Wall clock time and date at job start Tue Mar 31 2020 16:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47429 * 2 1 4 4 C 1.38253 * 120.00000 * 270.18812 * 3 2 1 5 5 C 1.38207 * 120.00083 * 180.22868 * 4 3 2 6 6 C 1.38265 * 120.00105 * 359.81210 * 5 4 3 7 7 C 1.38215 * 119.99618 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99981 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46924 * 269.97974 * 8 7 6 10 10 O 1.21284 * 120.00509 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00126 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00279 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.49792 * 325.00008 * 12 11 9 14 14 C 1.53048 * 109.49844 * 85.06190 * 12 11 9 15 15 C 1.53034 * 109.53792 * 181.31735 * 14 12 11 16 16 C 1.53191 * 109.31341 * 298.63603 * 15 14 12 17 17 N 1.46929 * 108.77716 * 54.64016 * 16 15 14 18 18 C 1.36935 * 120.63505 * 126.39115 * 17 16 15 19 19 H 1.07998 * 119.99497 * 209.01577 * 18 17 16 20 20 C 1.38806 * 120.00029 * 29.01297 * 18 17 16 21 21 N 1.31621 * 119.99960 * 15.02638 * 20 18 17 22 22 Si 1.86805 * 120.00219 * 195.02260 * 20 18 17 23 23 H 1.48504 * 109.46597 * 60.00339 * 22 20 18 24 24 H 1.48501 * 109.47036 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46915 * 300.00443 * 22 20 18 26 26 C 1.46942 * 118.76069 * 306.40910 * 17 16 15 27 27 H 1.09002 * 109.56208 * 293.78918 * 26 17 16 28 28 C 1.52990 * 109.61402 * 173.35771 * 26 17 16 29 29 C 1.38217 * 119.99759 * 89.99386 * 3 2 1 30 30 H 1.08998 * 109.47314 * 300.00160 * 1 2 3 31 31 H 1.09004 * 109.46931 * 60.00581 * 1 2 3 32 32 H 1.09001 * 109.47180 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47788 * 239.99233 * 2 1 3 34 34 H 1.09004 * 109.46931 * 119.99419 * 2 1 3 35 35 H 1.08001 * 119.99702 * 0.02562 * 4 3 2 36 36 H 1.08002 * 120.00409 * 179.78815 * 5 4 3 37 37 H 1.07994 * 119.99907 * 179.97438 * 6 5 4 38 38 H 1.09006 * 109.47189 * 29.97426 * 8 7 6 39 39 H 1.08997 * 109.47818 * 149.97582 * 8 7 6 40 40 H 0.97004 * 119.99994 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.45715 * 301.34020 * 14 12 11 42 42 H 1.09005 * 109.45711 * 61.29744 * 14 12 11 43 43 H 1.09002 * 109.50006 * 58.59046 * 15 14 12 44 44 H 1.09000 * 109.49848 * 178.68322 * 15 14 12 45 45 H 1.09001 * 109.58770 * 174.42208 * 16 15 14 46 46 H 1.08999 * 109.58858 * 294.70554 * 16 15 14 47 47 H 0.97010 * 119.99817 * 179.97438 * 21 20 18 48 48 H 1.08995 * 109.47649 * 300.69960 * 28 26 17 49 49 H 1.09004 * 109.47515 * 60.70263 * 28 26 17 50 50 H 1.09000 * 109.47156 * 180.69487 * 28 26 17 51 51 H 1.07999 * 120.00174 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2591 2.0738 -1.1973 5 6 2.7244 3.3752 -1.1973 6 6 2.9594 4.0255 0.0000 7 6 2.7285 3.3741 1.1970 8 6 2.9851 4.0825 2.5021 9 6 4.4080 3.8389 2.9345 10 8 5.1414 3.1567 2.2505 11 7 4.8658 4.3790 4.0813 12 6 6.2488 4.1417 4.5020 13 1 6.5490 3.1343 4.2139 14 6 7.1699 5.1614 3.8280 15 6 8.6189 4.8938 4.2411 16 6 8.7506 5.0526 5.7590 17 7 7.7658 4.1800 6.4130 18 6 8.1566 3.2797 7.3679 19 1 7.5993 2.3652 7.5080 20 6 9.2689 3.5423 8.1556 21 7 9.7704 4.7583 8.2016 22 14 10.0540 2.1700 9.1506 23 1 10.5090 1.0929 8.2351 24 1 11.2181 2.7060 9.9006 25 1 9.0592 1.6200 10.1063 26 6 6.3534 4.2911 6.0230 27 1 5.9679 5.2660 6.3218 28 6 5.5441 3.1857 6.7038 29 6 2.2626 2.0724 1.1970 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.0758 1.5658 -2.1326 36 1 2.9048 3.8843 -2.1326 37 1 3.3233 5.0422 0.0000 38 1 2.8229 5.1526 2.3727 39 1 2.3039 3.7012 3.2627 40 1 4.2794 4.9249 4.6283 41 1 7.0786 5.0732 2.7454 42 1 6.8845 6.1675 4.1355 43 1 8.8971 3.8792 3.9559 44 1 9.2768 5.6056 3.7424 45 1 9.7554 4.7672 6.0705 46 1 8.5632 6.0901 6.0356 47 1 10.5476 4.9420 8.7524 48 1 5.9366 2.2129 6.4076 49 1 5.6198 3.2937 7.7859 50 1 4.4992 3.2627 6.4033 51 1 2.0829 1.5631 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993522065.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:04 Heat of formation + Delta-G solvation = -11.638983 kcal Electronic energy + Delta-G solvation = -28431.540642 eV Core-core repulsion = 24716.297261 eV Total energy + Delta-G solvation = -3715.243381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.13346 -39.15939 -37.56806 -34.61678 -34.21962 -32.71759 -32.36842 -31.62714 -29.74001 -29.31502 -27.58849 -26.02806 -24.97454 -24.11365 -22.62720 -21.89298 -20.74256 -20.65038 -19.94429 -19.23583 -16.92128 -16.65881 -16.31659 -15.92829 -15.73442 -15.15974 -14.82469 -14.73474 -14.02173 -13.88910 -13.83690 -13.75032 -13.55884 -13.33432 -13.22921 -12.99260 -12.81946 -12.55162 -12.21059 -12.04680 -11.89506 -11.69063 -11.53619 -11.42939 -11.10767 -10.99782 -10.90998 -10.90167 -10.75164 -10.56825 -10.28410 -10.12053 -10.04069 -9.86791 -9.57797 -9.35907 -8.84162 -8.66883 -8.63452 -8.44217 -6.67533 -5.79292 -3.23680 1.26200 1.33860 2.87123 3.35747 3.38590 3.43988 3.46206 3.80160 4.49082 4.50739 4.56387 4.72525 4.93151 5.01103 5.04965 5.11299 5.15077 5.28881 5.30664 5.33935 5.40713 5.42956 5.49612 5.53471 5.63249 5.67488 5.68587 5.80908 5.89671 5.97811 5.99345 6.02818 6.10272 6.22129 6.34315 6.38149 6.40808 6.48824 6.53891 6.54615 6.65316 6.74521 6.76331 6.87149 6.94002 6.98898 7.08369 7.40981 7.68161 7.79705 7.81471 8.43367 8.51258 9.20211 9.82950 10.39068 11.29234 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.002481 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.931639 B =11282.686094 C =12001.521639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.057 4.057 8 C -0.105 4.105 9 C 0.511 3.489 10 O -0.534 6.534 11 N -0.721 5.721 12 C 0.131 3.869 13 H 0.084 0.916 14 C -0.116 4.116 15 C -0.140 4.140 16 C 0.169 3.831 17 N -0.582 5.582 18 C -0.252 4.252 19 H 0.070 0.930 20 C 0.004 3.996 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.168 3.832 27 H 0.027 0.973 28 C -0.136 4.136 29 C -0.102 4.102 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.395 0.605 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.089 0.911 46 H 0.019 0.981 47 H 0.254 0.746 48 H 0.054 0.946 49 H 0.063 0.937 50 H 0.038 0.962 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.091 -1.536 -15.141 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.058 4.058 8 C -0.145 4.145 9 C 0.296 3.704 10 O -0.410 6.410 11 N -0.371 5.371 12 C 0.026 3.974 13 H 0.102 0.898 14 C -0.155 4.155 15 C -0.180 4.180 16 C 0.044 3.956 17 N -0.306 5.306 18 C -0.381 4.381 19 H 0.087 0.913 20 C -0.195 4.195 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.060 3.940 27 H 0.045 0.955 28 C -0.194 4.194 29 C -0.120 4.120 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.229 0.771 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.107 0.893 46 H 0.037 0.963 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.057 0.943 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.391 -1.984 -15.496 23.377 hybrid contribution 0.298 -0.228 0.778 0.864 sum -17.093 -2.212 -14.717 22.664 Atomic orbital electron populations 1.21743 0.94805 1.01600 1.02126 1.20541 0.96041 0.92792 1.02935 1.19819 0.99259 0.96046 0.93107 1.20962 1.00630 0.95012 0.97333 1.21050 0.99640 0.95019 0.97804 1.20951 0.99806 1.00040 0.92019 1.19265 0.98447 0.94369 0.93692 1.20714 0.95301 1.02321 0.96172 1.20411 0.88997 0.79816 0.81158 1.90727 1.58475 1.38445 1.53344 1.46160 1.14518 1.52882 1.23586 1.21762 0.78952 0.99847 0.96870 0.89750 1.21752 0.96300 0.98430 0.98990 1.22185 0.94406 1.00750 1.00687 1.20844 0.95786 0.92750 0.86245 1.44032 0.99460 1.43717 1.43344 1.19126 1.11223 0.97501 1.10284 0.91254 1.25070 1.00775 0.95897 0.97753 1.70013 1.24942 1.17934 1.41854 0.86374 0.78879 0.81689 0.79841 1.20989 1.21646 1.20892 1.20560 0.87591 0.96371 0.89469 0.95545 1.21811 0.96935 0.99149 1.01467 1.20838 0.99656 0.93934 0.97597 0.92547 0.92657 0.92485 0.91113 0.90975 0.86442 0.86227 0.86371 0.88158 0.88137 0.77125 0.93289 0.92852 0.92575 0.93066 0.89265 0.96334 0.93597 0.92707 0.91810 0.94309 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.15 0.37 -0.66 16 2 C -0.09 -0.73 6.06 -27.88 -0.17 -0.90 16 3 C -0.08 -0.88 5.13 -104.62 -0.54 -1.42 16 4 C -0.12 -1.25 9.70 -39.59 -0.38 -1.63 16 5 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 6 C -0.11 -1.25 9.70 -39.58 -0.38 -1.64 16 7 C -0.06 -0.68 4.37 -104.63 -0.46 -1.13 16 8 C -0.11 -1.08 5.83 -29.04 -0.17 -1.25 16 9 C 0.51 7.42 7.79 -10.98 -0.09 7.33 16 10 O -0.53 -10.18 15.70 5.55 0.09 -10.09 16 11 N -0.72 -10.16 4.57 -53.69 -0.25 -10.41 16 12 C 0.13 2.37 1.99 -67.81 -0.14 2.24 16 13 H 0.08 1.79 7.58 -51.93 -0.39 1.39 16 14 C -0.12 -2.11 5.46 -26.69 -0.15 -2.25 16 15 C -0.14 -2.81 6.08 -26.61 -0.16 -2.97 16 16 C 0.17 4.02 5.29 -3.71 -0.02 4.00 16 17 N -0.58 -14.18 2.99 -164.77 -0.49 -14.67 16 18 C -0.25 -6.70 8.61 -15.06 -0.13 -6.83 16 19 H 0.07 1.81 6.20 -52.49 -0.33 1.48 16 20 C 0.00 0.10 4.96 -17.43 -0.09 0.01 16 21 N -0.90 -25.78 11.14 55.49 0.62 -25.16 16 22 Si 0.90 21.55 29.58 -169.99 -5.03 16.52 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.17 3.35 3.03 -67.60 -0.21 3.14 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 28 C -0.14 -2.50 7.84 37.15 0.29 -2.21 16 29 C -0.10 -1.19 9.36 -39.58 -0.37 -1.56 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 40 H 0.40 4.41 8.60 -40.82 -0.35 4.06 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.05 1.07 7.40 -51.93 -0.38 0.68 16 49 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 50 H 0.04 0.57 7.78 -51.93 -0.40 0.17 16 51 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 403.91 15.07 6.09 6.09 Total: -1.00 -31.81 403.91 -11.04 -42.84 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.88 Total: 4.22 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -3.18 Total: -9.34 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.12 Total: -50.24 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.81 -11.04 -42.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993522065.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.203 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds