Wall clock time and date at job start Tue Mar 31 2020 16:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47304 * 2 1 4 4 C 1.38250 * 120.00510 * 265.02416 * 3 2 1 5 5 C 1.38212 * 120.00556 * 180.02562 * 4 3 2 6 6 C 1.38258 * 119.99602 * 359.95097 * 5 4 3 7 7 C 1.38217 * 120.00371 * 0.04841 * 6 5 4 8 8 C 1.38217 * 119.99920 * 84.99910 * 3 2 1 9 9 C 1.50708 * 119.99782 * 0.02562 * 8 3 2 10 10 C 1.50701 * 109.46744 * 85.02276 * 9 8 3 11 11 O 1.21283 * 120.00426 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99908 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00218 * 180.02562 * 12 10 9 14 14 H 1.08995 * 109.49603 * 34.99877 * 13 12 10 15 15 C 1.53042 * 109.49542 * 274.93234 * 13 12 10 16 16 C 1.53046 * 109.53624 * 178.68143 * 15 13 12 17 17 C 1.53188 * 109.30827 * 61.36593 * 16 15 13 18 18 N 1.46921 * 108.78002 * 305.36631 * 17 16 15 19 19 C 1.36939 * 120.62827 * 233.60943 * 18 17 16 20 20 H 1.08002 * 120.00031 * 150.88423 * 19 18 17 21 21 C 1.38813 * 120.00353 * 330.88596 * 19 18 17 22 22 N 1.31620 * 120.00086 * 160.73622 * 21 19 18 23 23 Si 1.86796 * 119.99846 * 340.74103 * 21 19 18 24 24 H 1.48501 * 109.47219 * 92.31001 * 23 21 19 25 25 H 1.48503 * 109.47088 * 212.30992 * 23 21 19 26 26 H 1.48501 * 109.46991 * 332.30977 * 23 21 19 27 27 C 1.46926 * 118.76492 * 53.58756 * 18 17 16 28 28 H 1.09002 * 109.56455 * 66.21637 * 27 18 17 29 29 C 1.53005 * 109.61680 * 186.64378 * 27 18 17 30 30 H 1.09000 * 109.47157 * 300.00125 * 1 2 3 31 31 H 1.09000 * 109.46979 * 59.99731 * 1 2 3 32 32 H 1.08999 * 109.47078 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47409 * 240.00610 * 2 1 3 34 34 H 1.09003 * 109.47679 * 120.00105 * 2 1 3 35 35 H 1.08003 * 119.99462 * 359.97438 * 4 3 2 36 36 H 1.07994 * 120.00155 * 179.97438 * 5 4 3 37 37 H 1.08001 * 119.99759 * 180.32228 * 6 5 4 38 38 H 1.07990 * 120.00237 * 179.97438 * 7 6 5 39 39 H 1.08994 * 109.46843 * 205.01947 * 9 8 3 40 40 H 1.08997 * 109.47451 * 325.02437 * 9 8 3 41 41 H 0.97005 * 119.99675 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.46318 * 298.70457 * 15 13 12 43 43 H 1.09007 * 109.45687 * 58.66745 * 15 13 12 44 44 H 1.09000 * 109.49755 * 181.31998 * 16 15 13 45 45 H 1.09005 * 109.49644 * 301.41625 * 16 15 13 46 46 H 1.09005 * 109.58650 * 65.15638 * 17 16 15 47 47 H 1.09005 * 109.58136 * 185.43343 * 17 16 15 48 48 H 0.97003 * 120.00067 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.47299 * 179.30347 * 29 27 18 50 50 H 1.09009 * 109.46889 * 299.30263 * 29 27 18 51 51 H 1.09000 * 109.46930 * 59.29731 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0380 -1.1927 5 6 2.8219 3.3409 -1.1927 6 6 2.9540 4.0274 0.0002 7 6 2.6257 3.4104 1.1926 8 6 2.1643 2.1072 1.1925 9 6 1.8064 1.4344 2.4927 10 6 2.9863 0.6382 2.9876 11 8 4.0165 0.6192 2.3479 12 7 2.8970 -0.0521 4.1418 13 6 4.0441 -0.8257 4.6233 14 1 4.9670 -0.3056 4.3671 15 6 4.0385 -2.2089 3.9684 16 6 5.2547 -3.0061 4.4456 17 6 5.1756 -3.1898 5.9644 18 7 5.0345 -1.8698 6.5938 19 6 5.8962 -1.4719 7.5810 20 1 6.1170 -0.4232 7.7146 21 6 6.4859 -2.4164 8.4099 22 7 7.5717 -2.1105 9.0880 23 14 5.7385 -4.1214 8.5629 24 1 6.3716 -5.0300 7.5735 25 1 5.9713 -4.6428 9.9337 26 1 4.2783 -4.0469 8.3030 27 6 3.9518 -0.9842 6.1442 28 1 2.9890 -1.4217 6.4082 29 6 4.0969 0.3846 6.8122 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.2575 1.5017 -2.1245 36 1 3.0788 3.8228 -2.1244 37 1 3.3095 5.0472 -0.0002 38 1 2.7293 3.9465 2.1244 39 1 1.5422 2.1903 3.2321 40 1 0.9584 0.7678 2.3355 41 1 2.0731 -0.0367 4.6536 42 1 3.1264 -2.7379 4.2447 43 1 4.0796 -2.0978 2.8848 44 1 5.2628 -3.9823 3.9609 45 1 6.1665 -2.4656 4.1915 46 1 4.3127 -3.8076 6.2133 47 1 6.0855 -3.6721 6.3219 48 1 7.9835 -2.7704 9.6676 49 1 3.2999 1.0434 6.4676 50 1 4.0310 0.2696 7.8942 51 1 5.0633 0.8158 6.5509 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993495705.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:58 Heat of formation + Delta-G solvation = -3.465722 kcal Electronic energy + Delta-G solvation = -29135.410527 eV Core-core repulsion = 25420.521565 eV Total energy + Delta-G solvation = -3714.888962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.37590 -39.21927 -37.76680 -34.49987 -34.37421 -32.88065 -32.59010 -31.69594 -30.11234 -29.61249 -27.73690 -26.24921 -24.88511 -24.03458 -22.88177 -21.96013 -20.91222 -20.74896 -20.12250 -19.47559 -17.00263 -16.67946 -16.42478 -16.21056 -15.86303 -15.30381 -14.97960 -14.64870 -14.38861 -14.07151 -13.87180 -13.65206 -13.59723 -13.53096 -13.24288 -13.16732 -13.08167 -12.43148 -12.27339 -12.10246 -11.97702 -11.91472 -11.83056 -11.46370 -11.35682 -11.28170 -10.97556 -10.89962 -10.82678 -10.68051 -10.43126 -10.34092 -9.98355 -9.79458 -9.52690 -9.44958 -8.88584 -8.77988 -8.68007 -8.58533 -6.97993 -5.94929 -3.33851 1.23939 1.31807 2.79674 3.29429 3.32012 3.47261 3.49804 3.75343 4.48345 4.52315 4.59669 4.75842 4.81503 4.86355 4.98729 5.00029 5.07650 5.16344 5.24086 5.24834 5.34784 5.38138 5.41565 5.45287 5.49776 5.56053 5.70342 5.71993 5.73631 5.87250 5.89097 5.98202 6.01138 6.06486 6.19251 6.22567 6.28523 6.37690 6.41173 6.41769 6.46707 6.51125 6.55353 6.63886 6.71029 6.80576 6.91754 6.94878 7.04468 7.70317 7.95445 8.33680 8.42685 8.92144 9.71129 10.07231 11.20503 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022324 B = 0.002814 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.946621 B = 9948.409621 C =10459.992659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.059 4.059 9 C -0.108 4.108 10 C 0.512 3.488 11 O -0.530 6.530 12 N -0.722 5.722 13 C 0.131 3.869 14 H 0.089 0.911 15 C -0.117 4.117 16 C -0.132 4.132 17 C 0.123 3.877 18 N -0.597 5.597 19 C -0.261 4.261 20 H 0.092 0.908 21 C 0.026 3.974 22 N -0.908 5.908 23 Si 0.883 3.117 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.271 1.271 27 C 0.171 3.829 28 H 0.032 0.968 29 C -0.136 4.136 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.396 0.604 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.025 0.975 47 H 0.074 0.926 48 H 0.263 0.737 49 H 0.040 0.960 50 H 0.066 0.934 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.421 7.510 -17.747 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.064 4.064 4 C -0.138 4.138 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.122 4.122 8 C -0.060 4.060 9 C -0.148 4.148 10 C 0.298 3.702 11 O -0.406 6.406 12 N -0.373 5.373 13 C 0.025 3.975 14 H 0.107 0.893 15 C -0.156 4.156 16 C -0.172 4.172 17 C -0.002 4.002 18 N -0.322 5.322 19 C -0.389 4.389 20 H 0.109 0.891 21 C -0.173 4.173 22 N -0.551 5.551 23 Si 0.714 3.286 24 H -0.216 1.216 25 H -0.233 1.233 26 H -0.196 1.196 27 C 0.064 3.936 28 H 0.049 0.951 29 C -0.194 4.194 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.229 0.771 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.043 0.957 47 H 0.092 0.908 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.085 0.915 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.526 7.455 -18.049 24.948 hybrid contribution -0.609 -1.046 0.402 1.275 sum -16.135 6.409 -17.647 24.755 Atomic orbital electron populations 1.21770 0.94749 1.01783 1.02093 1.20565 0.95871 0.92931 1.03228 1.19656 0.98431 0.95654 0.92639 1.20960 1.00281 0.95208 0.97304 1.21085 0.99861 0.94852 0.97989 1.21060 1.00729 0.99957 0.92564 1.20984 0.98537 0.94521 0.98194 1.19117 0.99816 0.93948 0.93113 1.20777 0.97883 1.00188 0.95979 1.20397 0.89297 0.79543 0.80999 1.90736 1.30889 1.62869 1.56101 1.46118 1.17202 1.50155 1.23800 1.21715 0.88963 0.91024 0.95798 0.89265 1.21766 0.98567 0.95745 0.99538 1.21998 0.98152 0.98981 0.98078 1.21398 0.99702 0.88027 0.91048 1.44339 1.32373 1.14020 1.41436 1.18913 1.17996 0.95095 1.06889 0.89077 1.25291 0.97162 0.97848 0.97025 1.69821 1.18649 1.35279 1.31359 0.86951 0.80407 0.85560 0.75722 1.21604 1.23254 1.19606 1.20573 0.91461 0.91942 0.89619 0.95064 1.21822 1.00813 0.95169 1.01576 0.92512 0.92534 0.92302 0.91050 0.90906 0.86327 0.86330 0.86231 0.86201 0.88167 0.87996 0.77081 0.92690 0.92628 0.92568 0.91516 0.95698 0.90803 0.92754 0.94087 0.91512 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.72 37.15 0.36 -0.74 16 2 C -0.09 -0.86 5.38 -27.89 -0.15 -1.01 16 3 C -0.06 -0.71 5.13 -104.62 -0.54 -1.25 16 4 C -0.12 -1.25 9.68 -39.59 -0.38 -1.63 16 5 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 6 C -0.13 -1.29 10.05 -39.58 -0.40 -1.68 16 7 C -0.10 -1.16 9.68 -39.58 -0.38 -1.54 16 8 C -0.06 -0.68 4.37 -104.62 -0.46 -1.14 16 9 C -0.11 -1.07 5.16 -29.03 -0.15 -1.22 16 10 C 0.51 7.02 7.00 -10.98 -0.08 6.94 16 11 O -0.53 -9.65 15.70 5.55 0.09 -9.56 16 12 N -0.72 -9.42 4.57 -53.69 -0.25 -9.66 16 13 C 0.13 2.20 1.99 -67.81 -0.14 2.07 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 15 C -0.12 -1.93 5.46 -26.69 -0.15 -2.08 16 16 C -0.13 -2.42 6.08 -26.61 -0.16 -2.58 16 17 C 0.12 2.67 4.19 -3.72 -0.02 2.65 16 18 N -0.60 -13.77 2.75 -164.77 -0.45 -14.22 16 19 C -0.26 -7.06 9.05 -15.06 -0.14 -7.19 16 20 H 0.09 2.61 6.38 -52.49 -0.34 2.28 16 21 C 0.03 0.73 5.24 -17.43 -0.09 0.64 16 22 N -0.91 -27.58 13.97 55.49 0.78 -26.81 16 23 Si 0.88 22.12 24.34 -169.99 -4.14 17.98 16 24 H -0.29 -7.02 6.62 56.52 0.37 -6.65 16 25 H -0.30 -7.80 7.11 56.52 0.40 -7.39 16 26 H -0.27 -6.62 6.63 56.52 0.37 -6.25 16 27 C 0.17 3.20 3.03 -67.60 -0.21 2.99 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 C -0.14 -2.43 7.84 37.16 0.29 -2.14 16 30 H 0.06 0.40 6.80 -51.93 -0.35 0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 34 H 0.07 0.80 6.42 -51.93 -0.33 0.47 16 35 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 40 H 0.10 0.81 5.62 -51.93 -0.29 0.51 16 41 H 0.40 3.99 8.60 -40.82 -0.35 3.64 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.03 0.53 7.03 -51.93 -0.37 0.16 16 47 H 0.07 1.75 4.62 -51.93 -0.24 1.51 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.04 0.58 7.78 -51.93 -0.40 0.18 16 50 H 0.07 1.28 7.66 -51.92 -0.40 0.88 16 51 H 0.06 1.17 7.40 -51.93 -0.38 0.78 16 LS Contribution 390.36 15.07 5.88 5.88 Total: -1.00 -32.94 390.36 -9.79 -42.73 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -8.53 Total: 4.16 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -3.17 Total: -10.50 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.08 Total: -50.69 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.94 -9.79 -42.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993495705.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.268 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds