Wall clock time and date at job start Tue Mar 31 2020 16:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47120 * 2 1 4 4 C 1.38257 * 120.00351 * 89.99686 * 3 2 1 5 5 C 1.38212 * 120.00302 * 179.97438 * 4 3 2 6 6 C 1.38256 * 119.99854 * 0.02562 * 5 4 3 7 7 C 1.38216 * 120.00014 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99983 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46826 * 90.00618 * 8 7 6 10 10 O 1.21290 * 119.99919 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00032 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99871 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.49956 * 34.93482 * 12 11 9 14 14 C 1.53039 * 109.49721 * 274.83062 * 12 11 9 15 15 C 1.53042 * 109.53851 * 178.68615 * 14 12 11 16 16 C 1.53188 * 109.31165 * 61.36571 * 15 14 12 17 17 N 1.46923 * 108.77950 * 305.36309 * 16 15 14 18 18 C 1.36928 * 120.63454 * 233.63014 * 17 16 15 19 19 H 1.08003 * 120.00357 * 150.16875 * 18 17 16 20 20 C 1.38813 * 120.00075 * 330.17428 * 18 17 16 21 21 N 1.31618 * 120.00209 * 344.47392 * 20 18 17 22 22 Si 1.86805 * 120.00191 * 164.47869 * 20 18 17 23 23 H 1.48506 * 109.46964 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47262 * 119.99476 * 22 20 18 25 25 H 1.48500 * 109.46631 * 239.99823 * 22 20 18 26 26 C 1.46936 * 118.73387 * 53.60881 * 17 16 15 27 27 H 1.08997 * 109.58197 * 66.17898 * 26 17 16 28 28 C 1.52994 * 109.70159 * 186.53272 * 26 17 16 29 29 C 1.38216 * 119.99653 * 269.72732 * 3 2 1 30 30 H 1.09003 * 109.47141 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47402 * 300.00027 * 1 2 3 32 32 H 1.08999 * 109.47665 * 60.00356 * 1 2 3 33 33 H 1.08995 * 109.46887 * 239.99735 * 2 1 3 34 34 H 1.09001 * 109.46941 * 119.99500 * 2 1 3 35 35 H 1.07996 * 119.99738 * 0.02562 * 4 3 2 36 36 H 1.07997 * 120.00068 * 180.02562 * 5 4 3 37 37 H 1.07998 * 120.00117 * 180.02562 * 6 5 4 38 38 H 1.08997 * 109.46797 * 210.00393 * 8 7 6 39 39 H 1.08999 * 109.47237 * 330.00556 * 8 7 6 40 40 H 0.96994 * 119.99991 * 359.97438 * 11 9 8 41 41 H 1.08999 * 109.46403 * 298.70468 * 14 12 11 42 42 H 1.09003 * 109.45568 * 58.66787 * 14 12 11 43 43 H 1.09005 * 109.49966 * 301.41683 * 15 14 12 44 44 H 1.09001 * 109.50102 * 181.31891 * 15 14 12 45 45 H 1.09004 * 109.58465 * 185.57764 * 16 15 14 46 46 H 1.08999 * 109.70189 * 65.23005 * 16 15 14 47 47 H 0.96991 * 120.00597 * 180.02562 * 21 20 18 48 48 H 1.09003 * 109.47188 * 179.36128 * 28 26 17 49 49 H 1.08997 * 109.47711 * 299.36280 * 28 26 17 50 50 H 1.09003 * 109.47548 * 59.35978 * 28 26 17 51 51 H 1.07997 * 120.00211 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0727 1.1973 5 6 2.7239 3.3755 1.1973 6 6 2.9544 4.0272 -0.0001 7 6 2.7240 3.3756 -1.1970 8 6 2.9758 4.0858 -2.5022 9 6 4.3991 3.8482 -2.9369 10 8 5.1365 3.1695 -2.2538 11 7 4.8528 4.3908 -4.0841 12 6 6.2366 4.1603 -4.5063 13 1 6.5423 3.1547 -4.2178 14 6 7.1530 5.1860 -3.8352 15 6 8.6029 4.9256 -4.2500 16 6 8.7315 5.0828 -5.7683 17 7 7.7506 4.2040 -6.4196 18 6 8.1449 3.3041 -7.3733 19 1 7.6002 2.3805 -7.5024 20 6 9.2449 3.5789 -8.1743 21 7 9.7214 4.8040 -8.2402 22 14 10.0487 2.2099 -9.1588 23 1 9.3288 0.9346 -8.9124 24 1 9.9901 2.5403 -10.6053 25 1 11.4664 2.0664 -8.7408 26 6 6.3384 4.3089 -6.0276 27 1 5.9475 5.2814 -6.3268 28 6 5.5310 3.2007 -6.7064 29 6 2.2680 2.0704 -1.1970 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8932 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0830 1.5635 2.1326 36 1 2.9042 3.8845 2.1326 37 1 3.3151 5.0452 -0.0001 38 1 2.2950 3.7019 -3.2619 39 1 2.8093 5.1551 -2.3721 40 1 4.2632 4.9340 -4.6302 41 1 6.8618 6.1900 -4.1438 42 1 7.0638 5.0988 -2.7523 43 1 8.8870 3.9129 -3.9637 44 1 9.2576 5.6417 -3.7533 45 1 9.7374 4.8023 -6.0808 46 1 8.5374 6.1181 -6.0483 47 1 10.4897 4.9961 -8.8001 48 1 4.4863 3.2751 -6.4042 49 1 5.6047 3.3081 -7.7886 50 1 5.9266 2.2292 -6.4100 51 1 2.0926 1.5597 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993522071.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:10 Heat of formation + Delta-G solvation = -12.213420 kcal Electronic energy + Delta-G solvation = -28429.665754 eV Core-core repulsion = 24714.397463 eV Total energy + Delta-G solvation = -3715.268291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.13394 -39.15988 -37.56867 -34.61622 -34.21926 -32.71933 -32.37100 -31.62186 -29.74410 -29.32527 -27.59063 -26.03246 -24.97147 -24.11323 -22.63138 -21.89591 -20.74294 -20.65254 -19.94728 -19.24182 -16.92167 -16.65892 -16.31644 -15.92866 -15.73857 -15.16204 -14.82377 -14.73258 -14.02322 -13.89189 -13.83393 -13.75240 -13.55914 -13.33601 -13.22902 -12.99383 -12.83052 -12.55723 -12.21060 -12.04937 -11.89480 -11.69305 -11.54297 -11.42851 -11.10995 -10.99865 -10.92977 -10.90375 -10.75735 -10.54834 -10.28681 -10.12548 -10.02450 -9.87412 -9.58513 -9.35233 -8.84172 -8.66978 -8.63745 -8.45279 -6.66897 -5.80138 -3.24714 1.26103 1.33891 2.87046 3.35691 3.37025 3.45046 3.47159 3.80059 4.48758 4.50678 4.56380 4.72494 4.93124 5.01068 5.04859 5.11272 5.15041 5.28831 5.30349 5.33935 5.40520 5.43001 5.49613 5.53154 5.62985 5.67444 5.68526 5.80473 5.89660 5.97581 5.99308 6.02753 6.10049 6.22031 6.34279 6.38131 6.40778 6.48776 6.53747 6.54449 6.64729 6.74134 6.75909 6.86617 6.93952 6.99185 7.08374 7.39752 7.66254 7.79886 7.81901 8.43097 8.51174 9.19703 9.82382 10.39129 11.28598 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019413 B = 0.002480 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.979676 B =11289.124742 C =12006.443885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.083 4.083 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.057 4.057 8 C -0.105 4.105 9 C 0.511 3.489 10 O -0.534 6.534 11 N -0.721 5.721 12 C 0.131 3.869 13 H 0.085 0.915 14 C -0.116 4.116 15 C -0.140 4.140 16 C 0.170 3.830 17 N -0.582 5.582 18 C -0.251 4.251 19 H 0.070 0.930 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.168 3.832 27 H 0.027 0.973 28 C -0.136 4.136 29 C -0.102 4.102 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.395 0.605 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.019 0.981 47 H 0.253 0.747 48 H 0.038 0.962 49 H 0.063 0.937 50 H 0.054 0.946 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.050 -1.650 15.269 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.058 4.058 8 C -0.145 4.145 9 C 0.296 3.704 10 O -0.410 6.410 11 N -0.371 5.371 12 C 0.026 3.974 13 H 0.103 0.897 14 C -0.155 4.155 15 C -0.180 4.180 16 C 0.044 3.956 17 N -0.306 5.306 18 C -0.381 4.381 19 H 0.088 0.912 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.202 1.202 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.060 3.940 27 H 0.044 0.956 28 C -0.193 4.193 29 C -0.120 4.120 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.229 0.771 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.037 0.963 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.082 0.918 50 H 0.073 0.927 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.357 -2.105 15.628 23.451 hybrid contribution 0.328 -0.204 -0.784 0.874 sum -17.030 -2.309 14.844 22.709 Atomic orbital electron populations 1.21742 0.94804 1.01595 1.02125 1.20540 0.96045 0.92787 1.02929 1.19820 0.99252 0.96086 0.93108 1.20965 1.00611 0.95013 0.97330 1.21048 0.99684 0.94991 0.97803 1.20950 0.99780 1.00048 0.92016 1.19271 0.98513 0.94320 0.93689 1.20718 0.95304 1.02326 0.96165 1.20413 0.89041 0.79773 0.81155 1.90728 1.58254 1.38601 1.53420 1.46157 1.14404 1.53001 1.23580 1.21759 0.78960 0.99844 0.96861 0.89736 1.21751 0.96295 0.98422 0.99005 1.22181 0.94433 1.00770 1.00616 1.20820 0.95675 0.92738 0.86328 1.44035 0.99553 1.43541 1.43425 1.19196 1.12052 0.96891 1.09924 0.91217 1.25090 1.00931 0.95827 0.97625 1.70031 1.25885 1.17355 1.41331 0.86246 0.79372 0.81772 0.79528 1.20210 1.21746 1.21560 1.20559 0.87608 0.96379 0.89453 0.95562 1.21808 0.96935 0.99132 1.01473 1.20838 0.99644 0.93911 0.97597 0.92489 0.92665 0.92543 0.90975 0.91120 0.86446 0.86230 0.86371 0.88136 0.88151 0.77123 0.92840 0.93277 0.92551 0.93049 0.89515 0.96269 0.93704 0.94308 0.91813 0.92721 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.09 -0.73 6.07 -27.89 -0.17 -0.90 16 3 C -0.08 -0.88 5.13 -104.62 -0.54 -1.42 16 4 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 5 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 6 C -0.11 -1.25 9.70 -39.58 -0.38 -1.63 16 7 C -0.06 -0.68 4.37 -104.62 -0.46 -1.13 16 8 C -0.11 -1.08 5.83 -29.03 -0.17 -1.25 16 9 C 0.51 7.41 7.79 -10.99 -0.09 7.32 16 10 O -0.53 -10.17 15.70 5.55 0.09 -10.08 16 11 N -0.72 -10.15 4.57 -53.69 -0.25 -10.39 16 12 C 0.13 2.37 2.00 -67.81 -0.14 2.23 16 13 H 0.08 1.79 7.58 -51.93 -0.39 1.39 16 14 C -0.12 -2.10 5.46 -26.69 -0.15 -2.25 16 15 C -0.14 -2.79 6.08 -26.61 -0.16 -2.96 16 16 C 0.17 4.02 5.28 -3.71 -0.02 4.00 16 17 N -0.58 -14.16 2.99 -164.78 -0.49 -14.65 16 18 C -0.25 -6.67 8.59 -15.06 -0.13 -6.80 16 19 H 0.07 1.82 6.24 -52.48 -0.33 1.50 16 20 C 0.00 0.11 4.94 -17.43 -0.09 0.02 16 21 N -0.90 -25.76 11.23 55.49 0.62 -25.13 16 22 Si 0.90 21.53 29.58 -169.99 -5.03 16.50 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.17 3.34 3.03 -67.60 -0.20 3.14 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 C -0.14 -2.50 7.85 37.15 0.29 -2.20 16 29 C -0.10 -1.18 9.36 -39.58 -0.37 -1.55 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 40 H 0.40 4.41 8.60 -40.82 -0.35 4.06 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.09 2.30 6.15 -51.93 -0.32 1.98 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.04 0.58 7.78 -51.93 -0.40 0.17 16 49 H 0.06 1.25 7.67 -51.93 -0.40 0.85 16 50 H 0.05 1.07 7.41 -51.93 -0.38 0.68 16 51 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 404.08 15.07 6.09 6.09 Total: -1.00 -31.85 404.08 -11.03 -42.89 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -8.89 Total: 4.06 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -3.18 Total: -9.28 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.11 Total: -50.18 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.85 -11.03 -42.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993522071.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.673 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds