Wall clock time and date at job start Tue Mar 31 2020 16:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47321 * 2 1 4 4 C 1.38258 * 120.00226 * 265.21560 * 3 2 1 5 5 C 1.38215 * 119.99665 * 180.25461 * 4 3 2 6 6 C 1.38249 * 120.00538 * 359.75956 * 5 4 3 7 7 C 1.38221 * 119.99676 * 0.02863 * 6 5 4 8 8 C 1.38213 * 119.99982 * 84.99846 * 3 2 1 9 9 C 1.50705 * 119.99864 * 0.02562 * 8 3 2 10 10 C 1.50703 * 109.47133 * 84.72595 * 9 8 3 11 11 O 1.21278 * 119.99714 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99926 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00089 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.49771 * 325.00125 * 13 12 10 15 15 C 1.53040 * 109.49811 * 85.05944 * 13 12 10 16 16 C 1.53047 * 109.53577 * 58.58968 * 15 13 12 17 17 C 1.53191 * 109.31319 * 61.36425 * 16 15 13 18 18 N 1.46930 * 108.77408 * 305.36682 * 17 16 15 19 19 C 1.36939 * 120.62914 * 233.62791 * 18 17 16 20 20 H 1.07996 * 119.99713 * 151.58984 * 19 18 17 21 21 C 1.38812 * 119.99999 * 331.59323 * 19 18 17 22 22 N 1.31622 * 120.00090 * 160.49718 * 21 19 18 23 23 Si 1.86803 * 120.00047 * 340.49742 * 21 19 18 24 24 H 1.48499 * 109.47011 * 94.88874 * 23 21 19 25 25 H 1.48496 * 109.47025 * 214.88602 * 23 21 19 26 26 H 1.48503 * 109.47044 * 334.88484 * 23 21 19 27 27 C 1.46996 * 118.75705 * 53.60796 * 18 17 16 28 28 H 1.08994 * 109.57909 * 66.17125 * 27 18 17 29 29 C 1.52992 * 109.62839 * 186.62009 * 27 18 17 30 30 H 1.09006 * 109.47348 * 60.00055 * 1 2 3 31 31 H 1.09003 * 109.47110 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47174 * 299.99834 * 1 2 3 33 33 H 1.09006 * 109.47350 * 240.00071 * 2 1 3 34 34 H 1.08996 * 109.47329 * 119.99953 * 2 1 3 35 35 H 1.08001 * 120.00041 * 0.02970 * 4 3 2 36 36 H 1.08006 * 119.99330 * 179.79020 * 5 4 3 37 37 H 1.08000 * 120.00674 * 180.02562 * 6 5 4 38 38 H 1.08001 * 119.99959 * 179.97438 * 7 6 5 39 39 H 1.09006 * 109.46843 * 324.72372 * 9 8 3 40 40 H 1.08997 * 109.47129 * 204.72886 * 9 8 3 41 41 H 0.97002 * 120.00092 * 359.97438 * 12 10 9 42 42 H 1.08995 * 109.46084 * 178.60535 * 15 13 12 43 43 H 1.08998 * 109.46135 * 298.58381 * 15 13 12 44 44 H 1.09001 * 109.49545 * 181.31604 * 16 15 13 45 45 H 1.08996 * 109.49774 * 301.41210 * 16 15 13 46 46 H 1.09005 * 109.58816 * 65.14853 * 17 16 15 47 47 H 1.08993 * 109.58854 * 185.57920 * 17 16 15 48 48 H 0.97002 * 119.99895 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.47066 * 179.27110 * 29 27 18 50 50 H 1.09003 * 109.47445 * 299.26878 * 29 27 18 51 51 H 1.09004 * 109.47522 * 59.26755 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3569 2.0393 -1.1932 5 6 2.8227 3.3406 -1.1926 6 6 2.9592 4.0255 0.0005 7 6 2.6306 3.4087 1.1930 8 6 2.1643 2.1071 1.1924 9 6 1.8064 1.4344 2.4926 10 6 2.9838 0.6323 2.9840 11 8 4.0124 0.6096 2.3419 12 7 2.8936 -0.0598 4.1370 13 6 4.0383 -0.8391 4.6149 14 1 4.5716 -1.2618 3.7635 15 6 4.9803 0.0704 5.4072 16 6 4.2232 0.6908 6.5837 17 6 3.7309 -0.4228 7.5134 18 7 2.9428 -1.3815 6.7268 19 6 1.6721 -1.7197 7.1089 20 1 0.9477 -2.0222 6.3672 21 6 1.3150 -1.6736 8.4496 22 7 0.0451 -1.6165 8.7908 23 14 2.6369 -1.6926 9.7694 24 1 2.9566 -0.2988 10.1698 25 1 2.1461 -2.4468 10.9506 26 1 3.8588 -2.3474 9.2368 27 6 3.5439 -1.9706 5.5215 28 1 4.3835 -2.6051 5.8049 29 6 2.4963 -2.8023 4.7789 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.2500 1.5044 -2.1253 36 1 3.0795 3.8226 -2.1244 37 1 3.3228 5.0425 0.0010 38 1 2.7376 3.9435 2.1251 39 1 0.9550 0.7719 2.3365 40 1 1.5472 2.1906 3.2336 41 1 2.0710 -0.0413 4.6507 42 1 5.8191 -0.5152 5.7835 43 1 5.3527 0.8621 4.7572 44 1 4.8883 1.3565 7.1339 45 1 3.3698 1.2562 6.2096 46 1 4.5858 -0.9314 7.9591 47 1 3.1078 0.0053 8.2984 48 1 -0.2043 -1.5839 9.7276 49 1 2.9411 -3.2272 3.8790 50 1 2.1458 -3.6067 5.4255 51 1 1.6557 -2.1656 4.5029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993495706.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:00 Heat of formation + Delta-G solvation = -2.703149 kcal Electronic energy + Delta-G solvation = -29696.083752 eV Core-core repulsion = 25981.227858 eV Total energy + Delta-G solvation = -3714.855894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.27960 -39.23489 -37.66215 -34.34738 -34.00315 -32.75390 -32.48763 -31.71631 -30.19767 -29.50725 -27.59951 -26.32151 -24.91337 -23.89767 -22.78434 -22.05225 -21.12561 -20.66664 -19.92417 -18.89000 -16.96607 -16.60797 -16.36731 -16.08635 -15.52148 -15.41882 -15.00052 -14.67301 -14.15148 -13.95495 -13.77106 -13.59426 -13.53255 -13.48466 -13.17363 -13.03672 -12.87573 -12.56325 -12.15702 -12.12065 -11.90401 -11.82289 -11.68753 -11.58103 -11.31592 -11.27555 -10.85348 -10.82179 -10.71906 -10.65756 -10.53982 -10.29807 -9.95816 -9.58274 -9.55205 -9.47863 -8.78239 -8.69576 -8.56312 -8.53089 -7.01674 -6.00823 -3.38896 1.34771 1.41254 2.97287 3.28789 3.45705 3.47710 3.51699 3.91083 4.48134 4.64161 4.72125 4.81955 4.89097 4.94891 5.09909 5.14931 5.21700 5.25057 5.33481 5.39701 5.42667 5.46189 5.49249 5.52663 5.57909 5.62346 5.70559 5.83930 5.89249 5.94496 6.00100 6.05221 6.07681 6.11762 6.20745 6.25784 6.28510 6.34992 6.43283 6.47748 6.49627 6.50238 6.66874 6.67761 6.72435 6.84096 6.91490 7.01619 7.05380 7.89543 7.99781 8.27054 8.62397 8.86840 9.66340 10.03433 11.14264 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.003301 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.176445 B = 8479.271159 C = 8929.406997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.063 4.063 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.054 4.054 9 C -0.111 4.111 10 C 0.513 3.487 11 O -0.546 6.546 12 N -0.704 5.704 13 C 0.135 3.865 14 H 0.079 0.921 15 C -0.122 4.122 16 C -0.132 4.132 17 C 0.126 3.874 18 N -0.602 5.602 19 C -0.263 4.263 20 H 0.093 0.907 21 C 0.027 3.973 22 N -0.908 5.908 23 Si 0.882 3.118 24 H -0.290 1.290 25 H -0.305 1.305 26 H -0.270 1.270 27 C 0.163 3.837 28 H 0.043 0.957 29 C -0.135 4.135 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.411 0.589 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.025 0.975 47 H 0.071 0.929 48 H 0.262 0.738 49 H 0.041 0.959 50 H 0.065 0.935 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.577 6.984 -16.223 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.063 4.063 4 C -0.138 4.138 5 C -0.140 4.140 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.055 4.055 9 C -0.150 4.150 10 C 0.298 3.702 11 O -0.424 6.424 12 N -0.356 5.356 13 C 0.028 3.972 14 H 0.097 0.903 15 C -0.161 4.161 16 C -0.171 4.171 17 C 0.001 3.999 18 N -0.327 5.327 19 C -0.391 4.391 20 H 0.110 0.890 21 C -0.172 4.172 22 N -0.550 5.550 23 Si 0.712 3.288 24 H -0.218 1.218 25 H -0.234 1.234 26 H -0.195 1.195 27 C 0.056 3.944 28 H 0.061 0.939 29 C -0.193 4.193 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.247 0.753 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.043 0.957 47 H 0.089 0.911 48 H 0.072 0.928 49 H 0.060 0.940 50 H 0.084 0.916 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.164 6.921 -16.530 18.398 hybrid contribution 0.417 0.138 1.293 1.365 sum 4.581 7.059 -15.237 17.406 Atomic orbital electron populations 1.21776 0.94655 1.01933 1.02125 1.20563 0.95986 0.92831 1.03150 1.19679 0.98290 0.95739 0.92586 1.20952 1.00389 0.95201 0.97269 1.21058 1.00162 0.94903 0.97887 1.21033 1.00972 0.99846 0.92589 1.20984 0.98639 0.94588 0.98120 1.19151 0.99252 0.93863 0.93229 1.20775 0.98165 1.00309 0.95786 1.20365 0.89058 0.79777 0.80960 1.90678 1.31216 1.63527 1.56968 1.46029 1.17759 1.48701 1.23112 1.21457 0.86805 0.92459 0.96455 0.90326 1.21780 0.97806 0.99240 0.97242 1.21955 0.99537 0.98611 0.97018 1.21348 0.94726 0.89959 0.93917 1.44499 1.14634 1.46665 1.26925 1.18907 0.85519 1.42503 0.92206 0.88971 1.25293 0.95528 0.99299 0.97102 1.69809 1.15347 1.52677 1.17198 0.86970 0.82922 0.77007 0.81855 1.21819 1.23370 1.19485 1.20751 0.95286 0.91254 0.87059 0.93927 1.21785 0.98882 1.00168 0.98462 0.92649 0.92196 0.92336 0.91181 0.90791 0.86387 0.86450 0.86374 0.86299 0.87834 0.88181 0.75278 0.91901 0.92538 0.93024 0.91877 0.95696 0.91070 0.92779 0.94001 0.91551 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.72 37.15 0.36 -1.04 16 2 C -0.09 -0.98 5.38 -27.89 -0.15 -1.13 16 3 C -0.06 -0.78 5.13 -104.62 -0.54 -1.32 16 4 C -0.12 -1.36 9.68 -39.58 -0.38 -1.74 16 5 C -0.12 -1.31 10.05 -39.59 -0.40 -1.70 16 6 C -0.13 -1.41 10.05 -39.58 -0.40 -1.80 16 7 C -0.11 -1.30 9.68 -39.58 -0.38 -1.68 16 8 C -0.05 -0.71 4.37 -104.62 -0.46 -1.16 16 9 C -0.11 -1.38 5.16 -29.03 -0.15 -1.53 16 10 C 0.51 7.86 6.97 -10.98 -0.08 7.78 16 11 O -0.55 -10.05 15.70 5.56 0.09 -9.96 16 12 N -0.70 -10.98 3.47 -53.69 -0.19 -11.17 16 13 C 0.13 2.22 2.32 -67.81 -0.16 2.06 16 14 H 0.08 1.32 7.58 -51.93 -0.39 0.92 16 15 C -0.12 -1.98 5.58 -26.69 -0.15 -2.13 16 16 C -0.13 -2.27 5.93 -26.61 -0.16 -2.43 16 17 C 0.13 2.58 4.19 -3.71 -0.02 2.57 16 18 N -0.60 -12.85 2.42 -164.73 -0.40 -13.25 16 19 C -0.26 -6.59 9.07 -15.06 -0.14 -6.72 16 20 H 0.09 2.41 6.36 -52.49 -0.33 2.08 16 21 C 0.03 0.73 5.24 -17.43 -0.09 0.64 16 22 N -0.91 -26.31 13.97 55.49 0.78 -25.53 16 23 Si 0.88 21.54 24.35 -169.99 -4.14 17.40 16 24 H -0.29 -6.94 6.72 56.52 0.38 -6.56 16 25 H -0.31 -7.72 7.11 56.52 0.40 -7.32 16 26 H -0.27 -6.50 6.44 56.52 0.36 -6.13 16 27 C 0.16 2.96 3.20 -67.57 -0.22 2.74 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 C -0.14 -2.31 7.72 37.15 0.29 -2.02 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.56 6.80 -51.93 -0.35 0.21 16 33 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 34 H 0.07 0.93 6.40 -51.93 -0.33 0.60 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.10 1.16 5.64 -51.93 -0.29 0.87 16 40 H 0.10 1.11 8.05 -51.93 -0.42 0.69 16 41 H 0.41 6.66 7.77 -40.82 -0.32 6.35 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.11 7.53 -51.93 -0.39 0.72 16 46 H 0.03 0.52 6.95 -51.93 -0.36 0.16 16 47 H 0.07 1.61 4.60 -51.93 -0.24 1.37 16 48 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.07 1.23 7.66 -51.93 -0.40 0.84 16 51 H 0.06 1.02 6.38 -51.93 -0.33 0.68 16 LS Contribution 386.94 15.07 5.83 5.83 Total: -1.00 -30.00 386.94 -9.66 -39.66 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.42 Total: 7.64 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -3.21 Total: -10.62 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.19 Total: -49.95 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.40 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.00 -9.66 -39.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993495706.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.962 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds