Wall clock time and date at job start Tue Mar 31 2020 16:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.46704 * 2 1 4 4 C 1.38245 * 119.99756 * 90.00448 * 3 2 1 5 5 C 1.38236 * 119.99665 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.00512 * 359.95564 * 5 4 3 7 7 C 1.50694 * 120.00207 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47181 * 89.99839 * 7 6 5 9 9 O 1.21281 * 120.00370 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99987 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99879 * 180.02562 * 10 8 7 12 12 H 1.08991 * 109.52759 * 34.92175 * 11 10 8 13 13 C 1.53077 * 109.62152 * 274.89181 * 11 10 8 14 14 C 1.53043 * 109.65429 * 178.82925 * 13 11 10 15 15 C 1.53191 * 109.30996 * 61.30798 * 14 13 11 16 16 N 1.46927 * 108.77626 * 305.35865 * 15 14 13 17 17 C 1.36932 * 120.63275 * 233.59483 * 16 15 14 18 18 H 1.07992 * 120.00784 * 150.17953 * 17 16 15 19 19 C 1.38824 * 119.99630 * 330.17204 * 17 16 15 20 20 N 1.31614 * 120.00040 * 344.49578 * 19 17 16 21 21 Si 1.86801 * 119.99688 * 164.49847 * 19 17 16 22 22 H 1.48493 * 109.47154 * 60.00015 * 21 19 17 23 23 H 1.48504 * 109.46999 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46930 * 300.00077 * 21 19 17 25 25 C 1.46924 * 118.73587 * 53.61109 * 16 15 14 26 26 H 1.08995 * 109.59005 * 66.32187 * 25 16 15 27 27 C 1.53002 * 109.58653 * 186.60776 * 25 16 15 28 28 C 1.38238 * 119.99370 * 0.27453 * 6 5 4 29 29 C 1.38228 * 120.00341 * 359.51483 * 28 6 5 30 30 H 1.09004 * 109.46688 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46948 * 299.99273 * 1 2 3 32 32 H 1.08993 * 109.47433 * 60.00001 * 1 2 3 33 33 H 1.09004 * 109.46948 * 240.00727 * 2 1 3 34 34 H 1.08993 * 109.47433 * 119.99999 * 2 1 3 35 35 H 1.07996 * 120.00017 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99419 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47264 * 329.99941 * 7 6 5 38 38 H 1.08997 * 109.47188 * 210.00171 * 7 6 5 39 39 H 0.97001 * 120.00024 * 0.02562 * 10 8 7 40 40 H 1.09004 * 109.45045 * 58.74569 * 13 11 10 41 41 H 1.08993 * 109.34927 * 298.86076 * 13 11 10 42 42 H 1.08990 * 109.50234 * 301.35000 * 14 13 11 43 43 H 1.09006 * 109.49054 * 181.25356 * 14 13 11 44 44 H 1.09003 * 109.58174 * 185.57130 * 15 14 13 45 45 H 1.09000 * 109.70588 * 65.21809 * 15 14 13 46 46 H 0.97001 * 120.00145 * 179.97438 * 20 19 17 47 47 H 1.08993 * 109.47176 * 59.71509 * 27 25 16 48 48 H 1.09002 * 109.46747 * 299.71504 * 27 25 16 49 49 H 1.08995 * 109.47334 * 179.71924 * 27 25 16 50 50 H 1.08003 * 119.99522 * 179.72396 * 28 6 5 51 51 H 1.08007 * 120.00069 * 180.25330 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1973 5 6 2.7239 3.3756 1.1972 6 6 2.9555 4.0269 0.0001 7 6 3.4589 5.4473 0.0002 8 6 4.9658 5.4463 0.0012 9 8 5.5715 4.3956 0.0014 10 7 5.6405 6.6130 0.0009 11 6 7.1055 6.6120 0.0014 12 1 7.4694 5.7692 -0.5862 13 6 7.6190 6.4893 1.4382 14 6 9.1492 6.4588 1.4372 15 6 9.6815 7.7669 0.8438 16 7 9.0811 7.9633 -0.4827 17 6 9.8700 8.1827 -1.5802 18 1 9.5393 7.8602 -2.5563 19 6 11.0951 8.8200 -1.4380 20 7 11.3695 9.4795 -0.3326 21 14 12.3542 8.7414 -2.8157 22 1 11.7789 9.3404 -4.0467 23 1 13.5699 9.4962 -2.4189 24 1 12.7148 7.3246 -3.0765 25 6 7.6179 7.9202 -0.6092 26 1 7.1803 8.7666 -0.0799 27 6 7.2288 7.9831 -2.0876 28 6 2.7206 3.3768 -1.1970 29 6 2.2635 2.0723 -1.1971 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.0824 1.5634 2.1325 36 1 2.9035 3.8848 2.1326 37 1 3.0953 5.9616 0.8898 38 1 3.0965 5.9612 -0.8901 39 1 5.1561 7.4534 0.0004 40 1 7.2378 5.5699 1.8827 41 1 7.2732 7.3439 2.0196 42 1 9.4959 5.6187 0.8356 43 1 9.5114 6.3490 2.4594 44 1 10.7660 7.7106 0.7493 45 1 9.4141 8.6006 1.4930 46 1 12.2256 9.9245 -0.2331 47 1 7.6673 7.1361 -2.6150 48 1 7.5986 8.9122 -2.5214 49 1 6.1434 7.9460 -2.1795 50 1 2.8973 3.8872 -2.1323 51 1 2.0839 1.5631 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993906877.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:22 Heat of formation + Delta-G solvation = -28.947561 kcal Electronic energy + Delta-G solvation = -28265.421924 eV Core-core repulsion = 24549.427986 eV Total energy + Delta-G solvation = -3715.993937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.21483 -40.19664 -39.07607 -35.89572 -35.43724 -34.25754 -33.41563 -32.27607 -31.77521 -30.83400 -28.38929 -27.52835 -26.79714 -24.47147 -23.61289 -23.52800 -22.33200 -21.70866 -21.25327 -20.83831 -18.35861 -17.93647 -17.47696 -16.99088 -16.78434 -16.52792 -15.93766 -15.83606 -15.58265 -15.52250 -15.05782 -14.73150 -14.63176 -14.56586 -14.45851 -14.27438 -14.14134 -13.70581 -13.36122 -13.27820 -12.92582 -12.88522 -12.77859 -12.69596 -12.52584 -12.51284 -12.37084 -12.04156 -12.02639 -11.81512 -11.76715 -11.69024 -11.63416 -11.59985 -11.17921 -10.80995 -10.52212 -9.94470 -9.76135 -9.38044 -8.63973 -7.85632 -5.31748 0.43092 0.56302 1.46211 1.49247 1.54885 1.75772 2.23980 2.54295 2.93570 3.29755 3.64171 3.73263 3.89641 3.91683 3.97252 4.03091 4.16994 4.18588 4.23446 4.23904 4.37112 4.50992 4.52183 4.54210 4.61579 4.63312 4.65317 4.75950 4.78820 4.80416 4.89027 4.93902 5.03992 5.07071 5.09500 5.13337 5.19387 5.25669 5.25841 5.31151 5.39476 5.46719 5.51336 5.54985 5.62963 5.70455 5.71956 5.76431 5.76853 6.17259 6.42126 6.69989 7.16531 7.39920 7.87134 8.38919 9.21098 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024604 B = 0.002256 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.731138 B =12409.123685 C =12691.104931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.117 4.117 6 C -0.083 4.083 7 C -0.093 4.093 8 C 0.512 3.488 9 O -0.583 6.583 10 N -0.709 5.709 11 C 0.148 3.852 12 H 0.052 0.948 13 C -0.108 4.108 14 C -0.130 4.130 15 C 0.176 3.824 16 N -0.600 5.600 17 C -0.254 4.254 18 H 0.070 0.930 19 C -0.049 4.049 20 N -0.932 5.932 21 Si 0.961 3.039 22 H -0.274 1.274 23 H -0.295 1.295 24 H -0.283 1.283 25 C 0.164 3.836 26 H 0.035 0.965 27 C -0.127 4.127 28 C -0.118 4.118 29 C -0.130 4.130 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.414 0.586 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.006 0.994 46 H 0.249 0.751 47 H 0.037 0.963 48 H 0.047 0.953 49 H 0.078 0.922 50 H 0.127 0.873 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.857 -11.731 2.375 26.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.148 4.148 5 C -0.135 4.135 6 C -0.084 4.084 7 C -0.133 4.133 8 C 0.299 3.701 9 O -0.462 6.462 10 N -0.361 5.361 11 C 0.041 3.959 12 H 0.070 0.930 13 C -0.147 4.147 14 C -0.170 4.170 15 C 0.051 3.949 16 N -0.324 5.324 17 C -0.384 4.384 18 H 0.088 0.912 19 C -0.244 4.244 20 N -0.578 5.578 21 Si 0.789 3.211 22 H -0.199 1.199 23 H -0.221 1.221 24 H -0.210 1.210 25 C 0.057 3.943 26 H 0.052 0.948 27 C -0.184 4.184 28 C -0.136 4.136 29 C -0.148 4.148 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.251 0.749 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.024 0.976 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.067 0.933 49 H 0.096 0.904 50 H 0.145 0.855 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.287 -12.359 2.387 26.471 hybrid contribution 1.257 0.583 -0.516 1.478 sum -22.030 -11.776 1.871 25.050 Atomic orbital electron populations 1.21714 0.93820 1.02389 1.01987 1.20583 0.96863 0.91496 1.03282 1.20182 0.98883 0.97158 0.93109 1.21223 1.00348 0.94882 0.98303 1.21213 0.98983 0.95430 0.97858 1.19501 0.99390 0.95765 0.93707 1.20724 0.89381 0.95389 1.07768 1.21169 0.90966 0.83058 0.74865 1.90713 1.71541 1.32931 1.51014 1.45931 1.06344 1.09163 1.74653 1.21211 0.79587 0.98891 0.96166 0.93013 1.21670 0.95401 1.01058 0.96523 1.22019 0.95703 0.98935 1.00325 1.20614 0.97479 0.91973 0.84853 1.44252 1.00225 1.83039 1.04913 1.19380 0.99730 1.30198 0.89095 0.91197 1.25778 1.01806 0.97462 0.99396 1.70153 1.23131 1.35906 1.28629 0.85447 0.78732 0.77349 0.79560 1.19931 1.22107 1.20991 1.20734 0.84586 0.93212 0.95736 0.94758 1.21724 1.00557 1.01052 0.95110 1.21216 0.99045 0.95449 0.97893 1.21218 1.00412 0.94867 0.98333 0.91183 0.92737 0.92806 0.90697 0.90613 0.84842 0.85345 0.85284 0.85381 0.74911 0.92930 0.91455 0.94057 0.91026 0.92946 0.97629 0.94220 0.94374 0.93349 0.90365 0.85482 0.84958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 71.98 0.71 -0.91 16 2 C -0.08 -1.20 6.06 29.85 0.18 -1.02 16 3 C -0.09 -1.80 5.13 -19.86 -0.10 -1.90 16 4 C -0.13 -2.58 9.70 22.27 0.22 -2.36 16 5 C -0.12 -2.48 9.70 22.27 0.22 -2.26 16 6 C -0.08 -1.80 4.37 -19.87 -0.09 -1.88 16 7 C -0.09 -1.61 5.83 29.10 0.17 -1.44 16 8 C 0.51 13.70 7.79 87.65 0.68 14.39 16 9 O -0.58 -21.72 15.70 -3.03 -0.05 -21.77 16 10 N -0.71 -18.14 4.58 -442.11 -2.03 -20.17 16 11 C 0.15 5.18 2.00 45.08 0.09 5.27 16 12 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 13 C -0.11 -3.77 5.46 30.63 0.17 -3.60 16 14 C -0.13 -5.18 6.08 30.67 0.19 -5.00 16 15 C 0.18 8.53 5.28 86.36 0.46 8.99 16 16 N -0.60 -29.50 2.99 -675.23 -2.02 -31.51 16 17 C -0.25 -13.67 8.57 84.04 0.72 -12.95 16 18 H 0.07 3.68 6.24 -2.91 -0.02 3.66 16 19 C -0.05 -2.71 4.94 84.87 0.42 -2.29 16 20 N -0.93 -54.60 11.23 21.65 0.24 -54.36 16 21 Si 0.96 45.01 29.58 68.60 2.03 47.04 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 C 0.16 6.39 3.03 44.98 0.14 6.52 16 26 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 27 C -0.13 -4.50 7.84 71.98 0.56 -3.93 16 28 C -0.12 -2.55 9.70 22.27 0.22 -2.33 16 29 C -0.13 -2.64 9.70 22.27 0.22 -2.42 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.98 8.09 -2.38 -0.02 0.96 16 34 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 35 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.13 1.50 8.09 -2.39 -0.02 1.48 16 38 H 0.13 1.53 8.08 -2.39 -0.02 1.51 16 39 H 0.41 7.68 8.61 -92.71 -0.80 6.88 16 40 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 44 H 0.05 2.88 6.15 -2.39 -0.01 2.87 16 45 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 47 H 0.04 1.46 7.42 -2.39 -0.02 1.44 16 48 H 0.05 1.85 7.64 -2.39 -0.02 1.83 16 49 H 0.08 2.11 7.79 -2.39 -0.02 2.09 16 50 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 51 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -70.77 404.08 3.44 -67.33 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.10 Total: 22.55 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 5.16 Total: -9.12 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -3.80 Total: -106.04 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.77 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -70.77 3.44 -67.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993906877.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.383 kcal (2) G-P(sol) polarization free energy of solvation -70.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds