Wall clock time and date at job start Tue Mar 31 2020 16:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47302 * 2 1 4 4 C 1.38255 * 120.00351 * 265.25607 * 3 2 1 5 5 C 1.38217 * 120.00484 * 180.29389 * 4 3 2 6 6 C 1.38255 * 119.99499 * 359.70459 * 5 4 3 7 7 C 1.38216 * 120.00267 * 0.02562 * 6 5 4 8 8 C 1.38223 * 120.00235 * 84.99797 * 3 2 1 9 9 C 1.50701 * 119.99393 * 359.97438 * 8 3 2 10 10 C 1.50699 * 109.46630 * 84.73041 * 9 8 3 11 11 O 1.21280 * 120.00329 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99968 * 179.97438 * 10 9 8 13 13 C 1.46493 * 120.00340 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.52533 * 35.08290 * 13 12 10 15 15 C 1.53045 * 109.49705 * 275.00059 * 13 12 10 16 16 C 1.53043 * 109.53846 * 301.41343 * 15 13 12 17 17 C 1.53198 * 109.31086 * 298.63616 * 16 15 13 18 18 N 1.46926 * 108.77519 * 54.63503 * 17 16 15 19 19 C 1.36936 * 120.63156 * 126.36878 * 18 17 16 20 20 H 1.07990 * 120.00363 * 209.60027 * 19 18 17 21 21 C 1.38817 * 119.99905 * 29.59943 * 19 18 17 22 22 N 1.31623 * 119.99897 * 15.60872 * 21 19 18 23 23 Si 1.86797 * 120.00028 * 195.60435 * 21 19 18 24 24 H 1.48500 * 109.46905 * 265.65584 * 23 21 19 25 25 H 1.48500 * 109.47197 * 25.65260 * 23 21 19 26 26 H 1.48504 * 109.47167 * 145.65934 * 23 21 19 27 27 C 1.46923 * 118.73717 * 306.64173 * 18 17 16 28 28 H 1.09003 * 109.58889 * 293.56946 * 27 18 17 29 29 C 1.53002 * 109.58470 * 173.14539 * 27 18 17 30 30 H 1.08997 * 109.46855 * 60.00088 * 1 2 3 31 31 H 1.09004 * 109.46698 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47331 * 300.00010 * 1 2 3 33 33 H 1.09006 * 109.47382 * 239.99761 * 2 1 3 34 34 H 1.08996 * 109.47532 * 120.00223 * 2 1 3 35 35 H 1.08003 * 120.00090 * 0.02562 * 4 3 2 36 36 H 1.07994 * 119.99903 * 179.71869 * 5 4 3 37 37 H 1.08001 * 119.99883 * 180.02562 * 6 5 4 38 38 H 1.08004 * 119.99942 * 179.97438 * 7 6 5 39 39 H 1.09001 * 109.47518 * 324.73038 * 9 8 3 40 40 H 1.08998 * 109.47061 * 204.72334 * 9 8 3 41 41 H 0.97011 * 119.99368 * 359.97438 * 12 10 9 42 42 H 1.09001 * 109.45682 * 181.39507 * 15 13 12 43 43 H 1.08995 * 109.46152 * 61.43474 * 15 13 12 44 44 H 1.08989 * 109.49741 * 178.68506 * 16 15 13 45 45 H 1.09002 * 109.49906 * 58.58373 * 16 15 13 46 46 H 1.09003 * 109.58428 * 294.84727 * 17 16 15 47 47 H 1.09000 * 109.70183 * 174.49240 * 17 16 15 48 48 H 0.96998 * 119.99965 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.46926 * 60.00066 * 29 27 18 50 50 H 1.09002 * 109.47184 * 179.97438 * 29 27 18 51 51 H 1.09000 * 109.47487 * 300.00150 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3562 2.0395 -1.1932 5 6 2.8227 3.3406 -1.1927 6 6 2.9597 4.0253 0.0005 7 6 2.6307 3.4086 1.1930 8 6 2.1644 2.1072 1.1925 9 6 1.8053 1.4348 2.4925 10 6 2.9819 0.6320 2.9844 11 8 4.0105 0.6077 2.3423 12 7 2.8912 -0.0592 4.1380 13 6 4.0348 -0.8401 4.6159 14 1 4.9604 -0.3248 4.3597 15 6 4.0204 -2.2219 3.9581 16 6 2.7068 -2.9334 4.2903 17 6 2.6007 -3.1189 5.8073 18 7 2.7590 -1.8101 6.4560 19 6 1.8200 -1.3520 7.3412 20 1 1.6518 -0.2907 7.4490 21 6 1.0841 -2.2519 8.1000 22 7 1.4818 -3.5020 8.2070 23 14 -0.4703 -1.6886 8.9694 24 1 -0.1440 -1.3015 10.3654 25 1 -1.0426 -0.5205 8.2528 26 1 -1.4599 -2.7958 8.9811 27 6 3.9408 -0.9996 6.1323 28 1 4.8377 -1.4976 6.5008 29 6 3.8116 0.3787 6.7839 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.2487 1.5048 -2.1254 36 1 3.0799 3.8223 -2.1244 37 1 3.3239 5.0421 0.0009 38 1 2.7382 3.9434 2.1251 39 1 0.9536 0.7728 2.3362 40 1 1.5464 2.1912 3.2334 41 1 2.0685 -0.0395 4.6517 42 1 4.8574 -2.8112 4.3329 43 1 4.1099 -2.1106 2.8775 44 1 2.6873 -3.9078 3.8024 45 1 1.8684 -2.3326 3.9378 46 1 3.3860 -3.7933 6.1487 47 1 1.6257 -3.5361 6.0592 48 1 0.9674 -4.1309 8.7369 49 1 3.7363 0.2637 7.8652 50 1 4.6895 0.9783 6.5429 51 1 2.9174 0.8759 6.4082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993495704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:54 Heat of formation + Delta-G solvation = -8.180177 kcal Electronic energy + Delta-G solvation = -29707.574257 eV Core-core repulsion = 25992.480861 eV Total energy + Delta-G solvation = -3715.093396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.23720 -39.13387 -37.46641 -34.33402 -33.90013 -32.67850 -32.29908 -31.63746 -29.67562 -29.38817 -27.50956 -26.12333 -25.02524 -23.89160 -22.50669 -21.81872 -20.91562 -20.69339 -19.90771 -18.70359 -16.90689 -16.54271 -16.33000 -16.06666 -15.40915 -15.16291 -14.70428 -14.60864 -14.02932 -13.89066 -13.72906 -13.56888 -13.45072 -13.19964 -13.11178 -12.92913 -12.82433 -12.58947 -12.12482 -11.91130 -11.84579 -11.79466 -11.31894 -11.27145 -11.23380 -11.01283 -10.82624 -10.71497 -10.70617 -10.62168 -10.53313 -10.13686 -10.03391 -9.67839 -9.50711 -9.32015 -8.77656 -8.56352 -8.54759 -8.42928 -6.69955 -5.84484 -3.29493 1.35223 1.41591 3.01807 3.31716 3.39615 3.40365 3.55459 3.94200 4.42201 4.64853 4.72602 4.89561 4.95040 5.10413 5.20875 5.23376 5.29674 5.30917 5.36308 5.41954 5.49460 5.56953 5.58139 5.62578 5.63821 5.74626 5.84391 5.90238 5.95560 6.00690 6.10438 6.12196 6.21158 6.21505 6.33124 6.41141 6.48172 6.49808 6.52151 6.66406 6.67181 6.68362 6.77253 6.92692 6.95905 7.02063 7.12961 7.35391 7.63614 7.74779 8.05891 8.38984 8.67892 9.15064 9.78277 10.35738 11.23623 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.003319 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.832336 B = 8433.701229 C = 8566.608118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.062 4.062 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.126 4.126 7 C -0.106 4.106 8 C -0.054 4.054 9 C -0.111 4.111 10 C 0.511 3.489 11 O -0.546 6.546 12 N -0.702 5.702 13 C 0.136 3.864 14 H 0.074 0.926 15 C -0.120 4.120 16 C -0.139 4.139 17 C 0.172 3.828 18 N -0.586 5.586 19 C -0.256 4.256 20 H 0.070 0.930 21 C 0.006 3.994 22 N -0.899 5.899 23 Si 0.899 3.101 24 H -0.288 1.288 25 H -0.279 1.279 26 H -0.290 1.290 27 C 0.159 3.841 28 H 0.038 0.962 29 C -0.135 4.135 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.408 0.592 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.046 0.954 45 H 0.053 0.947 46 H 0.017 0.983 47 H 0.086 0.914 48 H 0.253 0.747 49 H 0.063 0.937 50 H 0.038 0.962 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 9.769 -15.003 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.062 4.062 4 C -0.138 4.138 5 C -0.140 4.140 6 C -0.145 4.145 7 C -0.124 4.124 8 C -0.055 4.055 9 C -0.150 4.150 10 C 0.296 3.704 11 O -0.424 6.424 12 N -0.354 5.354 13 C 0.029 3.971 14 H 0.092 0.908 15 C -0.159 4.159 16 C -0.178 4.178 17 C 0.046 3.954 18 N -0.309 5.309 19 C -0.386 4.386 20 H 0.088 0.912 21 C -0.193 4.193 22 N -0.543 5.543 23 Si 0.729 3.271 24 H -0.215 1.215 25 H -0.204 1.204 26 H -0.217 1.217 27 C 0.052 3.948 28 H 0.055 0.945 29 C -0.193 4.193 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.244 0.756 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.035 0.965 47 H 0.104 0.896 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.057 0.943 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.383 9.597 -15.320 18.082 hybrid contribution -1.099 0.133 0.790 1.360 sum -0.716 9.730 -14.530 17.502 Atomic orbital electron populations 1.21770 0.94707 1.01908 1.02036 1.20567 0.95942 0.92849 1.03235 1.19679 0.98254 0.95709 0.92592 1.20955 1.00380 0.95200 0.97276 1.21057 1.00161 0.94903 0.97894 1.21031 1.00985 0.99847 0.92590 1.20976 0.98705 0.94580 0.98108 1.19152 0.99247 0.93847 0.93234 1.20777 0.98260 1.00246 0.95755 1.20351 0.89036 0.79797 0.81174 1.90679 1.31100 1.64211 1.56412 1.46036 1.17983 1.48210 1.23160 1.21424 0.88433 0.90893 0.96333 0.90759 1.21763 0.98769 0.96081 0.99300 1.22129 0.96500 0.98421 1.00778 1.20789 1.01733 0.86641 0.86234 1.44139 1.20523 1.17720 1.48556 1.19137 1.12252 0.92134 1.15042 0.91241 1.25097 1.00242 0.96366 0.97595 1.70028 1.38410 1.03770 1.42097 0.86347 0.83401 0.77711 0.79657 1.21531 1.20412 1.21661 1.20631 0.91717 0.92501 0.89957 0.94483 1.21782 0.99917 0.95926 1.01647 0.92663 0.92214 0.92415 0.91175 0.90728 0.86397 0.86449 0.86371 0.86293 0.87939 0.88304 0.75587 0.92065 0.93197 0.93550 0.92859 0.96480 0.89623 0.93654 0.91810 0.94265 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.72 37.16 0.36 -1.07 16 2 C -0.09 -1.03 5.38 -27.89 -0.15 -1.18 16 3 C -0.06 -0.79 5.13 -104.62 -0.54 -1.32 16 4 C -0.12 -1.38 9.68 -39.58 -0.38 -1.76 16 5 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 6 C -0.13 -1.41 10.05 -39.58 -0.40 -1.80 16 7 C -0.11 -1.30 9.68 -39.59 -0.38 -1.68 16 8 C -0.05 -0.71 4.37 -104.62 -0.46 -1.17 16 9 C -0.11 -1.39 5.16 -29.04 -0.15 -1.54 16 10 C 0.51 8.04 6.97 -10.98 -0.08 7.97 16 11 O -0.55 -10.37 15.70 5.56 0.09 -10.28 16 12 N -0.70 -11.32 3.44 -53.91 -0.19 -11.51 16 13 C 0.14 2.38 2.32 -68.03 -0.16 2.22 16 14 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 15 C -0.12 -2.12 5.58 -26.69 -0.15 -2.27 16 16 C -0.14 -2.57 5.93 -26.61 -0.16 -2.73 16 17 C 0.17 3.84 5.29 -3.71 -0.02 3.82 16 18 N -0.59 -13.18 2.65 -165.03 -0.44 -13.61 16 19 C -0.26 -6.29 8.58 -15.06 -0.13 -6.42 16 20 H 0.07 1.65 6.22 -52.49 -0.33 1.32 16 21 C 0.01 0.16 4.94 -17.43 -0.09 0.07 16 22 N -0.90 -24.81 11.22 55.49 0.62 -24.18 16 23 Si 0.90 20.45 29.58 -169.99 -5.03 15.42 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.16 3.09 3.18 -67.82 -0.22 2.87 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 C -0.14 -2.40 7.72 37.16 0.29 -2.11 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.56 6.79 -51.93 -0.35 0.21 16 33 H 0.07 0.75 8.05 -51.93 -0.42 0.34 16 34 H 0.07 1.00 6.40 -51.93 -0.33 0.66 16 35 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 39 H 0.10 1.17 5.63 -51.93 -0.29 0.87 16 40 H 0.10 1.06 8.05 -51.93 -0.42 0.64 16 41 H 0.41 6.67 7.74 -40.82 -0.32 6.35 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.80 8.14 -51.94 -0.42 0.38 16 45 H 0.05 0.99 7.53 -51.93 -0.39 0.59 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 2.16 6.12 -51.93 -0.32 1.84 16 48 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 49 H 0.06 1.22 7.62 -51.93 -0.40 0.83 16 50 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.05 0.93 6.37 -51.93 -0.33 0.60 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -29.09 393.44 -10.71 -39.79 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -8.49 Total: 8.25 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -3.20 Total: -9.81 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.00 Total: -49.31 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.09 -10.71 -39.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993495704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.612 kcal (2) G-P(sol) polarization free energy of solvation -29.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds