Wall clock time and date at job start Tue Mar 31 2020 16:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47302 * 2 1 4 4 C 1.38255 * 120.00351 * 265.25607 * 3 2 1 5 5 C 1.38217 * 120.00484 * 180.29389 * 4 3 2 6 6 C 1.38255 * 119.99499 * 359.70459 * 5 4 3 7 7 C 1.38216 * 120.00267 * 0.02562 * 6 5 4 8 8 C 1.38223 * 120.00235 * 84.99797 * 3 2 1 9 9 C 1.50701 * 119.99393 * 359.97438 * 8 3 2 10 10 C 1.50699 * 109.46630 * 84.73041 * 9 8 3 11 11 O 1.21280 * 120.00329 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99968 * 179.97438 * 10 9 8 13 13 C 1.46493 * 120.00340 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.52533 * 35.08290 * 13 12 10 15 15 C 1.53045 * 109.49705 * 275.00059 * 13 12 10 16 16 C 1.53043 * 109.53846 * 301.41343 * 15 13 12 17 17 C 1.53198 * 109.31086 * 298.63616 * 16 15 13 18 18 N 1.46926 * 108.77519 * 54.63503 * 17 16 15 19 19 C 1.36936 * 120.63156 * 126.36878 * 18 17 16 20 20 H 1.07990 * 120.00363 * 209.60027 * 19 18 17 21 21 C 1.38817 * 119.99905 * 29.59943 * 19 18 17 22 22 N 1.31623 * 119.99897 * 15.60872 * 21 19 18 23 23 Si 1.86797 * 120.00028 * 195.60435 * 21 19 18 24 24 H 1.48500 * 109.46905 * 265.65584 * 23 21 19 25 25 H 1.48500 * 109.47197 * 25.65260 * 23 21 19 26 26 H 1.48504 * 109.47167 * 145.65934 * 23 21 19 27 27 C 1.46923 * 118.73717 * 306.64173 * 18 17 16 28 28 H 1.09003 * 109.58889 * 293.56946 * 27 18 17 29 29 C 1.53002 * 109.58470 * 173.14539 * 27 18 17 30 30 H 1.08997 * 109.46855 * 60.00088 * 1 2 3 31 31 H 1.09004 * 109.46698 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47331 * 300.00010 * 1 2 3 33 33 H 1.09006 * 109.47382 * 239.99761 * 2 1 3 34 34 H 1.08996 * 109.47532 * 120.00223 * 2 1 3 35 35 H 1.08003 * 120.00090 * 0.02562 * 4 3 2 36 36 H 1.07994 * 119.99903 * 179.71869 * 5 4 3 37 37 H 1.08001 * 119.99883 * 180.02562 * 6 5 4 38 38 H 1.08004 * 119.99942 * 179.97438 * 7 6 5 39 39 H 1.09001 * 109.47518 * 324.73038 * 9 8 3 40 40 H 1.08998 * 109.47061 * 204.72334 * 9 8 3 41 41 H 0.97011 * 119.99368 * 359.97438 * 12 10 9 42 42 H 1.09001 * 109.45682 * 181.39507 * 15 13 12 43 43 H 1.08995 * 109.46152 * 61.43474 * 15 13 12 44 44 H 1.08989 * 109.49741 * 178.68506 * 16 15 13 45 45 H 1.09002 * 109.49906 * 58.58373 * 16 15 13 46 46 H 1.09003 * 109.58428 * 294.84727 * 17 16 15 47 47 H 1.09000 * 109.70183 * 174.49240 * 17 16 15 48 48 H 0.96998 * 119.99965 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.46926 * 60.00066 * 29 27 18 50 50 H 1.09002 * 109.47184 * 179.97438 * 29 27 18 51 51 H 1.09000 * 109.47487 * 300.00150 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3562 2.0395 -1.1932 5 6 2.8227 3.3406 -1.1927 6 6 2.9597 4.0253 0.0005 7 6 2.6307 3.4086 1.1930 8 6 2.1644 2.1072 1.1925 9 6 1.8053 1.4348 2.4925 10 6 2.9819 0.6320 2.9844 11 8 4.0105 0.6077 2.3423 12 7 2.8912 -0.0592 4.1380 13 6 4.0348 -0.8401 4.6159 14 1 4.9604 -0.3248 4.3597 15 6 4.0204 -2.2219 3.9581 16 6 2.7068 -2.9334 4.2903 17 6 2.6007 -3.1189 5.8073 18 7 2.7590 -1.8101 6.4560 19 6 1.8200 -1.3520 7.3412 20 1 1.6518 -0.2907 7.4490 21 6 1.0841 -2.2519 8.1000 22 7 1.4818 -3.5020 8.2070 23 14 -0.4703 -1.6886 8.9694 24 1 -0.1440 -1.3015 10.3654 25 1 -1.0426 -0.5205 8.2528 26 1 -1.4599 -2.7958 8.9811 27 6 3.9408 -0.9996 6.1323 28 1 4.8377 -1.4976 6.5008 29 6 3.8116 0.3787 6.7839 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.2487 1.5048 -2.1254 36 1 3.0799 3.8223 -2.1244 37 1 3.3239 5.0421 0.0009 38 1 2.7382 3.9434 2.1251 39 1 0.9536 0.7728 2.3362 40 1 1.5464 2.1912 3.2334 41 1 2.0685 -0.0395 4.6517 42 1 4.8574 -2.8112 4.3329 43 1 4.1099 -2.1106 2.8775 44 1 2.6873 -3.9078 3.8024 45 1 1.8684 -2.3326 3.9378 46 1 3.3860 -3.7933 6.1487 47 1 1.6257 -3.5361 6.0592 48 1 0.9674 -4.1309 8.7369 49 1 3.7363 0.2637 7.8652 50 1 4.6895 0.9783 6.5429 51 1 2.9174 0.8759 6.4082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993495704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:54 Heat of formation + Delta-G solvation = -21.506520 kcal Electronic energy + Delta-G solvation = -29708.152131 eV Core-core repulsion = 25992.480861 eV Total energy + Delta-G solvation = -3715.671270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.39319 -40.29537 -38.90643 -35.56119 -35.17062 -34.04871 -33.55765 -33.20034 -31.17700 -30.33054 -28.61116 -27.62851 -26.79935 -24.73645 -23.90970 -23.00576 -22.37351 -21.88890 -21.01654 -20.24242 -18.25145 -18.13308 -17.34230 -17.08302 -16.94939 -16.47513 -15.95069 -15.85888 -15.62784 -15.23560 -15.00261 -14.69380 -14.66340 -14.47677 -14.32066 -14.20261 -13.92794 -13.82531 -13.51607 -13.05132 -12.91919 -12.87035 -12.79166 -12.68240 -12.63591 -12.40588 -12.31947 -12.18446 -12.11547 -11.90772 -11.67413 -11.65359 -11.52984 -11.34645 -11.01613 -10.80284 -10.48096 -9.84588 -9.64734 -9.43284 -8.58989 -7.79830 -5.26137 0.47811 0.55640 1.50852 1.54005 1.61470 1.78498 2.39540 2.56052 2.96916 3.36972 3.60651 3.72840 3.88810 3.96758 4.04058 4.08582 4.13484 4.19755 4.23657 4.32934 4.37918 4.40916 4.50922 4.56652 4.59270 4.67453 4.67865 4.74550 4.78540 4.80365 4.96111 5.00454 5.03831 5.06321 5.09574 5.14549 5.19321 5.24895 5.27277 5.36023 5.40222 5.47579 5.57078 5.63268 5.66250 5.70229 5.77004 5.80386 5.82522 6.18895 6.46309 6.76520 7.21531 7.41017 7.91600 8.45327 9.27123 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.003319 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.832336 B = 8433.701229 C = 8566.608118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.079 4.079 4 C -0.131 4.131 5 C -0.125 4.125 6 C -0.134 4.134 7 C -0.121 4.121 8 C -0.074 4.074 9 C -0.103 4.103 10 C 0.515 3.485 11 O -0.578 6.578 12 N -0.700 5.700 13 C 0.146 3.854 14 H 0.075 0.925 15 C -0.114 4.114 16 C -0.124 4.124 17 C 0.180 3.820 18 N -0.595 5.595 19 C -0.246 4.246 20 H 0.082 0.918 21 C -0.050 4.050 22 N -0.937 5.937 23 Si 0.958 3.042 24 H -0.294 1.294 25 H -0.262 1.262 26 H -0.301 1.301 27 C 0.157 3.843 28 H 0.026 0.974 29 C -0.127 4.127 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.409 0.591 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.056 0.944 46 H -0.009 1.009 47 H 0.055 0.945 48 H 0.246 0.754 49 H 0.046 0.954 50 H 0.061 0.939 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.769 11.902 -16.589 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.079 4.079 4 C -0.149 4.149 5 C -0.143 4.143 6 C -0.152 4.152 7 C -0.139 4.139 8 C -0.075 4.075 9 C -0.143 4.143 10 C 0.303 3.697 11 O -0.458 6.458 12 N -0.351 5.351 13 C 0.039 3.961 14 H 0.093 0.907 15 C -0.153 4.153 16 C -0.163 4.163 17 C 0.054 3.946 18 N -0.319 5.319 19 C -0.376 4.376 20 H 0.099 0.901 21 C -0.245 4.245 22 N -0.583 5.583 23 Si 0.788 3.212 24 H -0.221 1.221 25 H -0.187 1.187 26 H -0.228 1.228 27 C 0.050 3.950 28 H 0.043 0.957 29 C -0.185 4.185 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.146 0.854 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.245 0.755 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.009 0.991 47 H 0.074 0.926 48 H 0.055 0.945 49 H 0.065 0.935 50 H 0.080 0.920 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.116 11.765 -16.922 20.610 hybrid contribution -0.848 -0.494 1.227 1.571 sum -0.964 11.271 -15.694 19.346 Atomic orbital electron populations 1.21738 0.93398 1.02393 1.02424 1.20535 0.97066 0.92361 1.02370 1.19899 0.98740 0.96141 0.93088 1.21247 1.00222 0.95801 0.97639 1.21418 0.99219 0.94721 0.98946 1.21366 1.00517 1.00930 0.92356 1.21235 0.98865 0.94630 0.99143 1.19293 1.00353 0.94440 0.93409 1.20766 0.96889 1.00405 0.96220 1.20837 0.89421 0.79172 0.80282 1.90663 1.32682 1.65274 1.57185 1.45982 1.17425 1.48170 1.23489 1.21161 0.89120 0.91113 0.94691 0.90734 1.21703 0.98129 0.96040 0.99428 1.21929 0.97214 0.99440 0.97682 1.20565 0.99050 0.86267 0.88706 1.44316 1.21435 1.17804 1.48352 1.19498 1.11671 0.92557 1.13892 0.90083 1.25780 1.03056 0.96554 0.99099 1.70188 1.39587 1.04876 1.43690 0.85398 0.80182 0.77302 0.78362 1.22120 1.18651 1.22801 1.20740 0.89952 0.92812 0.91468 0.95688 1.21699 1.01356 0.95119 1.00278 0.91791 0.91662 0.92485 0.90740 0.92819 0.84788 0.83986 0.84214 0.85362 0.86891 0.86334 0.75499 0.91968 0.92811 0.92197 0.92540 0.99075 0.92613 0.94523 0.93483 0.91988 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.72 71.98 0.70 -1.84 16 2 C -0.09 -1.89 5.38 29.85 0.16 -1.73 16 3 C -0.08 -1.87 5.13 -19.87 -0.10 -1.97 16 4 C -0.13 -2.76 9.68 22.27 0.22 -2.54 16 5 C -0.13 -2.40 10.05 22.27 0.22 -2.17 16 6 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 7 C -0.12 -2.74 9.68 22.27 0.22 -2.52 16 8 C -0.07 -1.83 4.37 -19.86 -0.09 -1.91 16 9 C -0.10 -2.40 5.16 29.10 0.15 -2.25 16 10 C 0.52 15.44 6.97 87.66 0.61 16.05 16 11 O -0.58 -21.29 15.70 -3.03 -0.05 -21.34 16 12 N -0.70 -21.44 3.44 -442.85 -1.52 -22.97 16 13 C 0.15 4.95 2.32 44.93 0.10 5.05 16 14 H 0.07 2.58 7.58 -2.39 -0.02 2.56 16 15 C -0.11 -3.91 5.58 30.62 0.17 -3.74 16 16 C -0.12 -4.50 5.93 30.67 0.18 -4.32 16 17 C 0.18 8.20 5.29 86.36 0.46 8.65 16 18 N -0.60 -26.78 2.65 -676.02 -1.79 -28.57 16 19 C -0.25 -11.99 8.58 84.03 0.72 -11.27 16 20 H 0.08 3.72 6.22 -2.92 -0.02 3.70 16 21 C -0.05 -2.59 4.94 84.86 0.42 -2.17 16 22 N -0.94 -53.12 11.22 21.65 0.24 -52.87 16 23 Si 0.96 42.21 29.58 68.60 2.03 44.24 16 24 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 26 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 27 C 0.16 5.98 3.18 44.83 0.14 6.12 16 28 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 29 C -0.13 -4.31 7.72 71.98 0.56 -3.75 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.06 1.01 6.79 -2.39 -0.02 1.00 16 33 H 0.07 1.52 8.05 -2.38 -0.02 1.50 16 34 H 0.05 1.39 6.40 -2.39 -0.02 1.38 16 35 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 39 H 0.11 2.37 5.63 -2.39 -0.01 2.36 16 40 H 0.12 2.25 8.05 -2.39 -0.02 2.23 16 41 H 0.41 12.61 7.74 -92.70 -0.72 11.89 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.06 2.03 7.53 -2.39 -0.02 2.01 16 46 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 47 H 0.06 2.89 6.12 -2.39 -0.01 2.87 16 48 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 49 H 0.05 1.74 7.62 -2.38 -0.02 1.73 16 50 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.06 1.96 6.37 -2.39 -0.02 1.95 16 Total: -1.00 -62.70 393.44 4.17 -58.54 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: 0.20 Total: 31.73 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 5.06 Total: -8.76 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -3.08 Total: -104.41 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -62.70 4.17 -58.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993495704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.029 kcal (2) G-P(sol) polarization free energy of solvation -62.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds