Wall clock time and date at job start Tue Mar 31 2020 16:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47356 * 2 1 4 4 C 1.38258 * 119.99534 * 265.23234 * 3 2 1 5 5 C 1.38211 * 119.99514 * 180.25429 * 4 3 2 6 6 C 1.38251 * 120.00390 * 359.78467 * 5 4 3 7 7 C 1.38211 * 119.99973 * 359.95910 * 6 5 4 8 8 C 1.38215 * 120.00305 * 84.99605 * 3 2 1 9 9 C 1.50698 * 119.99900 * 359.97438 * 8 3 2 10 10 C 1.50701 * 109.46845 * 84.72813 * 9 8 3 11 11 O 1.21277 * 120.00043 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99971 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99917 * 180.02562 * 12 10 9 14 14 H 1.08990 * 109.52714 * 325.08046 * 13 12 10 15 15 C 1.53044 * 109.49535 * 85.16187 * 13 12 10 16 16 C 1.53041 * 109.53246 * 181.31404 * 15 13 12 17 17 C 1.53188 * 109.31848 * 298.63138 * 16 15 13 18 18 N 1.46966 * 108.88279 * 54.55892 * 17 16 15 19 19 C 1.36935 * 120.65280 * 126.46988 * 18 17 16 20 20 H 1.08003 * 119.99813 * 221.25079 * 19 18 17 21 21 C 1.38817 * 120.00241 * 41.24561 * 19 18 17 22 22 N 1.31620 * 119.99935 * 214.86690 * 21 19 18 23 23 Si 1.86796 * 120.00163 * 34.86651 * 21 19 18 24 24 H 1.48500 * 109.46996 * 84.62722 * 23 21 19 25 25 H 1.48496 * 109.47555 * 204.62971 * 23 21 19 26 26 H 1.48509 * 109.47005 * 324.63156 * 23 21 19 27 27 C 1.46927 * 118.71757 * 306.64182 * 18 17 16 28 28 H 1.09000 * 109.58740 * 293.50278 * 27 18 17 29 29 C 1.53001 * 109.58588 * 173.21714 * 27 18 17 30 30 H 1.09001 * 109.46625 * 60.00200 * 1 2 3 31 31 H 1.08998 * 109.47455 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47481 * 300.00709 * 1 2 3 33 33 H 1.08993 * 109.47235 * 239.99157 * 2 1 3 34 34 H 1.09001 * 109.46625 * 119.99800 * 2 1 3 35 35 H 1.07999 * 120.00589 * 0.02562 * 4 3 2 36 36 H 1.08003 * 119.99783 * 179.76563 * 5 4 3 37 37 H 1.07997 * 120.00413 * 179.97438 * 6 5 4 38 38 H 1.07998 * 120.00341 * 180.02562 * 7 6 5 39 39 H 1.09006 * 109.47355 * 324.72881 * 9 8 3 40 40 H 1.08996 * 109.47251 * 204.72626 * 9 8 3 41 41 H 0.97000 * 119.99807 * 359.97438 * 12 10 9 42 42 H 1.08990 * 109.45994 * 301.33200 * 15 13 12 43 43 H 1.08998 * 109.46099 * 61.31332 * 15 13 12 44 44 H 1.09005 * 109.50233 * 58.58975 * 16 15 13 45 45 H 1.09001 * 109.49692 * 178.68184 * 16 15 13 46 46 H 1.08997 * 109.59334 * 174.42345 * 17 16 15 47 47 H 1.08997 * 109.58653 * 294.71215 * 17 16 15 48 48 H 0.97001 * 119.99998 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.47137 * 300.28977 * 29 27 18 50 50 H 1.09000 * 109.47039 * 180.28521 * 29 27 18 51 51 H 1.09005 * 109.46929 * 60.28859 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3566 2.0393 -1.1933 5 6 2.8224 3.3405 -1.1928 6 6 2.9598 4.0252 0.0003 7 6 2.6306 3.4087 1.1927 8 6 2.1644 2.1072 1.1924 9 6 1.8053 1.4350 2.4925 10 6 2.9819 0.6321 2.9845 11 8 4.0108 0.6085 2.3429 12 7 2.8907 -0.0597 4.1375 13 6 4.0347 -0.8398 4.6161 14 1 4.5693 -1.2621 3.7653 15 6 4.9758 0.0686 5.4108 16 6 6.1875 -0.7380 5.8834 17 6 5.7161 -1.8688 6.8031 18 7 4.7001 -2.6629 6.0982 19 6 4.8345 -4.0204 5.9780 20 1 4.5883 -4.5069 5.0457 21 6 5.2874 -4.7710 7.0543 22 7 6.0460 -5.8266 6.8477 23 14 4.8202 -4.2831 8.7958 24 1 3.4906 -4.8539 9.1299 25 1 5.8356 -4.8048 9.7454 26 1 4.7627 -2.8026 8.8966 27 6 3.5388 -1.9718 5.5214 28 1 2.9255 -1.5576 6.3217 29 6 2.7099 -2.9604 4.6991 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8898 34 1 1.8932 -0.5138 0.8900 35 1 2.2495 1.5044 -2.1254 36 1 3.0793 3.8224 -2.1246 37 1 3.3241 5.0419 0.0007 38 1 2.7376 3.9437 2.1248 39 1 0.9535 0.7730 2.3362 40 1 1.5464 2.1915 3.2332 41 1 2.0679 -0.0405 4.6509 42 1 5.3107 0.8888 4.7760 43 1 4.4479 0.4707 6.2755 44 1 6.7018 -1.1613 5.0206 45 1 6.8686 -0.0852 6.4293 46 1 6.5620 -2.5053 7.0629 47 1 5.2847 -1.4461 7.7104 48 1 6.3628 -6.3509 7.5998 49 1 3.3249 -3.3734 3.8996 50 1 1.8518 -2.4447 4.2680 51 1 2.3622 -3.7676 5.3439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993495702.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:50 Heat of formation + Delta-G solvation = -24.758383 kcal Electronic energy + Delta-G solvation = -29131.835916 eV Core-core repulsion = 25416.023635 eV Total energy + Delta-G solvation = -3715.812281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.37281 -40.26299 -39.06962 -35.83127 -35.18568 -34.42325 -33.56687 -33.41001 -31.54679 -30.34518 -28.72496 -27.63542 -26.65514 -24.75165 -24.12239 -22.87114 -22.35117 -21.69894 -21.33902 -20.83407 -18.45941 -17.98698 -17.56097 -17.13247 -17.01084 -16.51810 -16.15777 -15.87762 -15.68958 -15.39802 -15.08011 -14.87135 -14.72141 -14.59463 -14.40172 -14.29951 -13.96660 -13.85279 -13.70451 -13.39688 -13.02076 -12.96213 -12.81487 -12.70125 -12.63381 -12.61958 -12.38277 -12.14544 -12.01976 -11.82751 -11.73612 -11.67927 -11.54845 -11.53273 -11.27234 -10.85232 -10.48578 -9.95737 -9.66069 -9.44697 -8.64400 -8.24080 -5.51777 0.45908 0.54503 1.40576 1.47142 1.55723 1.74615 2.23926 2.49662 2.91501 2.98190 3.46195 3.70227 3.87170 3.87889 3.98013 4.02434 4.12016 4.13214 4.18718 4.30237 4.31809 4.38217 4.46374 4.51329 4.56780 4.58550 4.67018 4.73662 4.74569 4.77821 4.79373 4.93264 5.00519 5.04620 5.07320 5.10103 5.11484 5.18812 5.23545 5.26181 5.28781 5.40986 5.42949 5.50429 5.61931 5.65291 5.66244 5.78358 5.95030 6.17791 6.27518 6.68903 7.01730 7.39444 7.66529 8.15862 8.95829 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021447 B = 0.002855 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.236385 B = 9805.225470 C =10386.246155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.079 4.079 4 C -0.135 4.135 5 C -0.126 4.126 6 C -0.136 4.136 7 C -0.118 4.118 8 C -0.079 4.079 9 C -0.098 4.098 10 C 0.514 3.486 11 O -0.579 6.579 12 N -0.709 5.709 13 C 0.147 3.853 14 H 0.047 0.953 15 C -0.109 4.109 16 C -0.127 4.127 17 C 0.138 3.862 18 N -0.605 5.605 19 C -0.262 4.262 20 H 0.039 0.961 21 C -0.001 4.001 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.304 1.304 26 H -0.237 1.237 27 C 0.161 3.839 28 H 0.054 0.946 29 C -0.126 4.126 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.131 0.869 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.415 0.585 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.039 0.961 45 H 0.082 0.918 46 H 0.041 0.959 47 H 0.039 0.961 48 H 0.263 0.737 49 H 0.027 0.973 50 H 0.079 0.921 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.808 21.054 -10.131 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 C -0.079 4.079 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.154 4.154 7 C -0.136 4.136 8 C -0.079 4.079 9 C -0.138 4.138 10 C 0.301 3.699 11 O -0.459 6.459 12 N -0.361 5.361 13 C 0.040 3.960 14 H 0.066 0.934 15 C -0.148 4.148 16 C -0.167 4.167 17 C 0.013 3.987 18 N -0.330 5.330 19 C -0.392 4.392 20 H 0.057 0.943 21 C -0.200 4.200 22 N -0.572 5.572 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.232 1.232 26 H -0.161 1.161 27 C 0.056 3.944 28 H 0.072 0.928 29 C -0.183 4.183 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.252 0.748 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.058 0.942 45 H 0.100 0.900 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.072 0.928 49 H 0.046 0.954 50 H 0.098 0.902 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.005 20.878 -10.524 26.754 hybrid contribution 0.201 -0.734 0.974 1.236 sum -12.804 20.144 -9.550 25.709 Atomic orbital electron populations 1.21736 0.92862 1.02507 1.02688 1.20558 0.97494 0.92237 1.02288 1.19926 0.98675 0.96134 0.93180 1.21248 1.00419 0.95821 0.97781 1.21409 0.99241 0.94759 0.99021 1.21377 1.00575 1.00968 0.92475 1.21260 0.98599 0.94683 0.99090 1.19353 1.00454 0.94433 0.93683 1.20792 0.96460 1.00517 0.95984 1.21054 0.89598 0.79195 0.80027 1.90721 1.33330 1.64224 1.57576 1.45906 1.17060 1.49108 1.24066 1.21201 0.87254 0.91477 0.96080 0.93430 1.21691 0.96124 0.97360 0.99631 1.21928 0.97734 0.97503 0.99506 1.21376 0.91259 0.92248 0.93769 1.44392 1.20808 1.02578 1.65184 1.18400 1.42568 0.82758 0.95438 0.94291 1.26094 0.97116 0.95406 1.01403 1.70189 1.32097 1.22110 1.32778 0.86316 0.77510 0.80622 0.81987 1.21693 1.23171 1.16098 1.20875 0.88297 0.91579 0.93691 0.92835 1.21694 0.98740 0.98951 0.98919 0.92085 0.91575 0.91655 0.91380 0.92613 0.85153 0.84284 0.84294 0.84921 0.85923 0.85170 0.74823 0.92760 0.90419 0.94193 0.89971 0.94033 0.94279 0.92827 0.95358 0.90244 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.72 71.98 0.70 -1.34 16 2 C -0.09 -1.78 5.38 29.85 0.16 -1.62 16 3 C -0.08 -1.75 5.13 -19.87 -0.10 -1.85 16 4 C -0.13 -2.76 9.68 22.27 0.22 -2.54 16 5 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 6 C -0.14 -2.53 10.05 22.27 0.22 -2.31 16 7 C -0.12 -2.37 9.68 22.27 0.22 -2.16 16 8 C -0.08 -1.68 4.37 -19.87 -0.09 -1.77 16 9 C -0.10 -1.69 5.16 29.10 0.15 -1.54 16 10 C 0.51 13.29 6.97 87.66 0.61 13.90 16 11 O -0.58 -21.10 15.70 -3.02 -0.05 -21.15 16 12 N -0.71 -16.92 4.58 -442.16 -2.02 -18.95 16 13 C 0.15 4.79 2.00 45.07 0.09 4.88 16 14 H 0.05 1.97 7.58 -2.39 -0.02 1.96 16 15 C -0.11 -3.39 5.46 30.62 0.17 -3.22 16 16 C -0.13 -4.47 6.08 30.67 0.19 -4.28 16 17 C 0.14 5.74 4.60 86.35 0.40 6.13 16 18 N -0.60 -27.45 2.47 -675.12 -1.67 -29.12 16 19 C -0.26 -14.41 8.43 84.03 0.71 -13.71 16 20 H 0.04 2.39 6.82 -2.91 -0.02 2.37 16 21 C 0.00 -0.07 4.82 84.86 0.41 0.34 16 22 N -0.93 -57.14 13.97 21.65 0.30 -56.84 16 23 Si 0.91 43.49 27.40 68.60 1.88 45.37 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 25 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 26 H -0.24 -10.33 5.24 99.48 0.52 -9.80 16 27 C 0.16 5.80 3.03 44.98 0.14 5.94 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 C -0.13 -4.44 7.95 71.98 0.57 -3.86 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.82 6.79 -2.39 -0.02 0.80 16 33 H 0.07 1.37 8.05 -2.39 -0.02 1.35 16 34 H 0.06 1.31 6.40 -2.39 -0.02 1.29 16 35 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 38 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 39 H 0.12 1.63 5.63 -2.38 -0.01 1.61 16 40 H 0.13 1.44 8.05 -2.39 -0.02 1.42 16 41 H 0.41 6.82 8.61 -92.71 -0.80 6.03 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.04 1.92 7.03 -2.39 -0.02 1.91 16 47 H 0.04 1.53 6.70 -2.39 -0.02 1.51 16 48 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 49 H 0.03 1.14 7.40 -2.39 -0.02 1.12 16 50 H 0.08 2.10 7.79 -2.39 -0.02 2.08 16 51 H 0.05 1.87 7.69 -2.38 -0.02 1.85 16 Total: -1.00 -73.27 394.23 3.35 -69.92 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -0.07 Total: 21.91 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 4.98 Total: -11.14 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -3.39 Total: -104.91 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.05 Total: -21.15 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.37 kcal Total: -73.27 3.35 -69.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993495702.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.165 kcal (2) G-P(sol) polarization free energy of solvation -73.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds