Wall clock time and date at job start Tue Mar 31 2020 16:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47066 * 2 1 4 4 C 1.38233 * 120.00341 * 89.99625 * 3 2 1 5 5 C 1.38231 * 120.00038 * 179.97438 * 4 3 2 6 6 C 1.38243 * 119.99956 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99754 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.47231 * 89.99933 * 7 6 5 9 9 O 1.21281 * 119.99805 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99993 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99655 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.52892 * 34.91285 * 11 10 8 13 13 C 1.53046 * 109.49565 * 274.83210 * 11 10 8 14 14 C 1.53038 * 109.53742 * 301.42059 * 13 11 10 15 15 C 1.53194 * 109.31271 * 298.62896 * 14 13 11 16 16 N 1.46923 * 108.77245 * 54.63845 * 15 14 13 17 17 C 1.36942 * 120.62979 * 126.41509 * 16 15 14 18 18 H 1.07997 * 119.99974 * 209.00641 * 17 16 15 19 19 C 1.38808 * 119.99883 * 28.99952 * 17 16 15 20 20 N 1.31615 * 119.99919 * 15.03322 * 19 17 16 21 21 Si 1.86803 * 119.99890 * 195.02522 * 19 17 16 22 22 H 1.48497 * 109.46802 * 90.00462 * 21 19 17 23 23 H 1.48504 * 109.47224 * 210.00444 * 21 19 17 24 24 H 1.48498 * 109.47058 * 330.00637 * 21 19 17 25 25 C 1.46926 * 118.73975 * 306.39081 * 16 15 14 26 26 H 1.08998 * 109.58776 * 293.81905 * 25 16 15 27 27 C 1.53002 * 109.58597 * 173.53770 * 25 16 15 28 28 C 1.38230 * 119.99792 * 0.27268 * 6 5 4 29 29 C 1.38234 * 120.00451 * 359.53854 * 28 6 5 30 30 H 1.09004 * 109.47292 * 60.00399 * 1 2 3 31 31 H 1.09001 * 109.47073 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47873 * 300.00126 * 1 2 3 33 33 H 1.09002 * 109.47632 * 239.99387 * 2 1 3 34 34 H 1.09004 * 109.47292 * 119.99601 * 2 1 3 35 35 H 1.07998 * 119.99840 * 0.02562 * 4 3 2 36 36 H 1.08002 * 120.00319 * 180.02562 * 5 4 3 37 37 H 1.08996 * 109.47340 * 330.00215 * 7 6 5 38 38 H 1.08999 * 109.47152 * 209.99864 * 7 6 5 39 39 H 0.97001 * 120.00098 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.45821 * 61.43467 * 13 11 10 41 41 H 1.08994 * 109.46210 * 181.39805 * 13 11 10 42 42 H 1.09007 * 109.49534 * 178.68284 * 14 13 11 43 43 H 1.09006 * 109.50128 * 58.58548 * 14 13 11 44 44 H 1.08991 * 109.58654 * 294.85298 * 15 14 13 45 45 H 1.09002 * 109.58743 * 174.42524 * 15 14 13 46 46 H 0.97007 * 119.99487 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.46829 * 60.00372 * 27 25 16 48 48 H 1.09005 * 109.46983 * 179.97438 * 27 25 16 49 49 H 1.08993 * 109.47318 * 299.99873 * 27 25 16 50 50 H 1.08001 * 119.99899 * 179.72871 * 28 6 5 51 51 H 1.07994 * 120.00682 * 180.22717 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2626 2.0726 1.1971 5 6 2.7238 3.3757 1.1970 6 6 2.9553 4.0269 -0.0002 7 6 3.4587 5.4473 -0.0003 8 6 4.9658 5.4462 0.0005 9 8 5.5714 4.3954 0.0005 10 7 5.6405 6.6129 0.0001 11 6 7.1055 6.6117 0.0002 12 1 7.4693 5.7688 -0.5873 13 6 7.6161 6.4903 1.4379 14 6 7.0789 7.6557 2.2718 15 6 7.5911 8.9757 1.6868 16 7 7.2289 9.0344 0.2641 17 6 6.5421 10.1079 -0.2373 18 1 5.8875 9.9811 -1.0869 19 6 6.6873 11.3588 0.3465 20 7 7.6852 11.5871 1.1737 21 14 5.4665 12.7182 -0.0421 22 1 4.3452 12.6692 0.9303 23 1 6.1458 14.0354 0.0517 24 1 4.9379 12.5307 -1.4170 25 6 7.6179 7.9198 -0.6105 26 1 8.7041 7.8831 -0.6945 27 6 7.0027 8.1173 -1.9974 28 6 2.7201 3.3769 -1.1973 29 6 2.2625 2.0724 -1.1973 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3635 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0829 1.5634 2.1324 36 1 2.9042 3.8848 2.1323 37 1 3.0954 5.9616 0.8894 38 1 3.0962 5.9612 -0.8905 39 1 5.1562 7.4533 -0.0011 40 1 7.2732 5.5487 1.8667 41 1 8.7057 6.5145 1.4396 42 1 7.4238 7.5559 3.3011 43 1 5.9891 7.6467 2.2503 44 1 8.6749 9.0251 1.7902 45 1 7.1330 9.8118 2.2153 46 1 7.7869 12.4615 1.5814 47 1 7.3610 9.0543 -2.4237 48 1 7.2929 7.2897 -2.6448 49 1 5.9166 8.1486 -1.9120 50 1 2.8967 3.8871 -2.1326 51 1 2.0823 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993906875.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:20 Heat of formation + Delta-G solvation = -10.950424 kcal Electronic energy + Delta-G solvation = -28777.819524 eV Core-core repulsion = 25062.606001 eV Total energy + Delta-G solvation = -3715.213523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.05344 -39.17061 -37.53446 -34.71005 -33.88210 -32.44808 -31.82508 -31.18778 -30.92730 -29.40090 -27.27342 -26.11533 -25.02522 -23.51206 -22.75300 -22.05452 -20.95448 -20.71151 -19.99382 -18.70388 -16.87013 -16.52009 -16.19078 -15.87583 -15.42858 -15.18222 -14.77379 -14.66954 -14.01760 -13.91825 -13.84983 -13.69701 -13.53995 -13.30802 -13.10722 -13.04677 -12.82419 -12.58102 -12.17776 -11.95412 -11.82339 -11.78587 -11.35963 -11.26665 -11.22809 -10.99661 -10.92829 -10.88630 -10.73718 -10.61562 -10.52850 -10.12090 -10.02595 -9.66905 -9.49410 -9.31905 -8.89272 -8.55441 -8.50183 -8.42580 -6.70618 -5.83714 -3.29213 1.31242 1.43439 3.02632 3.32132 3.39164 3.40798 3.53609 3.94759 4.42264 4.57834 4.68395 4.78736 4.94132 4.98829 5.13855 5.24009 5.29009 5.30216 5.31809 5.35097 5.44761 5.55687 5.56378 5.59633 5.63356 5.65493 5.75422 5.76747 5.91502 5.96277 6.05707 6.07610 6.11787 6.21696 6.33377 6.40252 6.41779 6.53061 6.57909 6.62463 6.67265 6.68066 6.77670 6.93286 6.96072 7.01103 7.13394 7.36943 7.65132 7.74983 8.06500 8.39286 8.68437 9.15438 9.78482 10.35596 11.23995 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019330 B = 0.002637 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.154427 B =10614.406345 C =11055.689957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.060 4.060 7 C -0.106 4.106 8 C 0.510 3.490 9 O -0.548 6.548 10 N -0.702 5.702 11 C 0.136 3.864 12 H 0.074 0.926 13 C -0.121 4.121 14 C -0.139 4.139 15 C 0.171 3.829 16 N -0.586 5.586 17 C -0.255 4.255 18 H 0.071 0.929 19 C 0.005 3.995 20 N -0.900 5.900 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.159 3.841 26 H 0.038 0.962 27 C -0.135 4.135 28 C -0.103 4.103 29 C -0.118 4.118 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.408 0.592 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.046 0.954 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.088 0.912 46 H 0.253 0.747 47 H 0.063 0.937 48 H 0.038 0.962 49 H 0.053 0.947 50 H 0.119 0.881 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.238 -16.919 -1.705 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.060 4.060 7 C -0.146 4.146 8 C 0.296 3.704 9 O -0.426 6.426 10 N -0.353 5.353 11 C 0.029 3.971 12 H 0.092 0.908 13 C -0.159 4.159 14 C -0.179 4.179 15 C 0.045 3.955 16 N -0.310 5.310 17 C -0.384 4.384 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.544 5.544 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.205 1.205 25 C 0.052 3.948 26 H 0.056 0.944 27 C -0.192 4.192 28 C -0.121 4.121 29 C -0.136 4.136 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.244 0.756 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.057 0.943 49 H 0.072 0.928 50 H 0.137 0.863 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.739 -17.472 -1.641 20.574 hybrid contribution -0.635 1.303 -0.034 1.449 sum -11.374 -16.169 -1.675 19.840 Atomic orbital electron populations 1.21746 0.94874 1.01488 1.02209 1.20522 0.96019 0.92907 1.02693 1.19835 0.99702 0.96048 0.93292 1.20923 1.00484 0.94791 0.97363 1.20967 0.98749 0.94853 0.97471 1.19294 0.98401 0.94841 0.93461 1.20706 0.93519 0.95210 1.05206 1.20391 0.89260 0.84169 0.76616 1.90677 1.70260 1.31368 1.50271 1.46013 1.07670 1.08353 1.73302 1.21490 0.79424 0.99603 0.96575 0.90786 1.21763 1.00042 0.98291 0.95822 1.22137 1.00424 0.97733 0.97566 1.20817 0.96705 0.93657 0.84315 1.44168 1.65283 1.18354 1.03165 1.19162 1.18319 0.86096 1.14847 0.91156 1.25104 0.97031 0.97066 1.00249 1.70020 1.28802 1.22097 1.33494 0.86324 0.80811 0.81717 0.78068 1.21493 1.21851 1.20464 1.20722 0.96306 0.87312 0.90506 0.94439 1.21775 1.00879 1.00731 0.95854 1.20954 0.98868 0.94844 0.97428 1.20922 1.00537 0.94778 0.97347 0.92585 0.92581 0.92584 0.91195 0.91196 0.86395 0.86296 0.88147 0.88184 0.75578 0.93218 0.92071 0.93558 0.92876 0.96480 0.89418 0.93641 0.91810 0.94261 0.92799 0.86302 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.15 0.37 -0.66 16 2 C -0.08 -0.69 6.06 -27.89 -0.17 -0.86 16 3 C -0.09 -0.96 5.13 -104.62 -0.54 -1.50 16 4 C -0.12 -1.33 9.70 -39.59 -0.38 -1.72 16 5 C -0.10 -1.27 9.70 -39.58 -0.38 -1.66 16 6 C -0.06 -0.77 4.37 -104.62 -0.46 -1.23 16 7 C -0.11 -1.31 5.83 -29.03 -0.17 -1.48 16 8 C 0.51 8.08 7.79 -10.98 -0.09 7.99 16 9 O -0.55 -10.53 15.70 5.56 0.09 -10.44 16 10 N -0.70 -11.38 3.46 -53.68 -0.19 -11.57 16 11 C 0.14 2.39 2.33 -67.81 -0.16 2.24 16 12 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 13 C -0.12 -2.14 5.58 -26.69 -0.15 -2.29 16 14 C -0.14 -2.62 5.93 -26.61 -0.16 -2.77 16 15 C 0.17 3.85 5.29 -3.71 -0.02 3.83 16 16 N -0.59 -13.23 2.65 -164.78 -0.44 -13.67 16 17 C -0.25 -6.27 8.60 -15.06 -0.13 -6.40 16 18 H 0.07 1.67 6.21 -52.49 -0.33 1.35 16 19 C 0.00 0.12 4.96 -17.43 -0.09 0.03 16 20 N -0.90 -24.89 11.14 55.49 0.62 -24.27 16 21 Si 0.90 20.55 29.58 -169.99 -5.03 15.52 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.16 3.09 3.19 -67.60 -0.22 2.88 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 C -0.13 -2.40 7.74 37.16 0.29 -2.11 16 28 C -0.10 -1.26 9.70 -39.59 -0.38 -1.64 16 29 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.10 1.08 8.09 -51.93 -0.42 0.66 16 38 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 39 H 0.41 6.67 7.78 -40.82 -0.32 6.35 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 43 H 0.05 1.00 7.53 -51.93 -0.39 0.61 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 46 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 47 H 0.06 1.22 7.62 -51.93 -0.40 0.83 16 48 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.05 0.93 6.41 -51.93 -0.33 0.60 16 50 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 51 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 400.69 15.07 6.04 6.04 Total: -1.00 -29.33 400.69 -10.90 -40.23 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -8.78 Total: 7.19 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -3.22 Total: -9.04 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.00 Total: -49.51 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.33 -10.90 -40.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993906875.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.282 kcal (2) G-P(sol) polarization free energy of solvation -29.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds