Wall clock time and date at job start Tue Mar 31 2020 16:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47233 * 2 1 4 4 C 1.38258 * 119.99992 * 269.97700 * 3 2 1 5 5 C 1.38214 * 119.99749 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.00240 * 359.74792 * 5 4 3 7 7 C 1.38218 * 120.00021 * 0.52889 * 6 5 4 8 8 C 1.50691 * 120.00315 * 179.74389 * 7 6 5 9 9 C 1.50700 * 109.47303 * 269.72876 * 8 7 6 10 10 O 1.21280 * 119.99644 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00181 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99887 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.49831 * 34.93321 * 12 11 9 14 14 C 1.53036 * 109.52233 * 274.85331 * 12 11 9 15 15 C 1.53042 * 109.53582 * 301.39580 * 14 12 11 16 16 C 1.53192 * 109.31819 * 298.63550 * 15 14 12 17 17 N 1.46931 * 108.77071 * 54.63608 * 16 15 14 18 18 C 1.36936 * 120.62840 * 126.41742 * 17 16 15 19 19 H 1.08000 * 119.99696 * 209.01027 * 18 17 16 20 20 C 1.38808 * 120.00060 * 29.00267 * 18 17 16 21 21 N 1.31615 * 119.99919 * 15.02559 * 20 18 17 22 22 Si 1.86803 * 119.99890 * 195.01758 * 20 18 17 23 23 H 1.48497 * 109.46802 * 90.00462 * 22 20 18 24 24 H 1.48504 * 109.47224 * 210.00444 * 22 20 18 25 25 H 1.48498 * 109.47058 * 330.00637 * 22 20 18 26 26 C 1.46921 * 118.73792 * 306.39188 * 17 16 15 27 27 H 1.09002 * 109.58652 * 293.82142 * 26 17 16 28 28 C 1.52999 * 109.58422 * 173.39897 * 26 17 16 29 29 C 1.38212 * 119.99930 * 89.99828 * 3 2 1 30 30 H 1.09003 * 109.46486 * 300.00096 * 1 2 3 31 31 H 1.08997 * 109.47099 * 59.99773 * 1 2 3 32 32 H 1.08998 * 109.47094 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47207 * 240.00048 * 2 1 3 34 34 H 1.08997 * 109.47099 * 120.00227 * 2 1 3 35 35 H 1.07998 * 120.00083 * 359.97438 * 4 3 2 36 36 H 1.08006 * 119.99639 * 179.97438 * 5 4 3 37 37 H 1.07997 * 120.00083 * 180.27972 * 6 5 4 38 38 H 1.08997 * 109.47523 * 149.72572 * 8 7 6 39 39 H 1.09009 * 109.46932 * 29.73038 * 8 7 6 40 40 H 0.96999 * 119.99887 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.46186 * 61.41528 * 14 12 11 42 42 H 1.08998 * 109.46119 * 181.39360 * 14 12 11 43 43 H 1.09007 * 109.49884 * 178.68458 * 15 14 12 44 44 H 1.09005 * 109.49833 * 58.59429 * 15 14 12 45 45 H 1.08995 * 109.58548 * 294.84886 * 16 15 14 46 46 H 1.08997 * 109.58985 * 174.42054 * 16 15 14 47 47 H 0.97007 * 119.99487 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.47328 * 60.00009 * 28 26 17 49 49 H 1.09009 * 109.47170 * 180.02562 * 28 26 17 50 50 H 1.08997 * 109.47349 * 299.99703 * 28 26 17 51 51 H 1.07998 * 120.00230 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2633 2.0724 -1.1973 5 6 2.7235 3.3756 -1.1973 6 6 2.9480 4.0295 0.0000 7 6 2.7227 3.3762 1.1970 8 6 2.9729 4.0868 2.5021 9 6 4.3960 3.8507 2.9379 10 8 5.1342 3.1717 2.2561 11 7 4.8481 4.3932 4.0859 12 6 6.2314 4.1631 4.5098 13 1 6.8779 4.1186 3.6334 14 6 6.3183 2.8414 5.2763 15 6 5.3860 2.8908 6.4890 16 6 5.8290 4.0214 7.4230 17 7 5.8877 5.2730 6.6556 18 6 5.2136 6.3857 7.0830 19 1 4.8603 7.1117 6.3657 20 6 4.9842 6.5804 8.4381 21 7 5.6519 5.8753 9.3265 22 14 3.7279 7.8432 9.0007 23 1 2.3964 7.1969 9.1217 24 1 4.1337 8.3915 10.3198 25 1 3.6549 8.9451 8.0079 26 6 6.6839 5.3082 5.4214 27 1 7.7396 5.1867 5.6640 28 6 6.4687 6.6456 4.7102 29 6 2.2627 2.0723 1.1970 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.0840 1.5630 -2.1326 36 1 2.9043 3.8845 -2.1327 37 1 3.3033 5.0493 0.0000 38 1 2.2918 3.7027 3.2614 39 1 2.8055 5.1560 2.3714 40 1 4.2575 4.9359 4.6314 41 1 6.0202 2.0220 4.6223 42 1 7.3430 2.6833 5.6126 43 1 5.4308 1.9406 7.0213 44 1 4.3645 3.0736 6.1554 45 1 6.8149 3.7949 7.8288 46 1 5.1116 4.1252 8.2370 47 1 5.4917 6.0116 10.2735 48 1 6.7795 7.4596 5.3651 49 1 7.0599 6.6696 3.7946 50 1 5.4132 6.7604 4.4637 51 1 2.0823 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993522069.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:07 Heat of formation + Delta-G solvation = -10.899604 kcal Electronic energy + Delta-G solvation = -28959.587830 eV Core-core repulsion = 25244.376511 eV Total energy + Delta-G solvation = -3715.211319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.06526 -39.16550 -37.52118 -34.52557 -33.88898 -32.60037 -32.26023 -31.63450 -29.71188 -29.40415 -27.50947 -26.11279 -25.02151 -24.05585 -22.52532 -21.86638 -20.97283 -20.69129 -19.77711 -18.70224 -16.88853 -16.56914 -16.37858 -15.84161 -15.45394 -15.15536 -14.80956 -14.68246 -14.01301 -13.99134 -13.75225 -13.69281 -13.45176 -13.22962 -13.06719 -13.02663 -12.81553 -12.58286 -12.14225 -11.93810 -11.86963 -11.80036 -11.37902 -11.27611 -11.23267 -10.99855 -10.92997 -10.83805 -10.73754 -10.61625 -10.52870 -10.12193 -10.02718 -9.67143 -9.50968 -9.32050 -8.77065 -8.59517 -8.55167 -8.42858 -6.70768 -5.83863 -3.29378 1.34036 1.40800 3.02212 3.32114 3.39162 3.40785 3.53946 3.94305 4.42219 4.59557 4.64267 4.80397 5.00261 5.08346 5.16739 5.22346 5.25612 5.30123 5.32965 5.36718 5.46103 5.54094 5.56318 5.59484 5.62763 5.71724 5.74378 5.75860 5.95415 5.96254 6.06379 6.09403 6.11666 6.21472 6.33412 6.41387 6.45063 6.52886 6.56057 6.62488 6.67112 6.67882 6.77537 6.93122 6.95995 7.01170 7.13199 7.36803 7.65005 7.74872 8.06132 8.39176 8.68065 9.15333 9.78383 10.35499 11.23897 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.002829 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.143260 B = 9895.510567 C =10021.547863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.123 4.123 5 C -0.117 4.117 6 C -0.111 4.111 7 C -0.052 4.052 8 C -0.107 4.107 9 C 0.510 3.490 10 O -0.547 6.547 11 N -0.702 5.702 12 C 0.135 3.865 13 H 0.074 0.926 14 C -0.121 4.121 15 C -0.139 4.139 16 C 0.171 3.829 17 N -0.586 5.586 18 C -0.255 4.255 19 H 0.071 0.929 20 C 0.005 3.995 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.159 3.841 27 H 0.038 0.962 28 C -0.135 4.135 29 C -0.103 4.103 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.408 0.592 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.052 0.948 45 H 0.017 0.983 46 H 0.088 0.912 47 H 0.254 0.746 48 H 0.063 0.937 49 H 0.038 0.962 50 H 0.053 0.947 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 -7.006 -16.518 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.141 4.141 5 C -0.135 4.135 6 C -0.129 4.129 7 C -0.053 4.053 8 C -0.147 4.147 9 C 0.296 3.704 10 O -0.425 6.425 11 N -0.353 5.353 12 C 0.029 3.971 13 H 0.092 0.908 14 C -0.159 4.159 15 C -0.178 4.178 16 C 0.045 3.955 17 N -0.310 5.310 18 C -0.385 4.385 19 H 0.089 0.911 20 C -0.194 4.194 21 N -0.544 5.544 22 Si 0.731 3.269 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.052 3.948 27 H 0.056 0.944 28 C -0.193 4.193 29 C -0.121 4.121 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.244 0.756 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.035 0.965 46 H 0.106 0.894 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.057 0.943 50 H 0.072 0.928 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.170 -7.446 -16.789 19.716 hybrid contribution -0.780 0.894 0.785 1.422 sum -7.949 -6.553 -16.004 19.033 Atomic orbital electron populations 1.21746 0.94821 1.01553 1.02181 1.20532 0.96047 0.92832 1.02808 1.19807 0.99339 0.96046 0.93116 1.20943 1.00858 0.95055 0.97260 1.21039 0.99781 0.94963 0.97767 1.20961 0.99902 1.00013 0.92003 1.19286 0.98022 0.94215 0.93742 1.20712 0.95579 1.02395 0.96004 1.20376 0.89020 0.79846 0.81172 1.90678 1.58098 1.39245 1.54526 1.46013 1.14270 1.52245 1.22807 1.21493 0.82314 0.96403 0.96905 0.90784 1.21763 1.00042 0.96755 0.97371 1.22136 0.98942 0.99725 0.97042 1.20817 0.99353 0.82601 0.92714 1.44167 1.54645 1.08552 1.23607 1.19168 1.28236 1.00816 0.90267 0.91145 1.25098 0.99317 0.98539 0.96438 1.70020 1.40748 1.43089 1.00584 0.86326 0.81415 0.81184 0.78011 1.21480 1.21848 1.20455 1.20720 0.94434 0.92053 0.87607 0.94425 1.21777 1.00994 0.97996 0.98485 1.20843 0.99676 0.94013 0.97554 0.92504 0.92658 0.92527 0.91192 0.91040 0.86526 0.86294 0.86352 0.88143 0.88137 0.75581 0.93213 0.92063 0.93559 0.92887 0.96487 0.89423 0.93634 0.91804 0.94256 0.92802 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.90 37.16 0.37 -0.76 16 2 C -0.08 -0.76 6.06 -27.88 -0.17 -0.93 16 3 C -0.08 -0.94 5.13 -104.63 -0.54 -1.48 16 4 C -0.12 -1.33 9.70 -39.58 -0.38 -1.72 16 5 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 6 C -0.11 -1.36 9.70 -39.58 -0.38 -1.74 16 7 C -0.05 -0.68 4.37 -104.63 -0.46 -1.13 16 8 C -0.11 -1.32 5.83 -29.04 -0.17 -1.49 16 9 C 0.51 8.09 7.79 -10.98 -0.09 8.00 16 10 O -0.55 -10.52 15.70 5.56 0.09 -10.44 16 11 N -0.70 -11.38 3.46 -53.69 -0.19 -11.57 16 12 C 0.14 2.39 2.32 -67.81 -0.16 2.23 16 13 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 14 C -0.12 -2.15 5.58 -26.69 -0.15 -2.29 16 15 C -0.14 -2.61 5.93 -26.61 -0.16 -2.77 16 16 C 0.17 3.85 5.29 -3.71 -0.02 3.83 16 17 N -0.59 -13.23 2.65 -164.78 -0.44 -13.67 16 18 C -0.26 -6.29 8.60 -15.06 -0.13 -6.42 16 19 H 0.07 1.68 6.21 -52.49 -0.33 1.35 16 20 C 0.01 0.13 4.96 -17.43 -0.09 0.05 16 21 N -0.90 -24.91 11.14 55.49 0.62 -24.29 16 22 Si 0.90 20.53 29.58 -169.99 -5.03 15.50 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.16 3.10 3.20 -67.60 -0.22 2.88 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 C -0.13 -2.40 7.73 37.16 0.29 -2.11 16 29 C -0.10 -1.29 9.36 -39.58 -0.37 -1.66 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.10 1.09 8.09 -51.93 -0.42 0.67 16 39 H 0.10 1.05 8.08 -51.92 -0.42 0.63 16 40 H 0.41 6.67 7.77 -40.82 -0.32 6.35 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 44 H 0.05 1.00 7.53 -51.93 -0.39 0.60 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 47 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 48 H 0.06 1.22 7.62 -51.93 -0.40 0.83 16 49 H 0.04 0.62 8.14 -51.92 -0.42 0.19 16 50 H 0.05 0.93 6.40 -51.93 -0.33 0.60 16 51 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -29.33 400.66 -10.90 -40.24 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -8.78 Total: 7.39 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -3.22 Total: -9.21 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.00 Total: -49.52 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.33 -10.90 -40.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993522069.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.338 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds