Wall clock time and date at job start Tue Mar 31 2020 16:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47120 * 2 1 4 4 C 1.38257 * 120.00351 * 89.99686 * 3 2 1 5 5 C 1.38212 * 120.00302 * 179.97438 * 4 3 2 6 6 C 1.38256 * 119.99854 * 0.02562 * 5 4 3 7 7 C 1.38216 * 120.00014 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99983 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46826 * 90.00618 * 8 7 6 10 10 O 1.21290 * 119.99919 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00032 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99871 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.49956 * 34.93482 * 12 11 9 14 14 C 1.53039 * 109.49721 * 274.83062 * 12 11 9 15 15 C 1.53042 * 109.53851 * 178.68615 * 14 12 11 16 16 C 1.53188 * 109.31165 * 61.36571 * 15 14 12 17 17 N 1.46923 * 108.77950 * 305.36309 * 16 15 14 18 18 C 1.36928 * 120.63454 * 233.63014 * 17 16 15 19 19 H 1.08003 * 120.00357 * 150.16875 * 18 17 16 20 20 C 1.38813 * 120.00075 * 330.17428 * 18 17 16 21 21 N 1.31618 * 120.00209 * 344.47392 * 20 18 17 22 22 Si 1.86805 * 120.00191 * 164.47869 * 20 18 17 23 23 H 1.48506 * 109.46964 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47262 * 119.99476 * 22 20 18 25 25 H 1.48500 * 109.46631 * 239.99823 * 22 20 18 26 26 C 1.46936 * 118.73387 * 53.60881 * 17 16 15 27 27 H 1.08997 * 109.58197 * 66.17898 * 26 17 16 28 28 C 1.52994 * 109.70159 * 186.53272 * 26 17 16 29 29 C 1.38216 * 119.99653 * 269.72732 * 3 2 1 30 30 H 1.09003 * 109.47141 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47402 * 300.00027 * 1 2 3 32 32 H 1.08999 * 109.47665 * 60.00356 * 1 2 3 33 33 H 1.08995 * 109.46887 * 239.99735 * 2 1 3 34 34 H 1.09001 * 109.46941 * 119.99500 * 2 1 3 35 35 H 1.07996 * 119.99738 * 0.02562 * 4 3 2 36 36 H 1.07997 * 120.00068 * 180.02562 * 5 4 3 37 37 H 1.07998 * 120.00117 * 180.02562 * 6 5 4 38 38 H 1.08997 * 109.46797 * 210.00393 * 8 7 6 39 39 H 1.08999 * 109.47237 * 330.00556 * 8 7 6 40 40 H 0.96994 * 119.99991 * 359.97438 * 11 9 8 41 41 H 1.08999 * 109.46403 * 298.70468 * 14 12 11 42 42 H 1.09003 * 109.45568 * 58.66787 * 14 12 11 43 43 H 1.09005 * 109.49966 * 301.41683 * 15 14 12 44 44 H 1.09001 * 109.50102 * 181.31891 * 15 14 12 45 45 H 1.09004 * 109.58465 * 185.57764 * 16 15 14 46 46 H 1.08999 * 109.70189 * 65.23005 * 16 15 14 47 47 H 0.96991 * 120.00597 * 180.02562 * 21 20 18 48 48 H 1.09003 * 109.47188 * 179.36128 * 28 26 17 49 49 H 1.08997 * 109.47711 * 299.36280 * 28 26 17 50 50 H 1.09003 * 109.47548 * 59.35978 * 28 26 17 51 51 H 1.07997 * 120.00211 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0727 1.1973 5 6 2.7239 3.3755 1.1973 6 6 2.9544 4.0272 -0.0001 7 6 2.7240 3.3756 -1.1970 8 6 2.9758 4.0858 -2.5022 9 6 4.3991 3.8482 -2.9369 10 8 5.1365 3.1695 -2.2538 11 7 4.8528 4.3908 -4.0841 12 6 6.2366 4.1603 -4.5063 13 1 6.5423 3.1547 -4.2178 14 6 7.1530 5.1860 -3.8352 15 6 8.6029 4.9256 -4.2500 16 6 8.7315 5.0828 -5.7683 17 7 7.7506 4.2040 -6.4196 18 6 8.1449 3.3041 -7.3733 19 1 7.6002 2.3805 -7.5024 20 6 9.2449 3.5789 -8.1743 21 7 9.7214 4.8040 -8.2402 22 14 10.0487 2.2099 -9.1588 23 1 9.3288 0.9346 -8.9124 24 1 9.9901 2.5403 -10.6053 25 1 11.4664 2.0664 -8.7408 26 6 6.3384 4.3089 -6.0276 27 1 5.9475 5.2814 -6.3268 28 6 5.5310 3.2007 -6.7064 29 6 2.2680 2.0704 -1.1970 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8932 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0830 1.5635 2.1326 36 1 2.9042 3.8845 2.1326 37 1 3.3151 5.0452 -0.0001 38 1 2.2950 3.7019 -3.2619 39 1 2.8093 5.1551 -2.3721 40 1 4.2632 4.9340 -4.6302 41 1 6.8618 6.1900 -4.1438 42 1 7.0638 5.0988 -2.7523 43 1 8.8870 3.9129 -3.9637 44 1 9.2576 5.6417 -3.7533 45 1 9.7374 4.8023 -6.0808 46 1 8.5374 6.1181 -6.0483 47 1 10.4897 4.9961 -8.8001 48 1 4.4863 3.2751 -6.4042 49 1 5.6047 3.3081 -7.7886 50 1 5.9266 2.2292 -6.4100 51 1 2.0926 1.5597 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993522071.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:09 Heat of formation + Delta-G solvation = -29.087710 kcal Electronic energy + Delta-G solvation = -28430.397478 eV Core-core repulsion = 24714.397463 eV Total energy + Delta-G solvation = -3716.000015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.22727 -40.20170 -39.06911 -35.87219 -35.27982 -34.27188 -33.49076 -33.19341 -31.07727 -30.33378 -28.66226 -27.59226 -26.80295 -24.78278 -24.04452 -22.91595 -22.33042 -21.73449 -21.21998 -20.65298 -18.36549 -17.93865 -17.49679 -17.17689 -16.79602 -16.62684 -15.86444 -15.85508 -15.57507 -15.53644 -15.06105 -14.77819 -14.68068 -14.51276 -14.40974 -14.26811 -13.99664 -13.75638 -13.35709 -13.24710 -12.96643 -12.84655 -12.81710 -12.68485 -12.58162 -12.50698 -12.35971 -12.12523 -12.00546 -11.81155 -11.76989 -11.68901 -11.61184 -11.60506 -11.17708 -10.82241 -10.54090 -9.94823 -9.65158 -9.46629 -8.64605 -7.86215 -5.32369 0.45442 0.54152 1.44798 1.47980 1.57108 1.75149 2.23817 2.53861 2.93714 3.29449 3.63520 3.71050 3.84963 3.89695 4.00133 4.04634 4.15304 4.22385 4.26066 4.31735 4.36924 4.42309 4.51729 4.54232 4.60436 4.62926 4.65104 4.71970 4.78257 4.81202 4.88791 4.93575 5.03078 5.04544 5.09911 5.13163 5.21453 5.23991 5.26547 5.30847 5.39319 5.46300 5.51090 5.60145 5.62675 5.69824 5.70515 5.75796 5.76624 6.17456 6.41887 6.69406 7.16165 7.39311 7.86603 8.38311 9.20884 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019413 B = 0.002480 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.979676 B =11289.124742 C =12006.443885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.126 4.126 6 C -0.127 4.127 7 C -0.074 4.074 8 C -0.094 4.094 9 C 0.512 3.488 10 O -0.582 6.582 11 N -0.709 5.709 12 C 0.148 3.852 13 H 0.052 0.948 14 C -0.108 4.108 15 C -0.130 4.130 16 C 0.177 3.823 17 N -0.601 5.601 18 C -0.252 4.252 19 H 0.071 0.929 20 C -0.049 4.049 21 N -0.933 5.933 22 Si 0.960 3.040 23 H -0.269 1.269 24 H -0.291 1.291 25 H -0.293 1.293 26 C 0.165 3.835 27 H 0.035 0.965 28 C -0.127 4.127 29 C -0.121 4.121 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.414 0.586 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.041 0.959 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.006 0.994 47 H 0.249 0.751 48 H 0.078 0.922 49 H 0.048 0.952 50 H 0.037 0.963 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.339 -1.646 16.269 26.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.148 4.148 5 C -0.144 4.144 6 C -0.145 4.145 7 C -0.075 4.075 8 C -0.134 4.134 9 C 0.300 3.700 10 O -0.462 6.462 11 N -0.361 5.361 12 C 0.041 3.959 13 H 0.070 0.930 14 C -0.147 4.147 15 C -0.170 4.170 16 C 0.051 3.949 17 N -0.325 5.325 18 C -0.382 4.382 19 H 0.088 0.912 20 C -0.244 4.244 21 N -0.579 5.579 22 Si 0.789 3.211 23 H -0.193 1.193 24 H -0.218 1.218 25 H -0.220 1.220 26 C 0.058 3.942 27 H 0.053 0.947 28 C -0.185 4.185 29 C -0.139 4.139 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.251 0.749 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.024 0.976 47 H 0.058 0.942 48 H 0.097 0.903 49 H 0.067 0.933 50 H 0.056 0.944 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.705 -2.090 16.627 25.867 hybrid contribution 0.993 -0.217 -1.024 1.443 sum -18.712 -2.307 15.604 24.473 Atomic orbital electron populations 1.21707 0.93657 1.02386 1.02069 1.20580 0.97010 0.91632 1.03096 1.20134 0.98967 0.97062 0.93132 1.21268 1.00302 0.95206 0.98053 1.21372 0.99216 0.95273 0.98515 1.21218 1.00119 1.00787 0.92353 1.19509 0.98850 0.94635 0.94489 1.20738 0.92274 1.04207 0.96134 1.21145 0.90359 0.78327 0.80204 1.90717 1.59942 1.40688 1.54812 1.45931 1.12954 1.53230 1.23978 1.21222 0.81277 0.98097 0.95272 0.92984 1.21668 0.94818 0.99074 0.99094 1.22023 0.96531 1.00514 0.97925 1.20611 0.93995 0.91707 0.88584 1.44278 1.01665 1.43260 1.43309 1.19450 1.11820 0.97314 1.09607 0.91178 1.25768 1.01843 0.97634 0.99184 1.70162 1.26321 1.18951 1.42477 0.85319 0.78082 0.79743 0.78006 1.19297 1.21785 1.22036 1.20729 0.85436 0.97262 0.90779 0.94747 1.21724 0.98924 0.97539 1.00283 1.21058 1.00353 0.94300 0.98196 0.91275 0.92436 0.92865 0.91363 0.90397 0.84622 0.84352 0.85376 0.85468 0.85199 0.74921 0.91426 0.92902 0.94026 0.91032 0.92955 0.97638 0.94222 0.90349 0.93313 0.94398 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.89 71.98 0.71 -1.05 16 2 C -0.09 -1.35 6.07 29.85 0.18 -1.17 16 3 C -0.09 -1.88 5.13 -19.87 -0.10 -1.98 16 4 C -0.13 -2.49 9.70 22.27 0.22 -2.27 16 5 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 6 C -0.13 -2.67 9.70 22.27 0.22 -2.46 16 7 C -0.07 -1.62 4.37 -19.86 -0.09 -1.70 16 8 C -0.09 -1.64 5.83 29.10 0.17 -1.47 16 9 C 0.51 13.75 7.79 87.66 0.68 14.43 16 10 O -0.58 -21.72 15.70 -3.06 -0.05 -21.77 16 11 N -0.71 -18.16 4.57 -442.17 -2.02 -20.18 16 12 C 0.15 5.18 2.00 45.07 0.09 5.27 16 13 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 14 C -0.11 -3.76 5.46 30.62 0.17 -3.59 16 15 C -0.13 -5.18 6.08 30.67 0.19 -4.99 16 16 C 0.18 8.54 5.28 86.36 0.46 8.99 16 17 N -0.60 -29.53 2.99 -675.24 -2.02 -31.55 16 18 C -0.25 -13.55 8.59 84.04 0.72 -12.83 16 19 H 0.07 3.70 6.24 -2.91 -0.02 3.68 16 20 C -0.05 -2.71 4.94 84.86 0.42 -2.29 16 21 N -0.93 -54.67 11.23 21.65 0.24 -54.42 16 22 Si 0.96 45.02 29.58 68.60 2.03 47.05 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 C 0.16 6.40 3.03 44.97 0.14 6.54 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 C -0.13 -4.51 7.85 71.98 0.56 -3.94 16 29 C -0.12 -2.67 9.36 22.27 0.21 -2.46 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 34 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 35 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 36 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 38 H 0.13 1.56 8.09 -2.39 -0.02 1.54 16 39 H 0.13 1.52 8.09 -2.39 -0.02 1.50 16 40 H 0.41 7.69 8.60 -92.71 -0.80 6.89 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.05 2.88 6.15 -2.38 -0.01 2.86 16 46 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.25 14.15 8.31 -92.72 -0.77 13.38 16 48 H 0.08 2.11 7.78 -2.39 -0.02 2.09 16 49 H 0.05 1.86 7.67 -2.39 -0.02 1.84 16 50 H 0.04 1.45 7.41 -2.39 -0.02 1.43 16 51 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -70.89 404.08 3.45 -67.43 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.10 Total: 22.65 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 5.16 Total: -9.21 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -3.79 Total: -106.15 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.77 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -70.89 3.45 -67.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993522071.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.346 kcal (2) G-P(sol) polarization free energy of solvation -70.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds