Wall clock time and date at job start Tue Mar 31 2020 16:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47304 * 2 1 4 4 C 1.38250 * 120.00510 * 265.02416 * 3 2 1 5 5 C 1.38212 * 120.00556 * 180.02562 * 4 3 2 6 6 C 1.38258 * 119.99602 * 359.95097 * 5 4 3 7 7 C 1.38217 * 120.00371 * 0.04841 * 6 5 4 8 8 C 1.38217 * 119.99920 * 84.99910 * 3 2 1 9 9 C 1.50708 * 119.99782 * 0.02562 * 8 3 2 10 10 C 1.50701 * 109.46744 * 85.02276 * 9 8 3 11 11 O 1.21283 * 120.00426 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99908 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00218 * 180.02562 * 12 10 9 14 14 H 1.08995 * 109.49603 * 34.99877 * 13 12 10 15 15 C 1.53042 * 109.49542 * 274.93234 * 13 12 10 16 16 C 1.53046 * 109.53624 * 178.68143 * 15 13 12 17 17 C 1.53188 * 109.30827 * 61.36593 * 16 15 13 18 18 N 1.46921 * 108.78002 * 305.36631 * 17 16 15 19 19 C 1.36939 * 120.62827 * 233.60943 * 18 17 16 20 20 H 1.08002 * 120.00031 * 150.88423 * 19 18 17 21 21 C 1.38813 * 120.00353 * 330.88596 * 19 18 17 22 22 N 1.31620 * 120.00086 * 160.73622 * 21 19 18 23 23 Si 1.86796 * 119.99846 * 340.74103 * 21 19 18 24 24 H 1.48501 * 109.47219 * 92.31001 * 23 21 19 25 25 H 1.48503 * 109.47088 * 212.30992 * 23 21 19 26 26 H 1.48501 * 109.46991 * 332.30977 * 23 21 19 27 27 C 1.46926 * 118.76492 * 53.58756 * 18 17 16 28 28 H 1.09002 * 109.56455 * 66.21637 * 27 18 17 29 29 C 1.53005 * 109.61680 * 186.64378 * 27 18 17 30 30 H 1.09000 * 109.47157 * 300.00125 * 1 2 3 31 31 H 1.09000 * 109.46979 * 59.99731 * 1 2 3 32 32 H 1.08999 * 109.47078 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47409 * 240.00610 * 2 1 3 34 34 H 1.09003 * 109.47679 * 120.00105 * 2 1 3 35 35 H 1.08003 * 119.99462 * 359.97438 * 4 3 2 36 36 H 1.07994 * 120.00155 * 179.97438 * 5 4 3 37 37 H 1.08001 * 119.99759 * 180.32228 * 6 5 4 38 38 H 1.07990 * 120.00237 * 179.97438 * 7 6 5 39 39 H 1.08994 * 109.46843 * 205.01947 * 9 8 3 40 40 H 1.08997 * 109.47451 * 325.02437 * 9 8 3 41 41 H 0.97005 * 119.99675 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.46318 * 298.70457 * 15 13 12 43 43 H 1.09007 * 109.45687 * 58.66745 * 15 13 12 44 44 H 1.09000 * 109.49755 * 181.31998 * 16 15 13 45 45 H 1.09005 * 109.49644 * 301.41625 * 16 15 13 46 46 H 1.09005 * 109.58650 * 65.15638 * 17 16 15 47 47 H 1.09005 * 109.58136 * 185.43343 * 17 16 15 48 48 H 0.97003 * 120.00067 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.47299 * 179.30347 * 29 27 18 50 50 H 1.09009 * 109.46889 * 299.30263 * 29 27 18 51 51 H 1.09000 * 109.46930 * 59.29731 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3607 2.0380 -1.1927 5 6 2.8219 3.3409 -1.1927 6 6 2.9540 4.0274 0.0002 7 6 2.6257 3.4104 1.1926 8 6 2.1643 2.1072 1.1925 9 6 1.8064 1.4344 2.4927 10 6 2.9863 0.6382 2.9876 11 8 4.0165 0.6192 2.3479 12 7 2.8970 -0.0521 4.1418 13 6 4.0441 -0.8257 4.6233 14 1 4.9670 -0.3056 4.3671 15 6 4.0385 -2.2089 3.9684 16 6 5.2547 -3.0061 4.4456 17 6 5.1756 -3.1898 5.9644 18 7 5.0345 -1.8698 6.5938 19 6 5.8962 -1.4719 7.5810 20 1 6.1170 -0.4232 7.7146 21 6 6.4859 -2.4164 8.4099 22 7 7.5717 -2.1105 9.0880 23 14 5.7385 -4.1214 8.5629 24 1 6.3716 -5.0300 7.5735 25 1 5.9713 -4.6428 9.9337 26 1 4.2783 -4.0469 8.3030 27 6 3.9518 -0.9842 6.1442 28 1 2.9890 -1.4217 6.4082 29 6 4.0969 0.3846 6.8122 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.2575 1.5017 -2.1245 36 1 3.0788 3.8228 -2.1244 37 1 3.3095 5.0472 -0.0002 38 1 2.7293 3.9465 2.1244 39 1 1.5422 2.1903 3.2321 40 1 0.9584 0.7678 2.3355 41 1 2.0731 -0.0367 4.6536 42 1 3.1264 -2.7379 4.2447 43 1 4.0796 -2.0978 2.8848 44 1 5.2628 -3.9823 3.9609 45 1 6.1665 -2.4656 4.1915 46 1 4.3127 -3.8076 6.2133 47 1 6.0855 -3.6721 6.3219 48 1 7.9835 -2.7704 9.6676 49 1 3.2999 1.0434 6.4676 50 1 4.0310 0.2696 7.8942 51 1 5.0633 0.8158 6.5509 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993495705.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:57 Heat of formation + Delta-G solvation = -23.315860 kcal Electronic energy + Delta-G solvation = -29136.271293 eV Core-core repulsion = 25420.521565 eV Total energy + Delta-G solvation = -3715.749729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.38918 -40.30506 -39.14676 -35.90631 -35.18130 -34.42966 -33.59543 -33.40339 -31.63013 -30.34623 -28.74424 -27.68707 -26.69161 -24.77689 -24.27808 -22.91192 -22.40428 -21.70345 -21.35670 -20.83330 -18.45616 -18.03900 -17.59265 -17.24928 -17.04203 -16.69718 -16.18506 -15.84420 -15.75734 -15.31300 -15.16064 -14.98327 -14.75424 -14.61119 -14.33353 -14.26765 -13.96450 -13.84645 -13.65115 -13.48568 -13.05645 -12.93066 -12.89236 -12.76786 -12.63395 -12.55251 -12.46316 -12.13361 -12.03287 -11.88957 -11.67117 -11.65428 -11.53084 -11.45105 -11.29931 -10.91929 -10.65318 -9.98093 -9.66488 -9.44887 -8.89747 -8.12584 -5.47397 0.45530 0.54114 1.32814 1.42697 1.52111 1.73868 2.21999 2.45075 2.91901 3.09214 3.33975 3.69918 3.84673 3.88174 3.93108 4.02970 4.06017 4.13190 4.16144 4.22739 4.32085 4.37748 4.40153 4.51110 4.52738 4.57265 4.65040 4.66901 4.72281 4.75439 4.78265 4.87786 4.90825 5.01658 5.02482 5.05545 5.10663 5.15766 5.20290 5.24392 5.25978 5.37574 5.42670 5.46046 5.61405 5.63164 5.65328 5.77834 5.91165 6.17544 6.19816 6.68003 6.92959 7.38664 7.64873 8.03611 9.06844 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.022324 B = 0.002814 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.946621 B = 9948.409621 C =10459.992659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.078 4.078 4 C -0.133 4.133 5 C -0.127 4.127 6 C -0.138 4.138 7 C -0.122 4.122 8 C -0.079 4.079 9 C -0.098 4.098 10 C 0.514 3.486 11 O -0.579 6.579 12 N -0.709 5.709 13 C 0.145 3.855 14 H 0.048 0.952 15 C -0.109 4.109 16 C -0.126 4.126 17 C 0.118 3.882 18 N -0.613 5.613 19 C -0.241 4.241 20 H 0.060 0.940 21 C -0.037 4.037 22 N -0.961 5.961 23 Si 0.946 3.054 24 H -0.279 1.279 25 H -0.315 1.315 26 H -0.254 1.254 27 C 0.168 3.832 28 H 0.059 0.941 29 C -0.129 4.129 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.415 0.585 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.043 0.957 47 H 0.048 0.952 48 H 0.260 0.740 49 H 0.082 0.918 50 H 0.048 0.952 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.938 6.935 -19.369 28.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.078 4.078 4 C -0.151 4.151 5 C -0.145 4.145 6 C -0.156 4.156 7 C -0.140 4.140 8 C -0.079 4.079 9 C -0.137 4.137 10 C 0.302 3.698 11 O -0.458 6.458 12 N -0.361 5.361 13 C 0.038 3.962 14 H 0.067 0.933 15 C -0.148 4.148 16 C -0.166 4.166 17 C -0.007 4.007 18 N -0.338 5.338 19 C -0.371 4.371 20 H 0.078 0.922 21 C -0.231 4.231 22 N -0.607 5.607 23 Si 0.775 3.225 24 H -0.205 1.205 25 H -0.244 1.244 26 H -0.178 1.178 27 C 0.062 3.938 28 H 0.077 0.923 29 C -0.186 4.186 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.252 0.748 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.101 0.899 50 H 0.067 0.933 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -19.122 6.886 -19.698 28.304 hybrid contribution 0.512 -0.730 0.800 1.198 sum -18.610 6.157 -18.899 27.228 Atomic orbital electron populations 1.21740 0.92943 1.02587 1.02588 1.20561 0.97384 0.91942 1.02515 1.19946 0.98556 0.96378 0.92943 1.21260 1.00287 0.95686 0.97904 1.21411 0.99295 0.94892 0.98863 1.21370 1.00659 1.00934 0.92588 1.21263 0.98791 0.94921 0.98982 1.19356 1.00430 0.94293 0.93850 1.20792 0.96489 1.00591 0.95876 1.21051 0.89641 0.78900 0.80255 1.90726 1.33126 1.64447 1.57501 1.45886 1.16781 1.49488 1.23936 1.21221 0.88892 0.91554 0.94501 0.93319 1.21698 0.98579 0.95090 0.99427 1.21911 0.98140 1.00597 0.95965 1.21468 0.99092 0.87230 0.92901 1.44488 1.33207 1.15267 1.40872 1.18838 1.17497 0.93778 1.06990 0.92210 1.25928 0.97652 1.01949 0.97550 1.69965 1.20605 1.36779 1.33389 0.85916 0.80354 0.81148 0.75053 1.20550 1.24433 1.17759 1.20803 0.91004 0.91387 0.90634 0.92346 1.21743 1.00725 0.95706 1.00455 0.91825 0.92252 0.91303 0.91099 0.92256 0.84888 0.84298 0.84565 0.85340 0.85540 0.85521 0.74757 0.90197 0.92450 0.89737 0.93895 0.93938 0.93366 0.93125 0.89934 0.93284 0.95258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.72 71.98 0.70 -1.03 16 2 C -0.09 -1.52 5.38 29.85 0.16 -1.36 16 3 C -0.08 -1.63 5.13 -19.87 -0.10 -1.73 16 4 C -0.13 -2.61 9.68 22.27 0.22 -2.39 16 5 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 6 C -0.14 -2.67 10.05 22.27 0.22 -2.44 16 7 C -0.12 -2.55 9.68 22.27 0.22 -2.34 16 8 C -0.08 -1.67 4.37 -19.86 -0.09 -1.76 16 9 C -0.10 -1.66 5.16 29.10 0.15 -1.51 16 10 C 0.51 13.05 7.00 87.66 0.61 13.66 16 11 O -0.58 -20.82 15.70 -3.04 -0.05 -20.86 16 12 N -0.71 -16.46 4.57 -442.16 -2.02 -18.49 16 13 C 0.15 4.66 1.99 45.07 0.09 4.75 16 14 H 0.05 1.99 7.58 -2.39 -0.02 1.97 16 15 C -0.11 -3.31 5.46 30.62 0.17 -3.14 16 16 C -0.13 -4.40 6.08 30.67 0.19 -4.22 16 17 C 0.12 4.88 4.19 86.36 0.36 5.24 16 18 N -0.61 -27.91 2.75 -675.22 -1.86 -29.77 16 19 C -0.24 -13.40 9.05 84.03 0.76 -12.64 16 20 H 0.06 3.62 6.38 -2.91 -0.02 3.60 16 21 C -0.04 -2.12 5.24 84.86 0.44 -1.68 16 22 N -0.96 -60.69 13.97 21.65 0.30 -60.39 16 23 Si 0.95 46.01 24.34 68.60 1.67 47.68 16 24 H -0.28 -12.96 6.62 99.48 0.66 -12.30 16 25 H -0.32 -15.75 7.11 99.48 0.71 -15.04 16 26 H -0.25 -11.46 6.63 99.48 0.66 -10.80 16 27 C 0.17 5.96 3.03 44.98 0.14 6.09 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 C -0.13 -4.51 7.84 71.98 0.56 -3.95 16 30 H 0.06 0.68 6.80 -2.39 -0.02 0.67 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 33 H 0.07 1.21 8.05 -2.39 -0.02 1.19 16 34 H 0.06 1.19 6.42 -2.39 -0.02 1.18 16 35 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.13 2.32 8.06 -2.92 -0.02 2.29 16 39 H 0.13 1.48 8.05 -2.39 -0.02 1.46 16 40 H 0.13 1.51 5.62 -2.39 -0.01 1.50 16 41 H 0.42 6.54 8.60 -92.70 -0.80 5.74 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.06 1.75 8.14 -2.38 -0.02 1.74 16 44 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 46 H 0.04 1.64 7.03 -2.38 -0.02 1.62 16 47 H 0.05 2.25 4.62 -2.38 -0.01 2.23 16 48 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 49 H 0.08 2.15 7.78 -2.39 -0.02 2.13 16 50 H 0.05 1.87 7.66 -2.38 -0.02 1.85 16 51 H 0.03 1.17 7.40 -2.39 -0.02 1.15 16 Total: -1.00 -75.16 390.36 3.10 -72.06 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.02 Total: 22.33 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 5.03 Total: -12.56 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -3.58 Total: -108.65 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.05 Total: -20.86 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.67 Total: 47.68 kcal Total: -75.16 3.10 -72.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993495705.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.749 kcal (2) G-P(sol) polarization free energy of solvation -75.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds