Wall clock time and date at job start Tue Mar 31 2020 16:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47233 * 2 1 4 4 C 1.38258 * 119.99992 * 269.97700 * 3 2 1 5 5 C 1.38214 * 119.99749 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.00240 * 359.74792 * 5 4 3 7 7 C 1.38218 * 120.00021 * 0.52889 * 6 5 4 8 8 C 1.50691 * 120.00315 * 179.74389 * 7 6 5 9 9 C 1.50700 * 109.47303 * 269.72876 * 8 7 6 10 10 O 1.21280 * 119.99644 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00181 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99887 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.49831 * 34.93321 * 12 11 9 14 14 C 1.53036 * 109.52233 * 274.85331 * 12 11 9 15 15 C 1.53042 * 109.53582 * 301.39580 * 14 12 11 16 16 C 1.53192 * 109.31819 * 298.63550 * 15 14 12 17 17 N 1.46931 * 108.77071 * 54.63608 * 16 15 14 18 18 C 1.36936 * 120.62840 * 126.41742 * 17 16 15 19 19 H 1.08000 * 119.99696 * 209.01027 * 18 17 16 20 20 C 1.38808 * 120.00060 * 29.00267 * 18 17 16 21 21 N 1.31615 * 119.99919 * 15.02559 * 20 18 17 22 22 Si 1.86803 * 119.99890 * 195.01758 * 20 18 17 23 23 H 1.48497 * 109.46802 * 90.00462 * 22 20 18 24 24 H 1.48504 * 109.47224 * 210.00444 * 22 20 18 25 25 H 1.48498 * 109.47058 * 330.00637 * 22 20 18 26 26 C 1.46921 * 118.73792 * 306.39188 * 17 16 15 27 27 H 1.09002 * 109.58652 * 293.82142 * 26 17 16 28 28 C 1.52999 * 109.58422 * 173.39897 * 26 17 16 29 29 C 1.38212 * 119.99930 * 89.99828 * 3 2 1 30 30 H 1.09003 * 109.46486 * 300.00096 * 1 2 3 31 31 H 1.08997 * 109.47099 * 59.99773 * 1 2 3 32 32 H 1.08998 * 109.47094 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47207 * 240.00048 * 2 1 3 34 34 H 1.08997 * 109.47099 * 120.00227 * 2 1 3 35 35 H 1.07998 * 120.00083 * 359.97438 * 4 3 2 36 36 H 1.08006 * 119.99639 * 179.97438 * 5 4 3 37 37 H 1.07997 * 120.00083 * 180.27972 * 6 5 4 38 38 H 1.08997 * 109.47523 * 149.72572 * 8 7 6 39 39 H 1.09009 * 109.46932 * 29.73038 * 8 7 6 40 40 H 0.96999 * 119.99887 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.46186 * 61.41528 * 14 12 11 42 42 H 1.08998 * 109.46119 * 181.39360 * 14 12 11 43 43 H 1.09007 * 109.49884 * 178.68458 * 15 14 12 44 44 H 1.09005 * 109.49833 * 58.59429 * 15 14 12 45 45 H 1.08995 * 109.58548 * 294.84886 * 16 15 14 46 46 H 1.08997 * 109.58985 * 174.42054 * 16 15 14 47 47 H 0.97007 * 119.99487 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.47328 * 60.00009 * 28 26 17 49 49 H 1.09009 * 109.47170 * 180.02562 * 28 26 17 50 50 H 1.08997 * 109.47349 * 299.99703 * 28 26 17 51 51 H 1.07998 * 120.00230 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2633 2.0724 -1.1973 5 6 2.7235 3.3756 -1.1973 6 6 2.9480 4.0295 0.0000 7 6 2.7227 3.3762 1.1970 8 6 2.9729 4.0868 2.5021 9 6 4.3960 3.8507 2.9379 10 8 5.1342 3.1717 2.2561 11 7 4.8481 4.3932 4.0859 12 6 6.2314 4.1631 4.5098 13 1 6.8779 4.1186 3.6334 14 6 6.3183 2.8414 5.2763 15 6 5.3860 2.8908 6.4890 16 6 5.8290 4.0214 7.4230 17 7 5.8877 5.2730 6.6556 18 6 5.2136 6.3857 7.0830 19 1 4.8603 7.1117 6.3657 20 6 4.9842 6.5804 8.4381 21 7 5.6519 5.8753 9.3265 22 14 3.7279 7.8432 9.0007 23 1 2.3964 7.1969 9.1217 24 1 4.1337 8.3915 10.3198 25 1 3.6549 8.9451 8.0079 26 6 6.6839 5.3082 5.4214 27 1 7.7396 5.1867 5.6640 28 6 6.4687 6.6456 4.7102 29 6 2.2627 2.0723 1.1970 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.0840 1.5630 -2.1326 36 1 2.9043 3.8845 -2.1327 37 1 3.3033 5.0493 0.0000 38 1 2.2918 3.7027 3.2614 39 1 2.8055 5.1560 2.3714 40 1 4.2575 4.9359 4.6314 41 1 6.0202 2.0220 4.6223 42 1 7.3430 2.6833 5.6126 43 1 5.4308 1.9406 7.0213 44 1 4.3645 3.0736 6.1554 45 1 6.8149 3.7949 7.8288 46 1 5.1116 4.1252 8.2370 47 1 5.4917 6.0116 10.2735 48 1 6.7795 7.4596 5.3651 49 1 7.0599 6.6696 3.7946 50 1 5.4132 6.7604 4.4637 51 1 2.0823 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993522069.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:06 Heat of formation + Delta-G solvation = -24.158980 kcal Electronic energy + Delta-G solvation = -28960.162800 eV Core-core repulsion = 25244.376511 eV Total energy + Delta-G solvation = -3715.786289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.26867 -40.24967 -38.98113 -35.60579 -35.25592 -34.03124 -33.49762 -33.12845 -31.17627 -30.33976 -28.61576 -27.62399 -26.79993 -24.77792 -23.94188 -23.01563 -22.38253 -21.97836 -20.84134 -20.24979 -18.25148 -18.11302 -17.39468 -17.03775 -16.77711 -16.53106 -16.01873 -15.79862 -15.68024 -15.17924 -15.06916 -14.80528 -14.57960 -14.44872 -14.41547 -14.20483 -14.00660 -13.74495 -13.52172 -13.03780 -12.93535 -12.86235 -12.78081 -12.66831 -12.57648 -12.44501 -12.30962 -12.18136 -12.09859 -11.89475 -11.67592 -11.66481 -11.60858 -11.34843 -11.02792 -10.81219 -10.47983 -9.85231 -9.64788 -9.45975 -8.60166 -7.79660 -5.26439 0.46530 0.54340 1.51544 1.53586 1.60567 1.78387 2.38844 2.55664 2.96034 3.36634 3.60483 3.72708 3.85210 3.96419 4.02332 4.08916 4.18447 4.22694 4.26282 4.31456 4.40492 4.41162 4.52267 4.58469 4.60712 4.64632 4.67739 4.72178 4.79873 4.80914 4.96146 5.00339 5.02915 5.06383 5.09744 5.14413 5.22804 5.24050 5.25858 5.35826 5.39480 5.47681 5.57420 5.60540 5.70067 5.71150 5.76227 5.76599 5.82449 6.17752 6.45991 6.76506 7.21152 7.40765 7.91284 8.44652 9.26934 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.002829 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.143260 B = 9895.510567 C =10021.547863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.091 4.091 4 C -0.129 4.129 5 C -0.123 4.123 6 C -0.128 4.128 7 C -0.069 4.069 8 C -0.100 4.100 9 C 0.514 3.486 10 O -0.581 6.581 11 N -0.699 5.699 12 C 0.145 3.855 13 H 0.075 0.925 14 C -0.115 4.115 15 C -0.124 4.124 16 C 0.179 3.821 17 N -0.595 5.595 18 C -0.245 4.245 19 H 0.083 0.917 20 C -0.051 4.051 21 N -0.938 5.938 22 Si 0.960 3.040 23 H -0.287 1.287 24 H -0.306 1.306 25 H -0.266 1.266 26 C 0.157 3.843 27 H 0.026 0.974 28 C -0.127 4.127 29 C -0.123 4.123 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.409 0.591 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.055 0.945 45 H -0.008 1.008 46 H 0.057 0.943 47 H 0.246 0.754 48 H 0.046 0.954 49 H 0.062 0.938 50 H 0.060 0.940 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 -6.980 -18.840 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.147 4.147 5 C -0.141 4.141 6 C -0.146 4.146 7 C -0.070 4.070 8 C -0.139 4.139 9 C 0.301 3.699 10 O -0.461 6.461 11 N -0.350 5.350 12 C 0.039 3.961 13 H 0.093 0.907 14 C -0.153 4.153 15 C -0.163 4.163 16 C 0.053 3.947 17 N -0.319 5.319 18 C -0.375 4.375 19 H 0.100 0.900 20 C -0.246 4.246 21 N -0.585 5.585 22 Si 0.790 3.210 23 H -0.214 1.214 24 H -0.233 1.233 25 H -0.190 1.190 26 C 0.050 3.950 27 H 0.044 0.956 28 C -0.184 4.184 29 C -0.141 4.141 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.145 0.855 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.246 0.754 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.010 0.990 46 H 0.076 0.924 47 H 0.055 0.945 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.514 -7.411 -19.145 22.225 hybrid contribution -0.309 0.846 1.425 1.686 sum -8.823 -6.565 -17.720 20.855 Atomic orbital electron populations 1.21715 0.93830 1.02397 1.01975 1.20576 0.96858 0.91563 1.03196 1.20124 0.98879 0.97092 0.93000 1.21274 1.00243 0.95164 0.98033 1.21374 0.99100 0.95250 0.98382 1.21201 1.00343 1.00684 0.92325 1.19434 0.98789 0.94598 0.94168 1.20716 0.93110 1.03845 0.96253 1.20916 0.90088 0.78655 0.80233 1.90664 1.59376 1.40693 1.55395 1.45963 1.13544 1.52398 1.23095 1.21232 0.83351 0.95303 0.96253 0.90734 1.21706 0.99852 0.96990 0.96791 1.21938 0.99077 0.98664 0.96642 1.20591 0.97145 0.84119 0.92865 1.44341 1.55129 1.08173 1.24272 1.19525 1.26846 1.00845 0.90281 0.89971 1.25785 1.01329 1.00662 0.96857 1.70183 1.42770 1.45223 1.00298 0.85366 0.79208 0.79472 0.76974 1.21387 1.23342 1.19047 1.20834 0.93416 0.93983 0.86751 0.95592 1.21694 1.01817 0.96097 0.98818 1.21025 1.00536 0.94311 0.98206 0.93191 0.92368 0.91168 0.90070 0.91387 0.84337 0.84136 0.85507 0.86659 0.86004 0.75435 0.92882 0.91922 0.92243 0.92615 0.99036 0.92429 0.94525 0.93467 0.91954 0.92124 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.90 71.98 0.71 -1.22 16 2 C -0.08 -1.38 6.06 29.85 0.18 -1.20 16 3 C -0.09 -1.93 5.13 -19.87 -0.10 -2.03 16 4 C -0.13 -2.54 9.70 22.27 0.22 -2.32 16 5 C -0.12 -2.49 10.05 22.27 0.22 -2.27 16 6 C -0.13 -2.92 9.70 22.27 0.22 -2.70 16 7 C -0.07 -1.70 4.37 -19.87 -0.09 -1.79 16 8 C -0.10 -2.26 5.83 29.10 0.17 -2.09 16 9 C 0.51 15.38 7.79 87.66 0.68 16.07 16 10 O -0.58 -21.59 15.70 -3.03 -0.05 -21.64 16 11 N -0.70 -21.42 3.46 -442.17 -1.53 -22.95 16 12 C 0.15 4.95 2.32 45.07 0.10 5.05 16 13 H 0.07 2.59 7.58 -2.39 -0.02 2.57 16 14 C -0.11 -3.95 5.58 30.62 0.17 -3.78 16 15 C -0.12 -4.57 5.93 30.67 0.18 -4.39 16 16 C 0.18 8.18 5.29 86.36 0.46 8.64 16 17 N -0.60 -26.82 2.65 -675.24 -1.79 -28.61 16 18 C -0.24 -11.93 8.60 84.03 0.72 -11.21 16 19 H 0.08 3.77 6.21 -2.91 -0.02 3.75 16 20 C -0.05 -2.67 4.96 84.86 0.42 -2.25 16 21 N -0.94 -53.29 11.14 21.65 0.24 -53.05 16 22 Si 0.96 42.37 29.58 68.60 2.03 44.40 16 23 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 24 H -0.31 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 C 0.16 5.98 3.20 44.98 0.14 6.12 16 27 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 28 C -0.13 -4.29 7.73 71.98 0.56 -3.73 16 29 C -0.12 -2.96 9.36 22.27 0.21 -2.75 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 34 H 0.07 1.14 8.09 -2.39 -0.02 1.13 16 35 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.12 2.26 8.09 -2.39 -0.02 2.24 16 39 H 0.12 2.22 8.08 -2.38 -0.02 2.20 16 40 H 0.41 12.55 7.77 -92.71 -0.72 11.83 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 44 H 0.06 2.03 7.53 -2.38 -0.02 2.01 16 45 H -0.01 -0.43 8.14 -2.39 -0.02 -0.44 16 46 H 0.06 3.00 6.06 -2.39 -0.01 2.99 16 47 H 0.25 13.75 8.31 -92.70 -0.77 12.98 16 48 H 0.05 1.75 7.62 -2.39 -0.02 1.73 16 49 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 50 H 0.06 1.96 6.40 -2.39 -0.02 1.94 16 51 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -63.19 400.66 4.27 -58.93 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.18 Total: 30.79 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.18 Total: -7.87 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -3.08 Total: -104.60 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -63.19 4.27 -58.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993522069.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.767 kcal (2) G-P(sol) polarization free energy of solvation -63.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds