Wall clock time and date at job start Tue Mar 31 2020 16:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47192 * 2 1 4 4 C 1.38257 * 120.00372 * 265.25978 * 3 2 1 5 5 C 1.38210 * 120.00360 * 180.27561 * 4 3 2 6 6 C 1.38258 * 119.99609 * 359.74772 * 5 4 3 7 7 C 1.38206 * 120.00157 * 359.97438 * 6 5 4 8 8 C 1.38213 * 120.00031 * 85.00921 * 3 2 1 9 9 C 1.50702 * 119.99742 * 359.97438 * 8 3 2 10 10 C 1.50694 * 109.47143 * 84.72979 * 9 8 3 11 11 O 1.21275 * 119.99961 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99872 * 179.97438 * 10 9 8 13 13 C 1.47018 * 125.64981 * 0.02817 * 12 10 9 14 14 C 1.54325 * 107.40412 * 178.82520 * 13 12 10 15 15 H 1.09002 * 110.72265 * 219.52294 * 14 13 12 16 16 N 1.46501 * 110.72113 * 96.24493 * 14 13 12 17 17 C 1.36931 * 119.99967 * 86.45843 * 16 14 13 18 18 H 1.08005 * 120.00140 * 359.97438 * 17 16 14 19 19 C 1.38810 * 120.00234 * 180.02562 * 17 16 14 20 20 N 1.31623 * 119.99941 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00140 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46966 * 59.99259 * 21 19 17 23 23 H 1.48495 * 109.46855 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46632 * 299.99251 * 21 19 17 25 25 C 1.55405 * 102.82616 * 337.97548 * 14 13 12 26 26 C 1.53000 * 110.89394 * 277.26684 * 25 14 13 27 27 C 1.53000 * 111.03706 * 153.46985 * 25 14 13 28 28 C 1.47426 * 125.64500 * 179.97438 * 12 10 9 29 29 H 1.08998 * 109.47448 * 59.99475 * 1 2 3 30 30 H 1.08992 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46376 * 299.99637 * 1 2 3 32 32 H 1.09008 * 109.46456 * 240.00794 * 2 1 3 33 33 H 1.08998 * 109.47448 * 120.00525 * 2 1 3 34 34 H 1.08010 * 120.00131 * 0.04202 * 4 3 2 35 35 H 1.08004 * 120.00270 * 179.76639 * 5 4 3 36 36 H 1.08008 * 119.99799 * 179.97438 * 6 5 4 37 37 H 1.08003 * 120.00271 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.46955 * 324.72521 * 9 8 3 39 39 H 1.09007 * 109.46827 * 204.73201 * 9 8 3 40 40 H 1.09002 * 109.88241 * 298.32048 * 13 12 10 41 41 H 1.09000 * 109.88049 * 59.33177 * 13 12 10 42 42 H 0.97002 * 119.99754 * 266.45742 * 16 14 13 43 43 H 0.96993 * 120.00092 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.47124 * 173.68399 * 26 25 14 45 45 H 1.09000 * 109.46711 * 293.68751 * 26 25 14 46 46 H 1.08996 * 109.47179 * 53.68650 * 26 25 14 47 47 H 1.08997 * 109.47294 * 306.22850 * 27 25 14 48 48 H 1.08997 * 109.47279 * 66.23530 * 27 25 14 49 49 H 1.09006 * 109.47100 * 186.23324 * 27 25 14 50 50 H 1.08999 * 110.36956 * 323.01018 * 28 12 10 51 51 H 1.09001 * 110.36709 * 85.22211 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3561 2.0396 -1.1932 5 6 2.8222 3.3407 -1.1927 6 6 2.9598 4.0252 0.0006 7 6 2.6307 3.4086 1.1929 8 6 2.1646 2.1070 1.1924 9 6 1.8058 1.4346 2.4925 10 6 2.9824 0.6317 2.9842 11 8 4.0112 0.6082 2.3425 12 7 2.8918 -0.0594 4.1378 13 6 1.7105 -0.1180 5.0110 14 6 2.0562 -1.0475 6.1934 15 1 1.2027 -1.6732 6.4545 16 7 2.5034 -0.2690 7.3511 17 6 1.5858 0.2286 8.2373 18 1 0.5323 0.0476 8.0826 19 6 2.0094 0.9667 9.3340 20 7 3.2932 1.1877 9.5223 21 14 0.7577 1.6450 10.5434 22 1 -0.0114 0.5239 11.1407 23 1 1.4611 2.3902 11.6180 24 1 -0.1717 2.5597 9.8328 25 6 3.2200 -1.9077 5.6273 26 6 2.6822 -3.0739 4.7957 27 6 4.1280 -2.4111 6.7511 28 6 3.9605 -0.8828 4.7322 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8902 33 1 1.8934 -0.5139 0.8899 34 1 2.2483 1.5050 -2.1255 35 1 3.0787 3.8229 -2.1245 36 1 3.3245 5.0419 0.0010 37 1 2.7378 3.9434 2.1251 38 1 0.9540 0.7727 2.3362 39 1 1.5469 2.1911 3.2334 40 1 1.4730 0.8795 5.3807 41 1 0.8611 -0.5206 4.4591 42 1 3.4495 -0.1062 7.4898 43 1 3.5893 1.7031 10.2888 44 1 3.5132 -3.5941 4.3192 45 1 2.1448 -3.7654 5.4447 46 1 2.0054 -2.6931 4.0309 47 1 4.4625 -1.5667 7.3538 48 1 3.5754 -3.1097 7.3793 49 1 4.9932 -2.9156 6.3208 50 1 4.5221 -1.3964 3.9520 51 1 4.6266 -0.2636 5.3331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995968936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:14 Heat of formation + Delta-G solvation = -25.526125 kcal Electronic energy + Delta-G solvation = -29248.671940 eV Core-core repulsion = 25532.826367 eV Total energy + Delta-G solvation = -3715.845573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.56143 -40.46852 -39.02196 -35.70826 -35.21795 -34.60780 -33.42878 -32.59078 -30.41810 -29.44294 -29.15619 -28.00649 -26.82656 -25.63818 -24.69159 -23.24667 -22.79514 -21.53511 -20.36895 -19.89091 -19.08905 -17.97930 -17.41311 -17.33158 -16.87114 -16.29303 -16.16585 -15.91370 -15.74062 -15.41696 -14.89969 -14.70945 -14.55865 -14.35534 -14.25462 -13.97464 -13.89798 -13.70321 -13.37528 -13.27716 -13.11647 -13.00030 -12.86919 -12.78375 -12.73855 -12.65779 -12.62907 -12.18111 -12.16643 -12.07393 -11.82131 -11.68687 -11.56232 -11.42813 -11.28099 -11.00402 -10.85680 -9.70382 -9.60139 -9.48139 -8.99417 -7.90799 -5.19112 0.42112 0.50820 1.50866 1.52287 1.58142 1.61460 2.07180 2.58661 2.86991 3.40507 3.42345 3.66995 3.81016 3.84552 3.88526 3.95615 4.01432 4.06959 4.08412 4.28560 4.31897 4.34136 4.45935 4.49536 4.51929 4.60922 4.63813 4.66916 4.72884 4.74371 4.80750 4.88900 4.92079 5.02201 5.03956 5.08718 5.09689 5.11227 5.16209 5.23009 5.29732 5.35012 5.40590 5.41268 5.55722 5.59332 5.61573 5.62091 5.75428 6.14375 6.30210 6.58648 7.15737 7.37854 8.12382 8.35082 9.32303 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.003297 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.955187 B = 8491.292470 C = 9456.022139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.077 4.077 4 C -0.128 4.128 5 C -0.123 4.123 6 C -0.134 4.134 7 C -0.127 4.127 8 C -0.079 4.079 9 C -0.094 4.094 10 C 0.527 3.473 11 O -0.580 6.580 12 N -0.606 5.606 13 C 0.080 3.920 14 C 0.170 3.830 15 H 0.081 0.919 16 N -0.724 5.724 17 C -0.235 4.235 18 H 0.083 0.917 19 C -0.073 4.073 20 N -0.970 5.970 21 Si 0.967 3.033 22 H -0.277 1.277 23 H -0.304 1.304 24 H -0.279 1.279 25 C -0.076 4.076 26 C -0.122 4.122 27 C -0.122 4.122 28 C 0.121 3.879 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.138 0.862 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.090 0.910 42 H 0.374 0.626 43 H 0.248 0.752 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.038 0.962 48 H 0.060 0.940 49 H 0.067 0.933 50 H 0.073 0.927 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.962 -3.852 -20.557 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.077 4.077 4 C -0.146 4.146 5 C -0.140 4.140 6 C -0.152 4.152 7 C -0.145 4.145 8 C -0.079 4.079 9 C -0.133 4.133 10 C 0.317 3.683 11 O -0.461 6.461 12 N -0.338 5.338 13 C -0.045 4.045 14 C 0.060 3.940 15 H 0.099 0.901 16 N -0.364 5.364 17 C -0.367 4.367 18 H 0.101 0.899 19 C -0.265 4.265 20 N -0.620 5.620 21 Si 0.797 3.203 22 H -0.203 1.203 23 H -0.230 1.230 24 H -0.205 1.205 25 C -0.077 4.077 26 C -0.179 4.179 27 C -0.180 4.180 28 C -0.001 4.001 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.208 0.792 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.086 0.914 50 H 0.091 0.909 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.599 -3.784 -20.845 21.914 hybrid contribution 0.288 1.023 1.394 1.753 sum -5.312 -2.760 -19.451 20.351 Atomic orbital electron populations 1.21746 0.93126 1.02700 1.02373 1.20557 0.97254 0.91832 1.02608 1.19943 0.98548 0.96497 0.92703 1.21291 0.99875 0.95627 0.97760 1.21445 0.99012 0.94853 0.98724 1.21347 1.00572 1.00930 0.92378 1.21212 0.99296 0.94992 0.98981 1.19302 1.00671 0.94358 0.93590 1.20691 0.96818 0.99972 0.95851 1.20593 0.89607 0.78950 0.79168 1.90662 1.32996 1.64909 1.57543 1.48492 1.16061 1.47752 1.21528 1.23085 0.87530 1.01630 0.92263 1.21506 0.95982 0.90850 0.85645 0.90137 1.42641 1.06210 1.62143 1.25385 1.19606 0.90291 1.24902 1.01903 0.89879 1.25480 0.97359 1.02532 1.01126 1.69812 1.14656 1.46244 1.31324 0.85302 0.78225 0.78147 0.78614 1.20293 1.23046 1.20483 1.21997 0.95647 0.94885 0.95212 1.21635 1.01268 0.95891 0.99135 1.21535 0.98919 1.00596 0.96986 1.22190 0.90214 0.92015 0.95727 0.91841 0.90987 0.92722 0.90209 0.92721 0.84098 0.83646 0.84435 0.86486 0.86006 0.87856 0.92683 0.89202 0.79184 0.94310 0.91584 0.91018 0.92249 0.94340 0.92054 0.91446 0.90869 0.94276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.72 71.98 0.70 -1.51 16 2 C -0.09 -1.72 5.38 29.85 0.16 -1.56 16 3 C -0.08 -1.85 5.13 -19.87 -0.10 -1.95 16 4 C -0.13 -2.68 9.68 22.27 0.22 -2.47 16 5 C -0.12 -2.47 10.05 22.27 0.22 -2.24 16 6 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16 7 C -0.13 -3.37 9.68 22.27 0.22 -3.16 16 8 C -0.08 -2.13 4.37 -19.87 -0.09 -2.21 16 9 C -0.09 -2.49 4.35 29.10 0.13 -2.36 16 10 C 0.53 17.58 7.02 87.66 0.62 18.20 16 11 O -0.58 -23.37 16.29 -3.01 -0.05 -23.42 16 12 N -0.61 -19.76 3.31 -811.81 -2.69 -22.45 16 13 C 0.08 2.50 5.83 86.73 0.51 3.01 16 14 C 0.17 5.87 2.88 46.27 0.13 6.01 16 15 H 0.08 2.64 8.03 -2.39 -0.02 2.62 16 16 N -0.72 -33.26 4.60 -316.91 -1.46 -34.71 16 17 C -0.24 -12.02 9.98 84.03 0.84 -11.18 16 18 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 19 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 20 N -0.97 -57.75 13.06 21.65 0.28 -57.47 16 21 Si 0.97 44.39 29.55 68.60 2.03 46.41 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 C -0.08 -2.24 0.83 -50.70 -0.04 -2.28 16 26 C -0.12 -2.73 8.60 71.98 0.62 -2.12 16 27 C -0.12 -3.80 8.35 71.98 0.60 -3.20 16 28 C 0.12 4.04 5.82 86.85 0.51 4.55 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.87 6.79 -2.39 -0.02 0.86 16 32 H 0.08 1.43 8.05 -2.38 -0.02 1.41 16 33 H 0.05 1.29 6.40 -2.39 -0.02 1.28 16 34 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 35 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.12 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.12 2.64 5.63 -2.39 -0.01 2.62 16 39 H 0.10 2.65 8.05 -2.38 -0.02 2.64 16 40 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 41 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.37 19.13 6.02 -92.71 -0.56 18.58 16 43 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.06 1.28 7.81 -2.39 -0.02 1.26 16 47 H 0.04 1.46 6.17 -2.39 -0.01 1.45 16 48 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 50 H 0.07 2.36 7.95 -2.39 -0.02 2.34 16 51 H 0.04 1.51 8.04 -2.39 -0.02 1.50 16 Total: -1.00 -67.40 403.74 4.38 -63.02 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: 0.35 Total: 39.41 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 5.92 Total: -10.81 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -3.86 Total: -114.63 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -67.40 4.38 -63.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995968936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.497 kcal (2) G-P(sol) polarization free energy of solvation -67.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds