376 3.9437 2.1248 39 1 0.9535 0.7730 2.3362 40 1 1.5464 2.1915 3.2332 41 1 2.0679 -0.0405 4.6509 42 1 5.3107 0.8888 4.7760 43 1 4.4479 0.4707 6.2755 44 1 6.7018 -1.1613 5.0206 45 1 6.8686 -0.0852 6.4293 46 1 6.5620 -2.5053 7.0629 47 1 5.2847 -1.4461 7.7104 48 1 6.3628 -6.3509 7.5998 49 1 3.3249 -3.3734 3.8996 50 1 1.8518 -2.4447 4.2680 51 1 2.3622 -3.7676 5.3439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993495702.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:51 Heat of formation + Delta-G solvation = -6.588381 kcal Electronic energy + Delta-G solvation = -29131.048005 eV Core-core repulsion = 25416.023635 eV Total energy + Delta-G solvation = -3715.024371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.35303 -39.17618 -37.66899 -34.45193 -34.29502 -32.85695 -32.56257 -31.69716 -30.05260 -29.57507 -27.70582 -26.18467 -24.85839 -23.98746 -22.75691 -21.86675 -20.82492 -20.73016 -20.09264 -19.44895 -17.01233 -16.66908 -16.34289 -16.19443 -15.83248 -15.17589 -14.79882 -14.56088 -14.37921 -14.02352 -13.83153 -13.65342 -13.59671 -13.45857 -13.20136 -13.09983 -13.00972 -12.50537 -12.24096 -12.07823 -11.95395 -11.90114 -11.81581 -11.41774 -11.39313 -11.16333 -10.92002 -10.80475 -10.76687 -10.58116 -10.38925 -10.33980 -10.07218 -9.85121 -9.60433 -9.49655 -8.87093 -8.72337 -8.65658 -8.36207 -6.75341 -6.10198 -3.41484 1.25167 1.32839 2.81774 3.32385 3.38522 3.49324 3.53647 3.77035 4.50604 4.55670 4.62560 4.78400 4.84209 4.89813 5.00131 5.01624 5.09499 5.21449 5.25658 5.28367 5.37194 5.38522 5.45537 5.48043 5.52118 5.63273 5.75012 5.79616 5.80154 5.90443 5.94855 6.00542 6.08916 6.11526 6.25089 6.33250 6.35147 6.38737 6.41665 6.47413 6.53984 6.57612 6.59528 6.69838 6.88754 6.90492 6.92895 7.01482 7.11682 7.73113 8.00837 8.38791 8.45787 8.97162 9.69305 10.17317 11.05059 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021447 B = 0.002855 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.236385 B = 9805.225470 C =10386.246155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.062 4.062 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.060 4.060 9 C -0.109 4.109 10 C 0.512 3.488 11 O -0.531 6.531 12 N -0.722 5.722 13 C 0.132 3.868 14 H 0.088 0.912 15 C -0.117 4.117 16 C -0.134 4.134 17 C 0.141 3.859 18 N -0.590 5.590 19 C -0.277 4.277 20 H 0.077 0.923 21 C 0.052 3.948 22 N -0.878 5.878 23 Si 0.843 3.157 24 H -0.288 1.288 25 H -0.297 1.297 26 H -0.260 1.260 27 C 0.164 3.836 28 H 0.028 0.972 29 C -0.133 4.133 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.395 0.605 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.025 0.975 48 H 0.264 0.736 49 H 0.057 0.943 50 H 0.038 0.962 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.573 17.830 -11.024 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.062 4.062 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.060 4.060 9 C -0.148 4.148 10 C 0.297 3.703 11 O -0.407 6.407 12 N -0.373 5.373 13 C 0.027 3.973 14 H 0.106 0.894 15 C -0.156 4.156 16 C -0.174 4.174 17 C 0.016 3.984 18 N -0.314 5.314 19 C -0.405 4.405 20 H 0.094 0.906 21 C -0.151 4.151 22 N -0.517 5.517 23 Si 0.670 3.330 24 H -0.215 1.215 25 H -0.224 1.224 26 H -0.185 1.185 27 C 0.057 3.943 28 H 0.046 0.954 29 C -0.191 4.191 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.229 0.771 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.042 0.958 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.057 0.943 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.712 17.604 -11.431 23.565 hybrid contribution -0.527 0.240 1.417 1.531 sum -11.239 17.845 -10.014 23.346 Atomic orbital electron populations 1.21769 0.94721 1.01897 1.01986 1.20580 0.95895 0.92822 1.03425 1.19682 0.98202 0.95688 0.92601 1.20977 1.00201 0.95182 0.97357 1.21083 0.99853 0.94882 0.97967 1.21039 1.00889 0.99921 0.92584 1.20957 0.98725 0.94548 0.98103 1.19117 0.99809 0.93928 0.93157 1.20778 0.98044 1.00097 0.95921 1.20389 0.89219 0.79795 0.80851 1.90732 1.31042 1.62600 1.56276 1.46137 1.17372 1.49932 1.23830 1.21688 0.86205 0.91504 0.97928 0.89370 1.21759 0.96892 0.97980 0.98981 1.22031 0.96590 0.97969 1.00794 1.21349 0.92323 0.92013 0.92734 1.44272 1.18755 1.03653 1.64741 1.18563 1.44200 0.80817 0.96893 0.90576 1.25563 0.96826 0.95024 0.97674 1.70085 1.29834 1.19904 1.31829 0.87364 0.78630 0.79788 0.87188 1.21533 1.22395 1.18494 1.20696 0.89400 0.91267 0.92955 0.95441 1.21773 0.97930 0.99217 1.00157 0.92584 0.92170 0.92572 0.90958 0.90764 0.86265 0.86340 0.86304 0.86344 0.87900 0.88318 0.77122 0.92816 0.92806 0.91745 0.92751 0.91375 0.95757 0.92654 0.92411 0.94325 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.72 37.16 0.36 -0.83 16 2 C -0.09 -0.94 5.38 -27.88 -0.15 -1.09 16 3 C -0.06 -0.71 5.13 -104.62 -0.54 -1.25 16 4 C -0.12 -1.27 9.68 -39.58 -0.38 -1.66 16 5 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 6 C -0.13 -1.29 10.05 -39.59 -0.40 -1.69 16 7 C -0.11 -1.16 9.68 -39.59 -0.38 -1.54 16 8 C -0.06 -0.69 4.37 -104.63 -0.46 -1.15 16 9 C -0.11 -1.09 5.16 -29.04 -0.15 -1.24 16 10 C 0.51 7.12 6.97 -10.98 -0.08 7.04 16 11 O -0.53 -9.74 15.70 5.56 0.09 -9.66 16 12 N -0.72 -9.60 4.58 -53.69 -0.25 -9.85 16 13 C 0.13 2.25 2.00 -67.81 -0.14 2.12 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 15 C -0.12 -1.97 5.46 -26.69 -0.15 -2.11 16 16 C -0.13 -2.45 6.08 -26.61 -0.16 -2.61 16 17 C 0.14 3.01 4.60 -3.69 -0.02 3.00 16 18 N -0.59 -13.49 2.47 -164.74 -0.41 -13.89 16 19 C -0.28 -7.39 8.43 -15.06 -0.13 -7.52 16 20 H 0.08 2.19 6.82 -52.48 -0.36 1.83 16 21 C 0.05 1.45 4.82 -17.43 -0.08 1.37 16 22 N -0.88 -25.97 13.97 55.49 0.78 -25.19 16 23 Si 0.84 20.90 27.40 -169.99 -4.66 16.24 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.26 -6.16 5.24 56.52 0.30 -5.86 16 27 C 0.16 3.08 3.03 -67.60 -0.20 2.87 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 29 C -0.13 -2.39 7.95 37.16 0.30 -2.09 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.42 6.79 -51.93 -0.35 0.07 16 33 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 34 H 0.07 0.89 6.40 -51.93 -0.33 0.55 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.10 0.86 5.63 -51.93 -0.29 0.56 16 40 H 0.10 0.76 8.05 -51.93 -0.42 0.35 16 41 H 0.40 4.11 8.61 -40.82 -0.35 3.76 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.07 1.58 7.03 -51.93 -0.36 1.22 16 47 H 0.02 0.52 6.70 -51.93 -0.35 0.17 16 48 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.06 1.13 7.40 -51.93 -0.38 0.75 16 50 H 0.04 0.55 7.79 -51.93 -0.40 0.15 16 51 H 0.06 1.27 7.69 -51.93 -0.40 0.87 16 LS Contribution 394.23 15.07 5.94 5.94 Total: -1.00 -32.12 394.23 -10.37 -42.49 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -8.71 Total: 3.91 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -3.15 Total: -9.99 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.12 Total: -48.93 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.66 Total: 16.24 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.12 -10.37 -42.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993495702.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.899 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds