Wall clock time and date at job start Tue Mar 31 2020 16:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47429 * 2 1 4 4 C 1.38253 * 120.00000 * 270.18812 * 3 2 1 5 5 C 1.38207 * 120.00083 * 180.22868 * 4 3 2 6 6 C 1.38265 * 120.00105 * 359.81210 * 5 4 3 7 7 C 1.38215 * 119.99618 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99981 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46924 * 269.97974 * 8 7 6 10 10 O 1.21284 * 120.00509 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00126 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00279 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.49792 * 325.00008 * 12 11 9 14 14 C 1.53048 * 109.49844 * 85.06190 * 12 11 9 15 15 C 1.53034 * 109.53792 * 181.31735 * 14 12 11 16 16 C 1.53191 * 109.31341 * 298.63603 * 15 14 12 17 17 N 1.46929 * 108.77716 * 54.64016 * 16 15 14 18 18 C 1.36935 * 120.63505 * 126.39115 * 17 16 15 19 19 H 1.07998 * 119.99497 * 209.01577 * 18 17 16 20 20 C 1.38806 * 120.00029 * 29.01297 * 18 17 16 21 21 N 1.31621 * 119.99960 * 15.02638 * 20 18 17 22 22 Si 1.86805 * 120.00219 * 195.02260 * 20 18 17 23 23 H 1.48504 * 109.46597 * 60.00339 * 22 20 18 24 24 H 1.48501 * 109.47036 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46915 * 300.00443 * 22 20 18 26 26 C 1.46942 * 118.76069 * 306.40910 * 17 16 15 27 27 H 1.09002 * 109.56208 * 293.78918 * 26 17 16 28 28 C 1.52990 * 109.61402 * 173.35771 * 26 17 16 29 29 C 1.38217 * 119.99759 * 89.99386 * 3 2 1 30 30 H 1.08998 * 109.47314 * 300.00160 * 1 2 3 31 31 H 1.09004 * 109.46931 * 60.00581 * 1 2 3 32 32 H 1.09001 * 109.47180 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47788 * 239.99233 * 2 1 3 34 34 H 1.09004 * 109.46931 * 119.99419 * 2 1 3 35 35 H 1.08001 * 119.99702 * 0.02562 * 4 3 2 36 36 H 1.08002 * 120.00409 * 179.78815 * 5 4 3 37 37 H 1.07994 * 119.99907 * 179.97438 * 6 5 4 38 38 H 1.09006 * 109.47189 * 29.97426 * 8 7 6 39 39 H 1.08997 * 109.47818 * 149.97582 * 8 7 6 40 40 H 0.97004 * 119.99994 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.45715 * 301.34020 * 14 12 11 42 42 H 1.09005 * 109.45711 * 61.29744 * 14 12 11 43 43 H 1.09002 * 109.50006 * 58.59046 * 15 14 12 44 44 H 1.09000 * 109.49848 * 178.68322 * 15 14 12 45 45 H 1.09001 * 109.58770 * 174.42208 * 16 15 14 46 46 H 1.08999 * 109.58858 * 294.70554 * 16 15 14 47 47 H 0.97010 * 119.99817 * 179.97438 * 21 20 18 48 48 H 1.08995 * 109.47649 * 300.69960 * 28 26 17 49 49 H 1.09004 * 109.47515 * 60.70263 * 28 26 17 50 50 H 1.09000 * 109.47156 * 180.69487 * 28 26 17 51 51 H 1.07999 * 120.00174 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2591 2.0738 -1.1973 5 6 2.7244 3.3752 -1.1973 6 6 2.9594 4.0255 0.0000 7 6 2.7285 3.3741 1.1970 8 6 2.9851 4.0825 2.5021 9 6 4.4080 3.8389 2.9345 10 8 5.1414 3.1567 2.2505 11 7 4.8658 4.3790 4.0813 12 6 6.2488 4.1417 4.5020 13 1 6.5490 3.1343 4.2139 14 6 7.1699 5.1614 3.8280 15 6 8.6189 4.8938 4.2411 16 6 8.7506 5.0526 5.7590 17 7 7.7658 4.1800 6.4130 18 6 8.1566 3.2797 7.3679 19 1 7.5993 2.3652 7.5080 20 6 9.2689 3.5423 8.1556 21 7 9.7704 4.7583 8.2016 22 14 10.0540 2.1700 9.1506 23 1 10.5090 1.0929 8.2351 24 1 11.2181 2.7060 9.9006 25 1 9.0592 1.6200 10.1063 26 6 6.3534 4.2911 6.0230 27 1 5.9679 5.2660 6.3218 28 6 5.5441 3.1857 6.7038 29 6 2.2626 2.0724 1.1970 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.0758 1.5658 -2.1326 36 1 2.9048 3.8843 -2.1326 37 1 3.3233 5.0422 0.0000 38 1 2.8229 5.1526 2.3727 39 1 2.3039 3.7012 3.2627 40 1 4.2794 4.9249 4.6283 41 1 7.0786 5.0732 2.7454 42 1 6.8845 6.1675 4.1355 43 1 8.8971 3.8792 3.9559 44 1 9.2768 5.6056 3.7424 45 1 9.7554 4.7672 6.0705 46 1 8.5632 6.0901 6.0356 47 1 10.5476 4.9420 8.7524 48 1 5.9366 2.2129 6.4076 49 1 5.6198 3.2937 7.7859 50 1 4.4992 3.2627 6.4033 51 1 2.0829 1.5631 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993522065.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:03 Heat of formation + Delta-G solvation = -28.475411 kcal Electronic energy + Delta-G solvation = -28432.270725 eV Core-core repulsion = 24716.297261 eV Total energy + Delta-G solvation = -3715.973463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.22811 -40.20235 -39.07045 -35.87372 -35.28162 -34.26818 -33.49592 -33.19446 -31.06715 -30.33151 -28.66137 -27.58986 -26.80477 -24.78400 -24.03985 -22.91522 -22.33026 -21.73558 -21.21721 -20.65143 -18.36419 -17.94085 -17.49548 -17.17342 -16.79822 -16.63139 -15.86555 -15.85471 -15.57577 -15.52653 -15.06321 -14.77768 -14.67861 -14.51195 -14.40660 -14.26322 -13.99661 -13.75706 -13.35719 -13.23652 -12.96822 -12.83430 -12.77750 -12.69366 -12.58466 -12.51961 -12.36779 -12.12804 -12.01998 -11.82048 -11.76968 -11.68840 -11.61235 -11.60026 -11.18218 -10.82457 -10.52137 -9.94877 -9.65218 -9.46620 -8.65098 -7.85359 -5.31261 0.45438 0.54050 1.46223 1.49302 1.54924 1.75062 2.23777 2.54329 2.93696 3.30033 3.63726 3.70969 3.84885 3.89650 4.00078 4.04591 4.15319 4.22480 4.26028 4.31661 4.36907 4.42244 4.51792 4.54356 4.60315 4.62902 4.65011 4.71878 4.78268 4.81115 4.88926 4.93567 5.03056 5.04529 5.09877 5.13241 5.21401 5.23953 5.26534 5.30772 5.39294 5.46128 5.51645 5.60125 5.63552 5.69752 5.70031 5.75777 5.77410 6.17415 6.41924 6.69311 7.16509 7.39245 7.87231 8.38281 9.21318 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.002481 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.931639 B =11282.686094 C =12001.521639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.126 4.126 6 C -0.127 4.127 7 C -0.074 4.074 8 C -0.094 4.094 9 C 0.512 3.488 10 O -0.582 6.582 11 N -0.709 5.709 12 C 0.148 3.852 13 H 0.052 0.948 14 C -0.108 4.108 15 C -0.131 4.131 16 C 0.176 3.824 17 N -0.601 5.601 18 C -0.254 4.254 19 H 0.071 0.929 20 C -0.049 4.049 21 N -0.933 5.933 22 Si 0.961 3.039 23 H -0.283 1.283 24 H -0.295 1.295 25 H -0.274 1.274 26 C 0.165 3.835 27 H 0.035 0.965 28 C -0.127 4.127 29 C -0.121 4.121 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.414 0.586 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.005 0.995 47 H 0.249 0.751 48 H 0.037 0.963 49 H 0.048 0.952 50 H 0.078 0.922 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.406 -1.515 -16.084 26.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.148 4.148 5 C -0.144 4.144 6 C -0.145 4.145 7 C -0.075 4.075 8 C -0.133 4.133 9 C 0.300 3.700 10 O -0.462 6.462 11 N -0.361 5.361 12 C 0.041 3.959 13 H 0.070 0.930 14 C -0.147 4.147 15 C -0.170 4.170 16 C 0.050 3.950 17 N -0.325 5.325 18 C -0.384 4.384 19 H 0.089 0.911 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.789 3.211 23 H -0.210 1.210 24 H -0.221 1.221 25 H -0.199 1.199 26 C 0.058 3.942 27 H 0.053 0.947 28 C -0.185 4.185 29 C -0.139 4.139 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.251 0.749 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.023 0.977 47 H 0.058 0.942 48 H 0.056 0.944 49 H 0.067 0.933 50 H 0.096 0.904 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.766 -1.953 -16.436 25.780 hybrid contribution 0.972 -0.247 0.998 1.414 sum -18.794 -2.200 -15.438 24.421 Atomic orbital electron populations 1.21707 0.93650 1.02388 1.02072 1.20581 0.97011 0.91636 1.03094 1.20136 0.98985 0.97025 0.93138 1.21266 1.00318 0.95203 0.98053 1.21374 0.99179 0.95299 0.98514 1.21220 1.00145 1.00777 0.92356 1.19505 0.98789 0.94689 0.94492 1.20735 0.92263 1.04200 0.96150 1.21146 0.90317 0.78370 0.80201 1.90715 1.60163 1.40543 1.54742 1.45934 1.13061 1.53110 1.23991 1.21224 0.81270 0.98079 0.95298 0.93016 1.21668 0.94816 0.99097 0.99072 1.22027 0.96522 1.00449 0.98025 1.20633 0.94143 0.91727 0.88488 1.44278 1.01571 1.43441 1.43230 1.19409 1.11039 0.97959 1.09974 0.91094 1.25755 1.01637 0.97731 0.99346 1.70155 1.25293 1.19529 1.42984 0.85443 0.77900 0.79176 0.78547 1.20984 1.22083 1.19947 1.20732 0.85419 0.97267 0.90779 0.94711 1.21726 0.98922 0.97569 1.00270 1.21058 1.00350 0.94316 0.98196 0.92865 0.92426 0.91274 0.90398 0.91369 0.84621 0.84351 0.85377 0.85200 0.85457 0.74916 0.92930 0.91427 0.94100 0.91058 0.92682 0.97687 0.94220 0.94356 0.93308 0.90353 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.89 71.98 0.71 -1.05 16 2 C -0.09 -1.36 6.06 29.85 0.18 -1.17 16 3 C -0.09 -1.88 5.13 -19.87 -0.10 -1.99 16 4 C -0.13 -2.50 9.70 22.27 0.22 -2.28 16 5 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 6 C -0.13 -2.68 9.70 22.27 0.22 -2.46 16 7 C -0.07 -1.62 4.37 -19.87 -0.09 -1.70 16 8 C -0.09 -1.64 5.83 29.10 0.17 -1.47 16 9 C 0.51 13.77 7.79 87.66 0.68 14.45 16 10 O -0.58 -21.77 15.70 -3.04 -0.05 -21.81 16 11 N -0.71 -18.19 4.57 -442.15 -2.02 -20.21 16 12 C 0.15 5.19 1.99 45.07 0.09 5.28 16 13 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 14 C -0.11 -3.78 5.46 30.62 0.17 -3.61 16 15 C -0.13 -5.22 6.08 30.67 0.19 -5.03 16 16 C 0.18 8.51 5.29 86.36 0.46 8.97 16 17 N -0.60 -29.58 2.99 -675.21 -2.02 -31.60 16 18 C -0.25 -13.66 8.61 84.03 0.72 -12.94 16 19 H 0.07 3.73 6.20 -2.91 -0.02 3.71 16 20 C -0.05 -2.74 4.96 84.86 0.42 -2.32 16 21 N -0.93 -54.68 11.14 21.65 0.24 -54.44 16 22 Si 0.96 45.00 29.58 68.60 2.03 47.03 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 C 0.16 6.41 3.03 44.97 0.14 6.54 16 27 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 28 C -0.13 -4.51 7.84 71.98 0.56 -3.94 16 29 C -0.12 -2.67 9.36 22.27 0.21 -2.46 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 34 H 0.07 1.11 8.09 -2.38 -0.02 1.09 16 35 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 38 H 0.13 1.52 8.09 -2.38 -0.02 1.50 16 39 H 0.13 1.56 8.09 -2.39 -0.02 1.54 16 40 H 0.41 7.70 8.60 -92.71 -0.80 6.90 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 43 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.05 3.04 6.06 -2.39 -0.01 3.02 16 46 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 48 H 0.04 1.46 7.40 -2.39 -0.02 1.45 16 49 H 0.05 1.86 7.66 -2.38 -0.02 1.84 16 50 H 0.08 2.11 7.78 -2.39 -0.02 2.09 16 51 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -70.82 403.91 3.45 -67.37 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.10 Total: 23.07 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 5.17 Total: -9.41 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -3.80 Total: -106.25 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -70.82 3.45 -67.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993522065.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.894 kcal (2) G-P(sol) polarization free energy of solvation -70.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds