Wall clock time and date at job start Tue Mar 31 2020 16:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47192 * 2 1 4 4 C 1.38257 * 120.00372 * 265.25978 * 3 2 1 5 5 C 1.38210 * 120.00360 * 180.27561 * 4 3 2 6 6 C 1.38258 * 119.99609 * 359.74772 * 5 4 3 7 7 C 1.38206 * 120.00157 * 359.97438 * 6 5 4 8 8 C 1.38213 * 120.00031 * 85.00921 * 3 2 1 9 9 C 1.50702 * 119.99742 * 359.97438 * 8 3 2 10 10 C 1.50694 * 109.47143 * 84.72979 * 9 8 3 11 11 O 1.21275 * 119.99961 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99872 * 179.97438 * 10 9 8 13 13 C 1.47018 * 125.64981 * 0.02817 * 12 10 9 14 14 C 1.54325 * 107.40412 * 178.82520 * 13 12 10 15 15 H 1.09002 * 110.72265 * 219.52294 * 14 13 12 16 16 N 1.46501 * 110.72113 * 96.24493 * 14 13 12 17 17 C 1.36931 * 119.99967 * 86.45843 * 16 14 13 18 18 H 1.08005 * 120.00140 * 359.97438 * 17 16 14 19 19 C 1.38810 * 120.00234 * 180.02562 * 17 16 14 20 20 N 1.31623 * 119.99941 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00140 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46966 * 59.99259 * 21 19 17 23 23 H 1.48495 * 109.46855 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46632 * 299.99251 * 21 19 17 25 25 C 1.55405 * 102.82616 * 337.97548 * 14 13 12 26 26 C 1.53000 * 110.89394 * 277.26684 * 25 14 13 27 27 C 1.53000 * 111.03706 * 153.46985 * 25 14 13 28 28 C 1.47426 * 125.64500 * 179.97438 * 12 10 9 29 29 H 1.08998 * 109.47448 * 59.99475 * 1 2 3 30 30 H 1.08992 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46376 * 299.99637 * 1 2 3 32 32 H 1.09008 * 109.46456 * 240.00794 * 2 1 3 33 33 H 1.08998 * 109.47448 * 120.00525 * 2 1 3 34 34 H 1.08010 * 120.00131 * 0.04202 * 4 3 2 35 35 H 1.08004 * 120.00270 * 179.76639 * 5 4 3 36 36 H 1.08008 * 119.99799 * 179.97438 * 6 5 4 37 37 H 1.08003 * 120.00271 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.46955 * 324.72521 * 9 8 3 39 39 H 1.09007 * 109.46827 * 204.73201 * 9 8 3 40 40 H 1.09002 * 109.88241 * 298.32048 * 13 12 10 41 41 H 1.09000 * 109.88049 * 59.33177 * 13 12 10 42 42 H 0.97002 * 119.99754 * 266.45742 * 16 14 13 43 43 H 0.96993 * 120.00092 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.47124 * 173.68399 * 26 25 14 45 45 H 1.09000 * 109.46711 * 293.68751 * 26 25 14 46 46 H 1.08996 * 109.47179 * 53.68650 * 26 25 14 47 47 H 1.08997 * 109.47294 * 306.22850 * 27 25 14 48 48 H 1.08997 * 109.47279 * 66.23530 * 27 25 14 49 49 H 1.09006 * 109.47100 * 186.23324 * 27 25 14 50 50 H 1.08999 * 110.36956 * 323.01018 * 28 12 10 51 51 H 1.09001 * 110.36709 * 85.22211 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3561 2.0396 -1.1932 5 6 2.8222 3.3407 -1.1927 6 6 2.9598 4.0252 0.0006 7 6 2.6307 3.4086 1.1929 8 6 2.1646 2.1070 1.1924 9 6 1.8058 1.4346 2.4925 10 6 2.9824 0.6317 2.9842 11 8 4.0112 0.6082 2.3425 12 7 2.8918 -0.0594 4.1378 13 6 1.7105 -0.1180 5.0110 14 6 2.0562 -1.0475 6.1934 15 1 1.2027 -1.6732 6.4545 16 7 2.5034 -0.2690 7.3511 17 6 1.5858 0.2286 8.2373 18 1 0.5323 0.0476 8.0826 19 6 2.0094 0.9667 9.3340 20 7 3.2932 1.1877 9.5223 21 14 0.7577 1.6450 10.5434 22 1 -0.0114 0.5239 11.1407 23 1 1.4611 2.3902 11.6180 24 1 -0.1717 2.5597 9.8328 25 6 3.2200 -1.9077 5.6273 26 6 2.6822 -3.0739 4.7957 27 6 4.1280 -2.4111 6.7511 28 6 3.9605 -0.8828 4.7322 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8902 33 1 1.8934 -0.5139 0.8899 34 1 2.2483 1.5050 -2.1255 35 1 3.0787 3.8229 -2.1245 36 1 3.3245 5.0419 0.0010 37 1 2.7378 3.9434 2.1251 38 1 0.9540 0.7727 2.3362 39 1 1.5469 2.1911 3.2334 40 1 1.4730 0.8795 5.3807 41 1 0.8611 -0.5206 4.4591 42 1 3.4495 -0.1062 7.4898 43 1 3.5893 1.7031 10.2888 44 1 3.5132 -3.5941 4.3192 45 1 2.1448 -3.7654 5.4447 46 1 2.0054 -2.6931 4.0309 47 1 4.4625 -1.5667 7.3538 48 1 3.5754 -3.1097 7.3793 49 1 4.9932 -2.9156 6.3208 50 1 4.5221 -1.3964 3.9520 51 1 4.6266 -0.2636 5.3331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995968936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:15 Heat of formation + Delta-G solvation = -10.131272 kcal Electronic energy + Delta-G solvation = -29248.004369 eV Core-core repulsion = 25532.826367 eV Total energy + Delta-G solvation = -3715.178002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.33485 -39.37113 -37.69146 -34.35800 -33.94200 -33.24033 -32.42001 -30.78817 -29.56759 -28.09925 -27.95054 -26.70411 -25.59837 -23.93988 -23.77026 -22.09777 -21.52274 -20.60920 -18.99425 -18.58921 -17.27750 -16.63995 -16.38937 -16.22825 -15.53473 -15.08534 -14.91183 -14.62376 -14.13796 -13.90219 -13.84675 -13.66162 -13.56030 -13.16423 -13.06720 -12.87345 -12.69045 -12.43345 -12.17732 -12.04630 -11.94054 -11.87110 -11.79866 -11.62363 -11.46183 -11.33074 -11.01421 -10.91791 -10.85107 -10.71996 -10.57333 -10.44197 -10.29157 -9.88045 -9.69870 -9.57887 -9.02296 -8.76764 -8.55768 -8.20192 -7.09082 -5.86304 -3.16512 1.35318 1.42609 2.94116 3.33759 3.37885 3.42912 3.44125 3.83154 4.49586 4.63737 4.71365 4.72135 4.88771 4.94734 5.08013 5.08963 5.12533 5.20691 5.25114 5.29890 5.41353 5.44163 5.48981 5.55952 5.59600 5.62598 5.69122 5.74700 5.79570 5.85193 5.89442 5.95197 5.99552 6.09325 6.11242 6.17354 6.18761 6.21168 6.27445 6.34159 6.39580 6.48626 6.51618 6.56818 6.66644 6.68980 6.76382 6.92316 7.02988 7.60580 7.92269 8.31534 8.49434 9.43358 9.98205 10.32845 11.35671 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.003297 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.955187 B = 8491.292470 C = 9456.022139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.065 4.065 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.057 4.057 9 C -0.103 4.103 10 C 0.529 3.471 11 O -0.546 6.546 12 N -0.606 5.606 13 C 0.070 3.930 14 C 0.180 3.820 15 H 0.070 0.930 16 N -0.712 5.712 17 C -0.248 4.248 18 H 0.071 0.929 19 C -0.007 4.007 20 N -0.929 5.929 21 Si 0.907 3.093 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.089 4.089 26 C -0.129 4.129 27 C -0.127 4.127 28 C 0.122 3.878 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.045 0.955 50 H 0.068 0.932 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.015 -2.712 -18.383 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.065 4.065 4 C -0.138 4.138 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.122 4.122 8 C -0.057 4.057 9 C -0.143 4.143 10 C 0.317 3.683 11 O -0.424 6.424 12 N -0.339 5.339 13 C -0.056 4.056 14 C 0.067 3.933 15 H 0.088 0.912 16 N -0.353 5.353 17 C -0.379 4.379 18 H 0.089 0.911 19 C -0.204 4.204 20 N -0.576 5.576 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.091 4.091 26 C -0.186 4.186 27 C -0.185 4.185 28 C -0.001 4.001 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.223 0.777 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.086 0.914 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.599 -2.614 -18.638 19.161 hybrid contribution -0.358 0.694 0.831 1.141 sum -3.957 -1.920 -17.806 18.341 Atomic orbital electron populations 1.21774 0.94726 1.01768 1.02175 1.20551 0.95923 0.92947 1.03037 1.19653 0.98530 0.95671 0.92609 1.20937 1.00489 0.95224 0.97197 1.21064 1.00114 0.94890 0.97900 1.21051 1.00808 0.99917 0.92538 1.21023 0.98339 0.94572 0.98267 1.19177 0.99373 0.93943 0.93202 1.20713 0.97738 1.00111 0.95690 1.20021 0.89183 0.79430 0.79674 1.90689 1.31408 1.63782 1.56521 1.48417 1.16090 1.47802 1.21554 1.23275 0.86638 1.03094 0.92558 1.21238 0.94708 0.90626 0.86687 0.91244 1.42468 1.07152 1.61590 1.24119 1.19169 0.89370 1.26958 1.02367 0.91068 1.24744 0.95943 1.00865 0.98850 1.69643 1.12787 1.44415 1.30785 0.86282 0.80312 0.78737 0.80899 1.21192 1.21712 1.21225 1.22045 0.96977 0.94535 0.95498 1.21676 1.00615 0.97065 0.99285 1.21602 0.97930 1.01843 0.97142 1.22236 0.90104 0.91982 0.95761 0.92547 0.92318 0.92411 0.91149 0.90978 0.86386 0.86397 0.86264 0.86135 0.88067 0.88054 0.90527 0.92856 0.77697 0.93304 0.92896 0.92350 0.92896 0.90871 0.92270 0.93630 0.91357 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.72 37.16 0.36 -0.97 16 2 C -0.09 -0.96 5.38 -27.88 -0.15 -1.11 16 3 C -0.06 -0.82 5.13 -104.63 -0.54 -1.36 16 4 C -0.12 -1.39 9.68 -39.58 -0.38 -1.77 16 5 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 6 C -0.13 -1.48 10.05 -39.59 -0.40 -1.87 16 7 C -0.10 -1.38 9.68 -39.59 -0.38 -1.77 16 8 C -0.06 -0.78 4.37 -104.62 -0.46 -1.23 16 9 C -0.10 -1.39 4.35 -29.04 -0.13 -1.52 16 10 C 0.53 8.86 7.02 -10.99 -0.08 8.79 16 11 O -0.55 -10.87 16.29 5.56 0.09 -10.78 16 12 N -0.61 -10.01 3.31 -170.52 -0.57 -10.58 16 13 C 0.07 1.15 5.83 -3.07 -0.02 1.13 16 14 C 0.18 3.20 2.88 -65.96 -0.19 3.01 16 15 H 0.07 1.22 8.03 -51.93 -0.42 0.81 16 16 N -0.71 -16.19 4.60 -51.52 -0.24 -16.43 16 17 C -0.25 -6.34 9.98 -15.06 -0.15 -6.49 16 18 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 20 N -0.93 -26.76 13.06 55.49 0.72 -26.03 16 21 Si 0.91 21.36 29.55 -169.99 -5.02 16.34 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.09 -1.37 0.83 -152.23 -0.13 -1.49 16 26 C -0.13 -1.64 8.60 37.16 0.32 -1.32 16 27 C -0.13 -2.00 8.35 37.16 0.31 -1.69 16 28 C 0.12 2.02 5.82 -2.53 -0.01 2.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.53 6.79 -51.93 -0.35 0.18 16 32 H 0.07 0.70 8.05 -51.92 -0.42 0.29 16 33 H 0.07 0.90 6.40 -51.93 -0.33 0.57 16 34 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 36 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 38 H 0.10 1.18 5.63 -51.93 -0.29 0.89 16 39 H 0.10 1.31 8.05 -51.93 -0.42 0.89 16 40 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.39 9.53 6.02 -40.82 -0.25 9.28 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.66 7.81 -51.93 -0.41 0.26 16 47 H 0.07 1.35 6.17 -51.93 -0.32 1.03 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.07 1.11 7.95 -51.93 -0.41 0.70 16 51 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 LS Contribution 403.74 15.07 6.08 6.08 Total: -1.00 -30.48 403.74 -10.09 -40.56 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -8.65 Total: 10.52 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -2.51 Total: -9.70 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.08 Total: -53.03 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.48 -10.09 -40.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995968936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.433 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds