Wall clock time and date at job start Tue Mar 31 2020 16:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47114 * 2 1 4 4 C 1.38229 * 120.00127 * 90.00067 * 3 2 1 5 5 C 1.38241 * 120.00118 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99674 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99767 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46828 * 89.99966 * 7 6 5 9 9 O 1.21282 * 120.00467 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99788 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99843 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.50053 * 324.99966 * 11 10 8 13 13 C 1.53046 * 109.49720 * 85.06394 * 11 10 8 14 14 C 1.53041 * 109.53827 * 58.61858 * 13 11 10 15 15 C 1.53198 * 109.31080 * 61.36470 * 14 13 11 16 16 N 1.46928 * 108.77531 * 305.36301 * 15 14 13 17 17 C 1.36935 * 120.62906 * 233.60935 * 16 15 14 18 18 H 1.08006 * 119.99401 * 150.17078 * 17 16 15 19 19 C 1.38811 * 120.00331 * 330.16809 * 17 16 15 20 20 N 1.31618 * 119.99673 * 344.49587 * 19 17 16 21 21 Si 1.86796 * 119.99901 * 164.49218 * 19 17 16 22 22 H 1.48504 * 109.47287 * 60.00149 * 21 19 17 23 23 H 1.48503 * 109.46916 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47470 * 300.00242 * 21 19 17 25 25 C 1.46928 * 118.73710 * 53.61184 * 16 15 14 26 26 H 1.08998 * 109.58393 * 66.18062 * 25 16 15 27 27 C 1.53004 * 109.58535 * 186.60022 * 25 16 15 28 28 C 1.38236 * 120.00259 * 0.26940 * 6 5 4 29 29 C 1.38232 * 119.99849 * 359.54241 * 28 6 5 30 30 H 1.09001 * 109.47257 * 300.00059 * 1 2 3 31 31 H 1.08999 * 109.46940 * 60.00401 * 1 2 3 32 32 H 1.09001 * 109.47095 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47257 * 239.99941 * 2 1 3 34 34 H 1.08998 * 109.47362 * 119.99926 * 2 1 3 35 35 H 1.07994 * 120.00030 * 359.97438 * 4 3 2 36 36 H 1.07999 * 119.99962 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.47238 * 330.00410 * 7 6 5 38 38 H 1.09000 * 109.47252 * 209.99756 * 7 6 5 39 39 H 0.96993 * 120.00037 * 359.97438 * 10 8 7 40 40 H 1.08997 * 109.45590 * 178.63715 * 13 11 10 41 41 H 1.08992 * 109.45728 * 298.59522 * 13 11 10 42 42 H 1.08990 * 109.49774 * 181.31323 * 14 13 11 43 43 H 1.08995 * 109.49350 * 301.41536 * 14 13 11 44 44 H 1.08988 * 109.58694 * 65.15490 * 15 14 13 45 45 H 1.09001 * 109.58398 * 185.58184 * 15 14 13 46 46 H 0.97004 * 119.99759 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.47008 * 179.28534 * 27 25 16 48 48 H 1.09001 * 109.47070 * 299.29262 * 27 25 16 49 49 H 1.09005 * 109.46861 * 59.29355 * 27 25 16 50 50 H 1.07999 * 119.99853 * 179.72880 * 28 6 5 51 51 H 1.08005 * 119.99993 * 180.22570 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7240 3.3756 1.1971 6 6 2.9554 4.0269 -0.0001 7 6 3.4577 5.4477 -0.0001 8 6 4.9648 5.4476 0.0011 9 8 5.5712 4.3973 0.0024 10 7 5.6387 6.6148 0.0018 11 6 7.1037 6.6148 0.0036 12 1 7.4668 5.7731 0.5935 13 6 7.6162 6.4905 -1.4331 14 6 7.0801 7.6541 -2.2702 15 6 7.5912 8.9754 -1.6871 16 7 7.2269 9.0370 -0.2650 17 6 6.5389 10.1111 0.2330 18 1 5.8729 9.9831 1.0736 19 6 6.6973 11.3643 -0.3424 20 7 7.7121 11.5948 -1.1483 21 14 5.4704 12.7235 0.0269 22 1 5.4597 12.9977 1.4864 23 1 5.8604 13.9550 -0.7057 24 1 4.1152 12.2984 -0.4067 25 6 7.6150 7.9242 0.6125 26 1 8.7010 7.8880 0.6980 27 6 6.9949 8.1227 1.9971 28 6 2.7202 3.3769 -1.1972 29 6 2.2626 2.0725 -1.1972 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0823 1.5635 2.1324 36 1 2.9036 3.8849 2.1324 37 1 3.0937 5.9618 0.8894 38 1 3.0952 5.9613 -0.8906 39 1 5.1537 7.4548 0.0012 40 1 8.7059 6.5149 -1.4332 41 1 7.2742 5.5479 -1.8603 42 1 7.4264 7.5523 -3.2986 43 1 5.9904 7.6449 -2.2501 44 1 8.6751 9.0248 -1.7891 45 1 7.1336 9.8103 -2.2179 46 1 7.8227 12.4705 -1.5507 47 1 7.2735 7.2898 2.6426 48 1 7.3599 9.0548 2.4284 49 1 5.9094 8.1647 1.9064 50 1 2.8968 3.8872 -2.1325 51 1 2.0823 1.5635 -2.1326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993906879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:26 Heat of formation + Delta-G solvation = -11.189789 kcal Electronic energy + Delta-G solvation = -28775.239627 eV Core-core repulsion = 25060.015724 eV Total energy + Delta-G solvation = -3715.223903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.05294 -39.17026 -37.53218 -34.70953 -33.87596 -32.45117 -31.81883 -31.18715 -30.92685 -29.40776 -27.27247 -26.11293 -25.01614 -23.51252 -22.75302 -22.05784 -20.95570 -20.71021 -19.99329 -18.70465 -16.86952 -16.51673 -16.18952 -15.87542 -15.42489 -15.17363 -14.77261 -14.67055 -14.02465 -13.91644 -13.85270 -13.70160 -13.53769 -13.30557 -13.10926 -13.04637 -12.82362 -12.57817 -12.17825 -11.95329 -11.82286 -11.78580 -11.35938 -11.25941 -11.22409 -10.99548 -10.92827 -10.88639 -10.72813 -10.62205 -10.53714 -10.13762 -10.03153 -9.67503 -9.49352 -9.31511 -8.89244 -8.55061 -8.50191 -8.42476 -6.69282 -5.83944 -3.29565 1.31280 1.43431 3.02658 3.32772 3.39037 3.40020 3.53683 3.94794 4.42549 4.57842 4.68423 4.78745 4.94163 4.98830 5.13831 5.24133 5.29032 5.30253 5.31850 5.35127 5.44777 5.55717 5.56425 5.59790 5.63425 5.65509 5.75206 5.76751 5.91511 5.96279 6.05733 6.07609 6.12075 6.21923 6.33418 6.40314 6.41935 6.52847 6.57917 6.62480 6.67135 6.67962 6.77698 6.93343 6.96435 7.01113 7.13570 7.35835 7.63507 7.74810 8.06576 8.39615 8.68502 9.15428 9.78481 10.36300 11.23992 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.002635 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.411152 B =10625.429109 C =11065.457103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.059 4.059 7 C -0.106 4.106 8 C 0.510 3.490 9 O -0.548 6.548 10 N -0.702 5.702 11 C 0.135 3.865 12 H 0.074 0.926 13 C -0.120 4.120 14 C -0.139 4.139 15 C 0.172 3.828 16 N -0.585 5.585 17 C -0.257 4.257 18 H 0.069 0.931 19 C 0.006 3.994 20 N -0.899 5.899 21 Si 0.900 3.100 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.159 3.841 26 H 0.038 0.962 27 C -0.134 4.134 28 C -0.102 4.102 29 C -0.118 4.118 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.408 0.592 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.018 0.982 45 H 0.085 0.915 46 H 0.254 0.746 47 H 0.038 0.962 48 H 0.063 0.937 49 H 0.053 0.947 50 H 0.119 0.881 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 -16.908 1.623 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.060 4.060 7 C -0.146 4.146 8 C 0.296 3.704 9 O -0.426 6.426 10 N -0.353 5.353 11 C 0.029 3.971 12 H 0.092 0.908 13 C -0.159 4.159 14 C -0.179 4.179 15 C 0.046 3.954 16 N -0.309 5.309 17 C -0.386 4.386 18 H 0.087 0.913 19 C -0.193 4.193 20 N -0.543 5.543 21 Si 0.730 3.270 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.052 3.948 26 H 0.056 0.944 27 C -0.192 4.192 28 C -0.121 4.121 29 C -0.136 4.136 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.244 0.756 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.036 0.964 45 H 0.103 0.897 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.082 0.918 49 H 0.072 0.928 50 H 0.137 0.863 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.778 -17.457 1.550 20.574 hybrid contribution -0.639 1.306 0.038 1.455 sum -11.417 -16.151 1.588 19.842 Atomic orbital electron populations 1.21746 0.94875 1.01490 1.02210 1.20521 0.96020 0.92907 1.02695 1.19832 0.99704 0.96050 0.93290 1.20920 1.00518 0.94799 0.97351 1.20956 0.98840 0.94854 0.97432 1.19294 0.98400 0.94838 0.93463 1.20708 0.93527 0.95200 1.05204 1.20391 0.89262 0.84165 0.76617 1.90677 1.70207 1.31420 1.50270 1.46012 1.07675 1.08346 1.73304 1.21496 0.79421 0.99623 0.96575 0.90796 1.21761 1.00042 0.98281 0.95829 1.22133 1.00433 0.97740 0.97554 1.20784 0.96697 0.93537 0.84357 1.44143 1.65255 1.18423 1.03093 1.19087 1.17851 0.85934 1.15744 0.91300 1.25115 0.96851 0.97065 1.00296 1.70017 1.27900 1.22070 1.34313 0.86417 0.81138 0.81568 0.77857 1.20932 1.21740 1.21021 1.20726 0.96298 0.87303 0.90503 0.94426 1.21771 1.00897 1.00669 0.95870 1.20964 0.98782 0.94845 0.97466 1.20927 1.00496 0.94774 0.97363 0.92582 0.92585 0.92580 0.91192 0.91196 0.86399 0.86300 0.88184 0.88152 0.75584 0.92067 0.93212 0.93554 0.92867 0.96432 0.89690 0.93581 0.94275 0.91838 0.92781 0.86296 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.08 -0.69 6.06 -27.88 -0.17 -0.86 16 3 C -0.09 -0.96 5.13 -104.62 -0.54 -1.50 16 4 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 5 C -0.10 -1.26 9.70 -39.58 -0.38 -1.64 16 6 C -0.06 -0.77 4.37 -104.62 -0.46 -1.23 16 7 C -0.11 -1.31 5.83 -29.03 -0.17 -1.48 16 8 C 0.51 8.08 7.79 -10.98 -0.09 8.00 16 9 O -0.55 -10.53 15.70 5.56 0.09 -10.44 16 10 N -0.70 -11.39 3.47 -53.68 -0.19 -11.57 16 11 C 0.14 2.39 2.32 -67.81 -0.16 2.23 16 12 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 13 C -0.12 -2.14 5.58 -26.69 -0.15 -2.29 16 14 C -0.14 -2.61 5.93 -26.61 -0.16 -2.77 16 15 C 0.17 3.87 5.28 -3.71 -0.02 3.85 16 16 N -0.59 -13.23 2.64 -164.77 -0.44 -13.66 16 17 C -0.26 -6.32 8.58 -15.06 -0.13 -6.45 16 18 H 0.07 1.64 6.23 -52.48 -0.33 1.31 16 19 C 0.01 0.16 4.94 -17.43 -0.09 0.07 16 20 N -0.90 -24.89 11.23 55.49 0.62 -24.26 16 21 Si 0.90 20.54 29.58 -169.99 -5.03 15.51 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 C 0.16 3.10 3.20 -67.60 -0.22 2.88 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 C -0.13 -2.39 7.73 37.16 0.29 -2.11 16 28 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 29 C -0.12 -1.33 9.70 -39.58 -0.38 -1.72 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 38 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 39 H 0.41 6.68 7.77 -40.82 -0.32 6.36 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 1.00 7.53 -51.93 -0.39 0.61 16 44 H 0.02 0.42 8.14 -51.94 -0.42 0.00 16 45 H 0.08 2.15 6.15 -51.93 -0.32 1.83 16 46 H 0.25 6.89 8.31 -40.82 -0.34 6.56 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 1.22 7.67 -51.93 -0.40 0.82 16 49 H 0.05 0.94 6.37 -51.93 -0.33 0.60 16 50 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 51 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 400.85 15.07 6.04 6.04 Total: -1.00 -29.32 400.85 -10.90 -40.22 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.79 Total: 7.19 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -3.22 Total: -9.02 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.00 Total: -49.50 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.32 -10.90 -40.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993906879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.033 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds