Wall clock time and date at job start Tue Mar 31 2020 16:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47114 * 2 1 4 4 C 1.38229 * 120.00127 * 90.00067 * 3 2 1 5 5 C 1.38241 * 120.00118 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99674 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99767 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46828 * 89.99966 * 7 6 5 9 9 O 1.21282 * 120.00467 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99788 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99843 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.50053 * 324.99966 * 11 10 8 13 13 C 1.53046 * 109.49720 * 85.06394 * 11 10 8 14 14 C 1.53041 * 109.53827 * 58.61858 * 13 11 10 15 15 C 1.53198 * 109.31080 * 61.36470 * 14 13 11 16 16 N 1.46928 * 108.77531 * 305.36301 * 15 14 13 17 17 C 1.36935 * 120.62906 * 233.60935 * 16 15 14 18 18 H 1.08006 * 119.99401 * 150.17078 * 17 16 15 19 19 C 1.38811 * 120.00331 * 330.16809 * 17 16 15 20 20 N 1.31618 * 119.99673 * 344.49587 * 19 17 16 21 21 Si 1.86796 * 119.99901 * 164.49218 * 19 17 16 22 22 H 1.48504 * 109.47287 * 60.00149 * 21 19 17 23 23 H 1.48503 * 109.46916 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47470 * 300.00242 * 21 19 17 25 25 C 1.46928 * 118.73710 * 53.61184 * 16 15 14 26 26 H 1.08998 * 109.58393 * 66.18062 * 25 16 15 27 27 C 1.53004 * 109.58535 * 186.60022 * 25 16 15 28 28 C 1.38236 * 120.00259 * 0.26940 * 6 5 4 29 29 C 1.38232 * 119.99849 * 359.54241 * 28 6 5 30 30 H 1.09001 * 109.47257 * 300.00059 * 1 2 3 31 31 H 1.08999 * 109.46940 * 60.00401 * 1 2 3 32 32 H 1.09001 * 109.47095 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47257 * 239.99941 * 2 1 3 34 34 H 1.08998 * 109.47362 * 119.99926 * 2 1 3 35 35 H 1.07994 * 120.00030 * 359.97438 * 4 3 2 36 36 H 1.07999 * 119.99962 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.47238 * 330.00410 * 7 6 5 38 38 H 1.09000 * 109.47252 * 209.99756 * 7 6 5 39 39 H 0.96993 * 120.00037 * 359.97438 * 10 8 7 40 40 H 1.08997 * 109.45590 * 178.63715 * 13 11 10 41 41 H 1.08992 * 109.45728 * 298.59522 * 13 11 10 42 42 H 1.08990 * 109.49774 * 181.31323 * 14 13 11 43 43 H 1.08995 * 109.49350 * 301.41536 * 14 13 11 44 44 H 1.08988 * 109.58694 * 65.15490 * 15 14 13 45 45 H 1.09001 * 109.58398 * 185.58184 * 15 14 13 46 46 H 0.97004 * 119.99759 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.47008 * 179.28534 * 27 25 16 48 48 H 1.09001 * 109.47070 * 299.29262 * 27 25 16 49 49 H 1.09005 * 109.46861 * 59.29355 * 27 25 16 50 50 H 1.07999 * 119.99853 * 179.72880 * 28 6 5 51 51 H 1.08005 * 119.99993 * 180.22570 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7240 3.3756 1.1971 6 6 2.9554 4.0269 -0.0001 7 6 3.4577 5.4477 -0.0001 8 6 4.9648 5.4476 0.0011 9 8 5.5712 4.3973 0.0024 10 7 5.6387 6.6148 0.0018 11 6 7.1037 6.6148 0.0036 12 1 7.4668 5.7731 0.5935 13 6 7.6162 6.4905 -1.4331 14 6 7.0801 7.6541 -2.2702 15 6 7.5912 8.9754 -1.6871 16 7 7.2269 9.0370 -0.2650 17 6 6.5389 10.1111 0.2330 18 1 5.8729 9.9831 1.0736 19 6 6.6973 11.3643 -0.3424 20 7 7.7121 11.5948 -1.1483 21 14 5.4704 12.7235 0.0269 22 1 5.4597 12.9977 1.4864 23 1 5.8604 13.9550 -0.7057 24 1 4.1152 12.2984 -0.4067 25 6 7.6150 7.9242 0.6125 26 1 8.7010 7.8880 0.6980 27 6 6.9949 8.1227 1.9971 28 6 2.7202 3.3769 -1.1972 29 6 2.2626 2.0725 -1.1972 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0823 1.5635 2.1324 36 1 2.9036 3.8849 2.1324 37 1 3.0937 5.9618 0.8894 38 1 3.0952 5.9613 -0.8906 39 1 5.1537 7.4548 0.0012 40 1 8.7059 6.5149 -1.4332 41 1 7.2742 5.5479 -1.8603 42 1 7.4264 7.5523 -3.2986 43 1 5.9904 7.6449 -2.2501 44 1 8.6751 9.0248 -1.7891 45 1 7.1336 9.8103 -2.2179 46 1 7.8227 12.4705 -1.5507 47 1 7.2735 7.2898 2.6426 48 1 7.3599 9.0548 2.4284 49 1 5.9094 8.1647 1.9064 50 1 2.8968 3.8872 -2.1325 51 1 2.0823 1.5635 -2.1326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993906879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:25 Heat of formation + Delta-G solvation = -24.427810 kcal Electronic energy + Delta-G solvation = -28775.813671 eV Core-core repulsion = 25060.015724 eV Total energy + Delta-G solvation = -3715.797946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.25686 -40.24349 -38.98690 -35.66008 -35.37070 -34.01191 -33.39494 -32.23664 -31.77370 -30.95532 -28.34090 -27.55426 -26.79012 -24.39340 -23.60934 -23.58185 -22.38562 -21.92503 -21.11148 -20.24654 -18.25002 -18.11090 -17.25668 -16.94165 -16.79318 -16.41663 -16.00309 -15.87740 -15.67642 -15.19053 -15.02383 -14.78151 -14.55364 -14.49196 -14.43979 -14.22805 -14.12282 -13.69459 -13.55510 -13.04175 -12.94031 -12.86792 -12.77524 -12.66429 -12.50625 -12.43308 -12.33550 -12.15334 -12.03595 -11.93130 -11.67509 -11.65989 -11.62551 -11.34950 -11.01823 -10.79660 -10.46989 -9.84762 -9.75835 -9.37280 -8.58673 -7.79701 -5.26614 0.44088 0.56510 1.52421 1.53882 1.59378 1.79238 2.39128 2.55945 2.95949 3.36605 3.60716 3.75069 3.91799 3.95560 4.00153 4.09145 4.17889 4.20619 4.22464 4.24688 4.40872 4.50130 4.53299 4.58881 4.61937 4.65175 4.68031 4.76661 4.80060 4.80458 4.96388 5.00462 5.05627 5.07783 5.10324 5.14422 5.21218 5.24906 5.26280 5.36106 5.40540 5.47920 5.55237 5.56760 5.70151 5.73425 5.76631 5.76869 5.81834 6.17454 6.46274 6.77298 7.21356 7.41580 7.91384 8.45455 9.26859 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.002635 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.411152 B =10625.429109 C =11065.457103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.079 4.079 7 C -0.099 4.099 8 C 0.513 3.487 9 O -0.581 6.581 10 N -0.699 5.699 11 C 0.146 3.854 12 H 0.074 0.926 13 C -0.115 4.115 14 C -0.124 4.124 15 C 0.180 3.820 16 N -0.595 5.595 17 C -0.246 4.246 18 H 0.081 0.919 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.960 3.040 22 H -0.278 1.278 23 H -0.305 1.305 24 H -0.274 1.274 25 C 0.156 3.844 26 H 0.026 0.974 27 C -0.126 4.126 28 C -0.119 4.119 29 C -0.128 4.128 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.409 0.591 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.056 0.944 44 H -0.008 1.008 45 H 0.055 0.945 46 H 0.246 0.754 47 H 0.061 0.939 48 H 0.045 0.955 49 H 0.060 0.940 50 H 0.123 0.877 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.217 -18.563 2.422 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.145 4.145 5 C -0.135 4.135 6 C -0.079 4.079 7 C -0.138 4.138 8 C 0.301 3.699 9 O -0.462 6.462 10 N -0.350 5.350 11 C 0.039 3.961 12 H 0.092 0.908 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.054 3.946 16 N -0.319 5.319 17 C -0.376 4.376 18 H 0.099 0.901 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.789 3.211 22 H -0.204 1.204 23 H -0.232 1.232 24 H -0.200 1.200 25 C 0.050 3.950 26 H 0.044 0.956 27 C -0.184 4.184 28 C -0.137 4.137 29 C -0.146 4.146 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.246 0.754 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.010 0.990 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.080 0.920 48 H 0.065 0.935 49 H 0.079 0.921 50 H 0.141 0.859 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.740 -19.133 2.369 23.108 hybrid contribution -0.003 1.720 -0.183 1.729 sum -12.743 -17.413 2.186 21.688 Atomic orbital electron populations 1.21721 0.93965 1.02394 1.01927 1.20576 0.96726 0.91363 1.03406 1.20183 0.98861 0.97233 0.92999 1.21217 1.00199 0.94691 0.98403 1.21191 0.99107 0.95505 0.97683 1.19437 0.99330 0.95253 0.93895 1.20708 0.90535 0.95613 1.06967 1.20943 0.90622 0.83161 0.75199 1.90663 1.71252 1.32504 1.51750 1.45964 1.06906 1.08721 1.73423 1.21229 0.80533 0.98133 0.96215 0.90770 1.21703 1.00139 0.97734 0.95743 1.21937 1.00415 0.95788 0.98198 1.20565 0.94921 0.94502 0.84634 1.44321 1.65196 1.18763 1.03586 1.19449 1.17039 0.86156 1.14974 0.90107 1.25812 0.98447 0.99300 1.01069 1.70182 1.29921 1.21973 1.36233 0.85453 0.79484 0.78629 0.77495 1.20413 1.23188 1.20023 1.20842 0.95905 0.87088 0.91204 0.95630 1.21686 1.01051 1.00735 0.94890 1.21177 0.99271 0.95547 0.97688 1.21206 1.00301 0.94650 0.98433 0.92820 0.92922 0.91098 0.90554 0.90441 0.84642 0.85485 0.86095 0.86572 0.75436 0.91953 0.92858 0.92207 0.92552 0.98993 0.92671 0.94523 0.91981 0.93541 0.92093 0.85864 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.89 71.98 0.71 -1.00 16 2 C -0.08 -1.19 6.06 29.85 0.18 -1.01 16 3 C -0.09 -1.84 5.13 -19.87 -0.10 -1.95 16 4 C -0.13 -2.64 9.70 22.27 0.22 -2.42 16 5 C -0.12 -2.69 9.70 22.27 0.22 -2.47 16 6 C -0.08 -1.91 4.37 -19.86 -0.09 -2.00 16 7 C -0.10 -2.21 5.83 29.10 0.17 -2.04 16 8 C 0.51 15.31 7.79 87.66 0.68 15.99 16 9 O -0.58 -21.55 15.70 -3.03 -0.05 -21.60 16 10 N -0.70 -21.37 3.47 -442.15 -1.53 -22.90 16 11 C 0.15 4.95 2.32 45.07 0.10 5.06 16 12 H 0.07 2.58 7.58 -2.39 -0.02 2.56 16 13 C -0.11 -3.94 5.58 30.62 0.17 -3.77 16 14 C -0.12 -4.56 5.93 30.67 0.18 -4.38 16 15 C 0.18 8.21 5.28 86.36 0.46 8.67 16 16 N -0.59 -26.80 2.64 -675.21 -1.79 -28.58 16 17 C -0.25 -11.99 8.58 84.03 0.72 -11.27 16 18 H 0.08 3.71 6.23 -2.91 -0.02 3.69 16 19 C -0.05 -2.66 4.94 84.86 0.42 -2.24 16 20 N -0.94 -53.22 11.23 21.65 0.24 -52.98 16 21 Si 0.96 42.35 29.58 68.60 2.03 44.38 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 25 C 0.16 5.97 3.20 44.98 0.14 6.11 16 26 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 27 C -0.13 -4.28 7.73 71.98 0.56 -3.72 16 28 C -0.12 -2.81 9.70 22.27 0.22 -2.59 16 29 C -0.13 -2.71 9.70 22.27 0.22 -2.50 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 34 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 35 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 37 H 0.12 2.19 8.09 -2.39 -0.02 2.17 16 38 H 0.12 2.23 8.08 -2.39 -0.02 2.21 16 39 H 0.41 12.52 7.77 -92.71 -0.72 11.80 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 42 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.06 2.04 7.53 -2.39 -0.02 2.02 16 44 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 45 H 0.05 2.87 6.15 -2.39 -0.01 2.85 16 46 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 47 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 48 H 0.05 1.72 7.67 -2.39 -0.02 1.71 16 49 H 0.06 1.97 6.37 -2.38 -0.02 1.95 16 50 H 0.12 2.67 8.06 -2.91 -0.02 2.64 16 51 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -63.07 400.85 4.26 -58.80 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.18 Total: 30.41 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 5.17 Total: -7.53 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -3.08 Total: -104.46 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.60 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -63.07 4.26 -58.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993906879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.377 kcal (2) G-P(sol) polarization free energy of solvation -63.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds