Wall clock time and date at job start Tue Mar 31 2020 16:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47066 * 2 1 4 4 C 1.38233 * 120.00341 * 89.99625 * 3 2 1 5 5 C 1.38231 * 120.00038 * 179.97438 * 4 3 2 6 6 C 1.38243 * 119.99956 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99754 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.47231 * 89.99933 * 7 6 5 9 9 O 1.21281 * 119.99805 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99993 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99655 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.52892 * 34.91285 * 11 10 8 13 13 C 1.53046 * 109.49565 * 274.83210 * 11 10 8 14 14 C 1.53038 * 109.53742 * 301.42059 * 13 11 10 15 15 C 1.53194 * 109.31271 * 298.62896 * 14 13 11 16 16 N 1.46923 * 108.77245 * 54.63845 * 15 14 13 17 17 C 1.36942 * 120.62979 * 126.41509 * 16 15 14 18 18 H 1.07997 * 119.99974 * 209.00641 * 17 16 15 19 19 C 1.38808 * 119.99883 * 28.99952 * 17 16 15 20 20 N 1.31615 * 119.99919 * 15.03322 * 19 17 16 21 21 Si 1.86803 * 119.99890 * 195.02522 * 19 17 16 22 22 H 1.48497 * 109.46802 * 90.00462 * 21 19 17 23 23 H 1.48504 * 109.47224 * 210.00444 * 21 19 17 24 24 H 1.48498 * 109.47058 * 330.00637 * 21 19 17 25 25 C 1.46926 * 118.73975 * 306.39081 * 16 15 14 26 26 H 1.08998 * 109.58776 * 293.81905 * 25 16 15 27 27 C 1.53002 * 109.58597 * 173.53770 * 25 16 15 28 28 C 1.38230 * 119.99792 * 0.27268 * 6 5 4 29 29 C 1.38234 * 120.00451 * 359.53854 * 28 6 5 30 30 H 1.09004 * 109.47292 * 60.00399 * 1 2 3 31 31 H 1.09001 * 109.47073 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47873 * 300.00126 * 1 2 3 33 33 H 1.09002 * 109.47632 * 239.99387 * 2 1 3 34 34 H 1.09004 * 109.47292 * 119.99601 * 2 1 3 35 35 H 1.07998 * 119.99840 * 0.02562 * 4 3 2 36 36 H 1.08002 * 120.00319 * 180.02562 * 5 4 3 37 37 H 1.08996 * 109.47340 * 330.00215 * 7 6 5 38 38 H 1.08999 * 109.47152 * 209.99864 * 7 6 5 39 39 H 0.97001 * 120.00098 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.45821 * 61.43467 * 13 11 10 41 41 H 1.08994 * 109.46210 * 181.39805 * 13 11 10 42 42 H 1.09007 * 109.49534 * 178.68284 * 14 13 11 43 43 H 1.09006 * 109.50128 * 58.58548 * 14 13 11 44 44 H 1.08991 * 109.58654 * 294.85298 * 15 14 13 45 45 H 1.09002 * 109.58743 * 174.42524 * 15 14 13 46 46 H 0.97007 * 119.99487 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.46829 * 60.00372 * 27 25 16 48 48 H 1.09005 * 109.46983 * 179.97438 * 27 25 16 49 49 H 1.08993 * 109.47318 * 299.99873 * 27 25 16 50 50 H 1.08001 * 119.99899 * 179.72871 * 28 6 5 51 51 H 1.07994 * 120.00682 * 180.22717 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2626 2.0726 1.1971 5 6 2.7238 3.3757 1.1970 6 6 2.9553 4.0269 -0.0002 7 6 3.4587 5.4473 -0.0003 8 6 4.9658 5.4462 0.0005 9 8 5.5714 4.3954 0.0005 10 7 5.6405 6.6129 0.0001 11 6 7.1055 6.6117 0.0002 12 1 7.4693 5.7688 -0.5873 13 6 7.6161 6.4903 1.4379 14 6 7.0789 7.6557 2.2718 15 6 7.5911 8.9757 1.6868 16 7 7.2289 9.0344 0.2641 17 6 6.5421 10.1079 -0.2373 18 1 5.8875 9.9811 -1.0869 19 6 6.6873 11.3588 0.3465 20 7 7.6852 11.5871 1.1737 21 14 5.4665 12.7182 -0.0421 22 1 4.3452 12.6692 0.9303 23 1 6.1458 14.0354 0.0517 24 1 4.9379 12.5307 -1.4170 25 6 7.6179 7.9198 -0.6105 26 1 8.7041 7.8831 -0.6945 27 6 7.0027 8.1173 -1.9974 28 6 2.7201 3.3769 -1.1973 29 6 2.2625 2.0724 -1.1973 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3635 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0829 1.5634 2.1324 36 1 2.9042 3.8848 2.1323 37 1 3.0954 5.9616 0.8894 38 1 3.0962 5.9612 -0.8905 39 1 5.1562 7.4533 -0.0011 40 1 7.2732 5.5487 1.8667 41 1 8.7057 6.5145 1.4396 42 1 7.4238 7.5559 3.3011 43 1 5.9891 7.6467 2.2503 44 1 8.6749 9.0251 1.7902 45 1 7.1330 9.8118 2.2153 46 1 7.7869 12.4615 1.5814 47 1 7.3610 9.0543 -2.4237 48 1 7.2929 7.2897 -2.6448 49 1 5.9166 8.1486 -1.9120 50 1 2.8967 3.8871 -2.1326 51 1 2.0823 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993906875.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:19 Heat of formation + Delta-G solvation = -24.190440 kcal Electronic energy + Delta-G solvation = -28778.393654 eV Core-core repulsion = 25062.606001 eV Total energy + Delta-G solvation = -3715.787653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.25708 -40.24393 -38.98908 -35.66467 -35.37261 -34.00795 -33.40100 -32.23463 -31.77415 -30.94978 -28.34248 -27.55598 -26.79789 -24.39219 -23.60896 -23.57940 -22.38596 -21.92489 -21.11142 -20.24614 -18.25465 -18.11035 -17.26113 -16.94989 -16.79394 -16.41482 -16.00346 -15.87521 -15.66822 -15.18852 -15.02762 -14.77975 -14.55394 -14.49146 -14.44030 -14.22978 -14.12374 -13.69435 -13.55417 -13.04090 -12.94930 -12.88351 -12.78031 -12.67114 -12.50641 -12.44414 -12.30314 -12.15452 -12.03576 -11.89455 -11.67540 -11.66057 -11.62543 -11.34533 -11.02564 -10.79654 -10.47806 -9.84828 -9.75866 -9.37269 -8.59903 -7.79422 -5.26155 0.44056 0.56517 1.51460 1.53500 1.60474 1.79259 2.39091 2.55666 2.95942 3.36711 3.60665 3.75091 3.91780 3.95487 4.00095 4.09022 4.17880 4.20775 4.22489 4.24695 4.40930 4.50135 4.53315 4.58794 4.61939 4.65196 4.68064 4.76663 4.80070 4.80570 4.96301 5.00673 5.05625 5.07761 5.10308 5.14425 5.21212 5.24866 5.26277 5.36064 5.40527 5.47813 5.55237 5.57717 5.70739 5.73416 5.76619 5.76736 5.82741 6.17448 6.46156 6.77289 7.21297 7.41571 7.91445 8.44810 9.27064 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019330 B = 0.002637 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.154427 B =10614.406345 C =11055.689957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.128 4.128 5 C -0.119 4.119 6 C -0.079 4.079 7 C -0.099 4.099 8 C 0.513 3.487 9 O -0.581 6.581 10 N -0.699 5.699 11 C 0.146 3.854 12 H 0.074 0.926 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.178 3.822 16 N -0.595 5.595 17 C -0.243 4.243 18 H 0.083 0.917 19 C -0.053 4.053 20 N -0.938 5.938 21 Si 0.960 3.040 22 H -0.287 1.287 23 H -0.306 1.306 24 H -0.266 1.266 25 C 0.156 3.844 26 H 0.026 0.974 27 C -0.127 4.127 28 C -0.117 4.117 29 C -0.127 4.127 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.409 0.591 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.056 0.944 44 H -0.008 1.008 45 H 0.057 0.943 46 H 0.245 0.755 47 H 0.046 0.954 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.127 0.873 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.146 -18.586 -2.563 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.146 4.146 5 C -0.137 4.137 6 C -0.079 4.079 7 C -0.138 4.138 8 C 0.301 3.699 9 O -0.462 6.462 10 N -0.350 5.350 11 C 0.039 3.961 12 H 0.092 0.908 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.053 3.947 16 N -0.319 5.319 17 C -0.374 4.374 18 H 0.100 0.900 19 C -0.248 4.248 20 N -0.584 5.584 21 Si 0.790 3.210 22 H -0.214 1.214 23 H -0.234 1.234 24 H -0.191 1.191 25 C 0.050 3.950 26 H 0.044 0.956 27 C -0.184 4.184 28 C -0.135 4.135 29 C -0.145 4.145 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.152 0.848 36 H 0.141 0.859 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.246 0.754 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.010 0.990 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.145 0.855 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.673 -19.160 -2.520 23.110 hybrid contribution -0.007 1.720 0.207 1.732 sum -12.679 -17.440 -2.313 21.686 Atomic orbital electron populations 1.21721 0.93964 1.02394 1.01929 1.20576 0.96725 0.91364 1.03405 1.20185 0.98861 0.97232 0.92999 1.21201 1.00290 0.94666 0.98433 1.21178 0.99251 0.95559 0.97692 1.19437 0.99327 0.95261 0.93893 1.20706 0.90527 0.95616 1.06973 1.20943 0.90620 0.83168 0.75199 1.90663 1.71304 1.32454 1.51752 1.45965 1.06903 1.08726 1.73421 1.21226 0.80536 0.98139 0.96203 0.90752 1.21704 1.00142 0.97725 0.95747 1.21941 1.00397 0.95813 0.98198 1.20593 0.94931 0.94603 0.84622 1.44343 1.65221 1.18707 1.03640 1.19512 1.17449 0.86296 1.14097 0.89986 1.25795 0.98636 0.99298 1.01030 1.70183 1.30840 1.22021 1.35374 0.85363 0.78688 0.78599 0.78349 1.21418 1.23356 1.19060 1.20840 0.95929 0.87062 0.91212 0.95608 1.21691 1.01053 1.00793 0.94868 1.21190 0.99123 0.95493 0.97681 1.21219 1.00216 0.94673 0.98400 0.92818 0.91099 0.92922 0.90437 0.90561 0.84832 0.85883 0.86570 0.86087 0.75428 0.92872 0.91949 0.92242 0.92574 0.99031 0.92417 0.94547 0.93481 0.91965 0.92114 0.85471 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.89 71.98 0.71 -1.00 16 2 C -0.08 -1.19 6.06 29.85 0.18 -1.01 16 3 C -0.09 -1.84 5.13 -19.86 -0.10 -1.95 16 4 C -0.13 -2.72 9.70 22.27 0.22 -2.50 16 5 C -0.12 -2.81 9.70 22.27 0.22 -2.60 16 6 C -0.08 -1.91 4.37 -19.87 -0.09 -2.00 16 7 C -0.10 -2.21 5.83 29.10 0.17 -2.04 16 8 C 0.51 15.30 7.79 87.66 0.68 15.98 16 9 O -0.58 -21.55 15.70 -3.03 -0.05 -21.59 16 10 N -0.70 -21.35 3.46 -442.15 -1.53 -22.89 16 11 C 0.15 4.95 2.33 45.07 0.10 5.06 16 12 H 0.07 2.58 7.58 -2.39 -0.02 2.56 16 13 C -0.11 -3.94 5.58 30.62 0.17 -3.77 16 14 C -0.12 -4.57 5.93 30.67 0.18 -4.39 16 15 C 0.18 8.16 5.29 86.36 0.46 8.62 16 16 N -0.60 -26.79 2.65 -675.24 -1.79 -28.58 16 17 C -0.24 -11.85 8.60 84.03 0.72 -11.13 16 18 H 0.08 3.76 6.21 -2.91 -0.02 3.74 16 19 C -0.05 -2.74 4.96 84.86 0.42 -2.32 16 20 N -0.94 -53.23 11.14 21.65 0.24 -52.98 16 21 Si 0.96 42.40 29.58 68.60 2.03 44.43 16 22 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.31 -14.12 7.11 99.48 0.71 -13.42 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 25 C 0.16 5.95 3.19 44.98 0.14 6.09 16 26 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 27 C -0.13 -4.28 7.74 71.98 0.56 -3.72 16 28 C -0.12 -2.68 9.70 22.27 0.22 -2.47 16 29 C -0.13 -2.64 9.70 22.27 0.22 -2.42 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 34 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 35 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.12 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.12 2.23 8.09 -2.39 -0.02 2.21 16 38 H 0.12 2.19 8.08 -2.39 -0.02 2.17 16 39 H 0.41 12.51 7.78 -92.71 -0.72 11.79 16 40 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.06 2.02 8.14 -2.38 -0.02 2.01 16 43 H 0.06 2.03 7.53 -2.38 -0.02 2.02 16 44 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H 0.06 3.01 6.06 -2.39 -0.01 2.99 16 46 H 0.25 13.74 8.31 -92.70 -0.77 12.97 16 47 H 0.05 1.74 7.62 -2.39 -0.02 1.72 16 48 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 49 H 0.06 1.96 6.41 -2.39 -0.02 1.94 16 50 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 51 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -63.08 400.69 4.26 -58.82 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.18 Total: 30.34 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.18 Total: -7.55 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -3.08 Total: -104.45 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.59 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -63.08 4.26 -58.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993906875.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.628 kcal (2) G-P(sol) polarization free energy of solvation -63.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds