Wall clock time and date at job start Tue Mar 31 2020 16:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.46704 * 2 1 4 4 C 1.38245 * 119.99756 * 90.00448 * 3 2 1 5 5 C 1.38236 * 119.99665 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.00512 * 359.95564 * 5 4 3 7 7 C 1.50694 * 120.00207 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47181 * 89.99839 * 7 6 5 9 9 O 1.21281 * 120.00370 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99987 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99879 * 180.02562 * 10 8 7 12 12 H 1.08991 * 109.52759 * 34.92175 * 11 10 8 13 13 C 1.53077 * 109.62152 * 274.89181 * 11 10 8 14 14 C 1.53043 * 109.65429 * 178.82925 * 13 11 10 15 15 C 1.53191 * 109.30996 * 61.30798 * 14 13 11 16 16 N 1.46927 * 108.77626 * 305.35865 * 15 14 13 17 17 C 1.36932 * 120.63275 * 233.59483 * 16 15 14 18 18 H 1.07992 * 120.00784 * 150.17953 * 17 16 15 19 19 C 1.38824 * 119.99630 * 330.17204 * 17 16 15 20 20 N 1.31614 * 120.00040 * 344.49578 * 19 17 16 21 21 Si 1.86801 * 119.99688 * 164.49847 * 19 17 16 22 22 H 1.48493 * 109.47154 * 60.00015 * 21 19 17 23 23 H 1.48504 * 109.46999 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46930 * 300.00077 * 21 19 17 25 25 C 1.46924 * 118.73587 * 53.61109 * 16 15 14 26 26 H 1.08995 * 109.59005 * 66.32187 * 25 16 15 27 27 C 1.53002 * 109.58653 * 186.60776 * 25 16 15 28 28 C 1.38238 * 119.99370 * 0.27453 * 6 5 4 29 29 C 1.38228 * 120.00341 * 359.51483 * 28 6 5 30 30 H 1.09004 * 109.46688 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46948 * 299.99273 * 1 2 3 32 32 H 1.08993 * 109.47433 * 60.00001 * 1 2 3 33 33 H 1.09004 * 109.46948 * 240.00727 * 2 1 3 34 34 H 1.08993 * 109.47433 * 119.99999 * 2 1 3 35 35 H 1.07996 * 120.00017 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99419 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47264 * 329.99941 * 7 6 5 38 38 H 1.08997 * 109.47188 * 210.00171 * 7 6 5 39 39 H 0.97001 * 120.00024 * 0.02562 * 10 8 7 40 40 H 1.09004 * 109.45045 * 58.74569 * 13 11 10 41 41 H 1.08993 * 109.34927 * 298.86076 * 13 11 10 42 42 H 1.08990 * 109.50234 * 301.35000 * 14 13 11 43 43 H 1.09006 * 109.49054 * 181.25356 * 14 13 11 44 44 H 1.09003 * 109.58174 * 185.57130 * 15 14 13 45 45 H 1.09000 * 109.70588 * 65.21809 * 15 14 13 46 46 H 0.97001 * 120.00145 * 179.97438 * 20 19 17 47 47 H 1.08993 * 109.47176 * 59.71509 * 27 25 16 48 48 H 1.09002 * 109.46747 * 299.71504 * 27 25 16 49 49 H 1.08995 * 109.47334 * 179.71924 * 27 25 16 50 50 H 1.08003 * 119.99522 * 179.72396 * 28 6 5 51 51 H 1.08007 * 120.00069 * 180.25330 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1973 5 6 2.7239 3.3756 1.1972 6 6 2.9555 4.0269 0.0001 7 6 3.4589 5.4473 0.0002 8 6 4.9658 5.4463 0.0012 9 8 5.5715 4.3956 0.0014 10 7 5.6405 6.6130 0.0009 11 6 7.1055 6.6120 0.0014 12 1 7.4694 5.7692 -0.5862 13 6 7.6190 6.4893 1.4382 14 6 9.1492 6.4588 1.4372 15 6 9.6815 7.7669 0.8438 16 7 9.0811 7.9633 -0.4827 17 6 9.8700 8.1827 -1.5802 18 1 9.5393 7.8602 -2.5563 19 6 11.0951 8.8200 -1.4380 20 7 11.3695 9.4795 -0.3326 21 14 12.3542 8.7414 -2.8157 22 1 11.7789 9.3404 -4.0467 23 1 13.5699 9.4962 -2.4189 24 1 12.7148 7.3246 -3.0765 25 6 7.6179 7.9202 -0.6092 26 1 7.1803 8.7666 -0.0799 27 6 7.2288 7.9831 -2.0876 28 6 2.7206 3.3768 -1.1970 29 6 2.2635 2.0723 -1.1971 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.0824 1.5634 2.1325 36 1 2.9035 3.8848 2.1326 37 1 3.0953 5.9616 0.8898 38 1 3.0965 5.9612 -0.8901 39 1 5.1561 7.4534 0.0004 40 1 7.2378 5.5699 1.8827 41 1 7.2732 7.3439 2.0196 42 1 9.4959 5.6187 0.8356 43 1 9.5114 6.3490 2.4594 44 1 10.7660 7.7106 0.7493 45 1 9.4141 8.6006 1.4930 46 1 12.2256 9.9245 -0.2331 47 1 7.6673 7.1361 -2.6150 48 1 7.5986 8.9122 -2.5214 49 1 6.1434 7.9460 -2.1795 50 1 2.8973 3.8872 -2.1323 51 1 2.0839 1.5631 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993906877.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:23 Heat of formation + Delta-G solvation = -12.111191 kcal Electronic energy + Delta-G solvation = -28264.691844 eV Core-core repulsion = 24549.427986 eV Total energy + Delta-G solvation = -3715.263858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.12070 -39.16546 -37.57670 -34.80301 -34.21351 -32.59365 -31.79582 -31.28950 -30.99753 -29.26193 -27.35397 -26.03450 -24.97667 -23.57029 -22.82826 -22.09856 -20.79527 -20.67057 -20.04335 -19.29114 -16.90383 -16.55681 -16.21361 -15.95806 -15.66043 -15.19242 -14.84130 -14.67195 -13.98558 -13.91513 -13.89289 -13.75614 -13.58995 -13.42262 -13.31711 -12.97891 -12.83560 -12.56651 -12.22214 -12.07848 -11.85216 -11.66965 -11.53426 -11.40375 -11.09657 -10.99844 -10.95225 -10.90918 -10.74973 -10.56771 -10.28357 -10.12244 -10.04442 -9.86503 -9.57503 -9.34970 -8.96120 -8.63214 -8.58194 -8.44202 -6.66404 -5.79593 -3.24170 1.23281 1.36554 2.87435 3.35593 3.38563 3.44009 3.46327 3.80280 4.49166 4.50354 4.62362 4.68228 4.86335 4.91983 5.05946 5.09656 5.18115 5.28224 5.30600 5.33237 5.41375 5.42524 5.49929 5.53633 5.61656 5.63464 5.70953 5.80935 5.86522 5.97762 5.99001 6.00436 6.10288 6.22500 6.32763 6.35080 6.41283 6.51762 6.53044 6.54430 6.64977 6.74482 6.76293 6.86971 6.93872 6.99810 7.08779 7.40107 7.66506 7.80109 7.81846 8.43605 8.51575 9.20142 9.82859 10.39708 11.29069 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024604 B = 0.002256 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.731138 B =12409.123685 C =12691.104931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.064 4.064 7 C -0.105 4.105 8 C 0.511 3.489 9 O -0.534 6.534 10 N -0.721 5.721 11 C 0.131 3.869 12 H 0.084 0.916 13 C -0.116 4.116 14 C -0.140 4.140 15 C 0.170 3.830 16 N -0.582 5.582 17 C -0.253 4.253 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.168 3.832 26 H 0.027 0.973 27 C -0.136 4.136 28 C -0.102 4.102 29 C -0.117 4.117 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.395 0.605 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.087 0.913 45 H 0.019 0.981 46 H 0.254 0.746 47 H 0.053 0.947 48 H 0.063 0.937 49 H 0.038 0.962 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.429 -11.288 2.495 24.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.065 4.065 7 C -0.145 4.145 8 C 0.296 3.704 9 O -0.410 6.410 10 N -0.371 5.371 11 C 0.026 3.974 12 H 0.102 0.898 13 C -0.155 4.155 14 C -0.180 4.180 15 C 0.044 3.956 16 N -0.305 5.305 17 C -0.382 4.382 18 H 0.087 0.913 19 C -0.194 4.194 20 N -0.546 5.546 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.060 3.940 26 H 0.044 0.956 27 C -0.193 4.193 28 C -0.120 4.120 29 C -0.135 4.135 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.229 0.771 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.105 0.895 45 H 0.037 0.963 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.057 0.943 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.802 -11.932 2.516 24.113 hybrid contribution 0.567 0.506 -0.564 0.946 sum -20.235 -11.426 1.952 23.320 Atomic orbital electron populations 1.21745 0.94837 1.01543 1.02167 1.20535 0.96039 0.92865 1.02804 1.19855 0.99457 0.96067 0.93278 1.20935 1.00438 0.94775 0.97407 1.20948 0.98817 0.94904 0.97373 1.19269 0.98833 0.94844 0.93537 1.20707 0.93262 0.95461 1.05035 1.20423 0.89268 0.84139 0.76562 1.90725 1.70185 1.31191 1.48919 1.46154 1.08161 1.07958 1.74860 1.21750 0.77128 1.01549 0.97000 0.89761 1.21754 0.97105 1.00355 0.96251 1.22177 0.94137 1.01846 0.99831 1.20821 0.99281 0.90664 0.84792 1.44013 0.98251 1.82851 1.05375 1.19108 0.99312 1.31451 0.88339 0.91315 1.25092 1.00019 0.97035 0.97298 1.70014 1.23087 1.34583 1.26909 0.86380 0.81054 0.77683 0.81696 1.20876 1.21668 1.20985 1.20559 0.87026 0.92127 0.94312 0.95571 1.21811 0.98147 1.02700 0.96682 1.20961 0.98742 0.94891 0.97411 1.20939 1.00400 0.94755 0.97424 0.92535 0.92597 0.92592 0.91117 0.91132 0.86335 0.86321 0.88202 0.88135 0.77117 0.93293 0.92865 0.92555 0.93049 0.89524 0.96268 0.93602 0.92745 0.91789 0.94328 0.86250 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.09 -0.67 6.06 -27.88 -0.17 -0.83 16 3 C -0.09 -0.89 5.13 -104.62 -0.54 -1.42 16 4 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 5 C -0.10 -1.16 9.70 -39.58 -0.38 -1.55 16 6 C -0.06 -0.75 4.37 -104.63 -0.46 -1.21 16 7 C -0.10 -1.07 5.83 -29.04 -0.17 -1.24 16 8 C 0.51 7.41 7.79 -10.99 -0.09 7.32 16 9 O -0.53 -10.18 15.70 5.56 0.09 -10.09 16 10 N -0.72 -10.16 4.58 -53.67 -0.25 -10.40 16 11 C 0.13 2.37 2.00 -67.79 -0.14 2.24 16 12 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 13 C -0.12 -2.10 5.46 -26.67 -0.15 -2.25 16 14 C -0.14 -2.80 6.08 -26.61 -0.16 -2.96 16 15 C 0.17 4.03 5.28 -3.71 -0.02 4.01 16 16 N -0.58 -14.15 2.99 -164.78 -0.49 -14.64 16 17 C -0.25 -6.71 8.57 -15.06 -0.13 -6.84 16 18 H 0.07 1.79 6.24 -52.49 -0.33 1.47 16 19 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 20 N -0.90 -25.75 11.23 55.49 0.62 -25.13 16 21 Si 0.90 21.56 29.58 -169.99 -5.03 16.53 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.17 3.34 3.03 -67.60 -0.20 3.14 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 C -0.14 -2.50 7.84 37.16 0.29 -2.21 16 28 C -0.10 -1.17 9.70 -39.59 -0.38 -1.55 16 29 C -0.12 -1.25 9.70 -39.59 -0.38 -1.63 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 38 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.40 4.42 8.61 -40.82 -0.35 4.06 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.09 2.30 6.15 -51.93 -0.32 1.98 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.05 1.06 7.42 -51.93 -0.39 0.68 16 48 H 0.06 1.26 7.64 -51.93 -0.40 0.86 16 49 H 0.04 0.57 7.79 -51.93 -0.40 0.17 16 50 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 51 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 404.08 15.07 6.09 6.09 Total: -1.00 -31.81 404.08 -11.03 -42.84 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.89 Total: 3.98 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -3.18 Total: -9.17 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.12 Total: -50.17 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.81 -11.03 -42.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993906877.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.733 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds